Rh1CG288200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0004606
Physical Location & Seq
Reverse (-)
56108479 .. 56110127
1649 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG288200.1

Sequence Viewer

Length: 489 bp
ATGCACAGACATGACTGCGCTGACGGCATTCCGTCGAATGAACAGGTGGCGGTGCTCCAGATTTTCCAGAATCGACAGGATCAACGGCTCGACGATCTCGGCCTCGTTCAATCGGCAGAGGAATCGGAGCGTGACACAACGGATGTACTTGTTAGGGATCTGGAGATTGTTGCGGAGGTTCTGGCAGATGAGGATCATCTTTGGGAGAACTTTGCCTCGGGAATCTGTCTTATCAATGATCTCGAGGTAGAGGAGGAGAAGCTTATGGACGGTGTGGTCCTCGGAGGGGAGGACGTAGCGGATAATGGTGATGAAGAGCTGGGGAATTGTGTCCCCTTCTTCATGGCTTCGATCTTGGCTTCGACGTCGTTTTTTTCGAGAGCTGGAGATTATCGATCGGTTCTTGTCCTGGATGGGTGCCCAAATCAATTTTTATTTTCATTGTTTGTTTTGATGAACTTTTTAATGAGTTGGCATCATATTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.2

Weight (kDa)

4.07

Isoelectric Point (pI)

46.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 275
AatII GACGTC 1 cut(s) 368
AccB1I GGYRCC 1 cut(s) 417
AciI CCGC 3 cut(s) 50, 173, 299
AclWI GGATC 3 cut(s) 87, 165, 201
AcyI GRCGYC 1 cut(s) 365
AfaI GTAC 1 cut(s) 147
AfiI CCNNNNNNNGG 1 cut(s) 286
AgsI TTSAA 1 cut(s) 110
AjnI CCWGG 1 cut(s) 408
AluBI AGCT 3 cut(s) 262, 319, 383
AluI AGCT 3 cut(s) 262, 319, 383
Alw21I GWGCWC 1 cut(s) 57
AlwI GGATC 3 cut(s) 87, 165, 201
Ama87I CYCGRG 2 cut(s) 217, 242
AoxI GGCC 1 cut(s) 100
AspLEI GCGC 1 cut(s) 20
AspS9I GGNCC 1 cut(s) 277
AsuHPI GGTGA 1 cut(s) 320
AvaI CYCGRG 2 cut(s) 217, 242
AvaII GGWCC 1 cut(s) 277
BaeGI GKGCMC 1 cut(s) 422
BanI GGYRCC 1 cut(s) 417
Bbv12I GWGCWC 1 cut(s) 57
BccI CCATC 1 cut(s) 407
BceAI ACGGC 2 cut(s) 40, 101
BcgI CGANNNNNNTGC 2 cut(s) 105, 139
BciT130I CCWGG 1 cut(s) 410
Bme1390I CCNGG 1 cut(s) 410
Bme18I GGWCC 1 cut(s) 277
BmeT110I CYCGRG 2 cut(s) 217, 242
BmgT120I GGNCC 1 cut(s) 277
BmiI GGNNCC 1 cut(s) 419
BmrFI CCNGG 1 cut(s) 410
BmsI GCATC 1 cut(s) 484
BpmI CTGGAG 3 cut(s) 41, 182, 405
Bsa29I ATCGAT 1 cut(s) 394
BsaBI GATNNNNATC 1 cut(s) 192
BsaHI GRCGYC 1 cut(s) 365
BsaJI CCNNGG 2 cut(s) 216, 280
Bsc4I CCNNNNNNNGG 1 cut(s) 286
Bse8I GATNNNNATC 1 cut(s) 192
BseBI CCWGG 1 cut(s) 410
BseCI ATCGAT 1 cut(s) 394
BseDI CCNNGG 2 cut(s) 216, 280
BseGI GGATG 2 cut(s) 148, 418
BseJI GATNNNNATC 1 cut(s) 192
BseLI CCNNNNNNNGG 1 cut(s) 286
BseRI GAGGAG 2 cut(s) 266, 269
BseSI GKGCMC 1 cut(s) 422
BseYI CCCAGC 1 cut(s) 319
Bsh1285I CGRYCG 1 cut(s) 398
BshFI GGCC 1 cut(s) 102
BshNI GGYRCC 1 cut(s) 417
BshVI ATCGAT 1 cut(s) 394
BsiEI CGRYCG 1 cut(s) 398
BsiHKAI GWGCWC 1 cut(s) 57
BsiHKCI CYCGRG 2 cut(s) 217, 242
BslFI GGGAC 1 cut(s) 317
BslI CCNNNNNNNGG 1 cut(s) 286
BsmFI GGGAC 1 cut(s) 317
BsmI GAATGC 1 cut(s) 27
BsnI GGCC 1 cut(s) 102
BsoBI CYCGRG 2 cut(s) 217, 242
Bsp1286I GDGCHC 2 cut(s) 57, 422
Bsp143I GATC 7 cut(s) 79, 94, 157, 193, 238, 351, 395
BspACI CCGC 3 cut(s) 50, 173, 299
BspANI GGCC 1 cut(s) 102
BspDI ATCGAT 1 cut(s) 394
BspLI GGNNCC 1 cut(s) 419
BspPI GGATC 3 cut(s) 87, 165, 201
BspQI GCTCTTC 1 cut(s) 309
BspT107I GGYRCC 1 cut(s) 417
BssECI CCNNGG 2 cut(s) 216, 280
BssMI GATC 7 cut(s) 79, 94, 157, 193, 238, 351, 395
BssNI GRCGYC 1 cut(s) 365
Bst2UI CCWGG 1 cut(s) 410
Bst4CI ACNGT 1 cut(s) 272
Bst6I CTCTTC 1 cut(s) 309
BstACI GRCGYC 1 cut(s) 365
BstF5I GGATG 2 cut(s) 148, 418
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 7 cut(s) 82, 97, 160, 196, 241, 354, 398
BstMBI GATC 7 cut(s) 79, 94, 157, 193, 238, 351, 395
BstMCI CGRYCG 1 cut(s) 398
BstMWI GCNNNNNNNGC 1 cut(s) 24
BstNI CCWGG 1 cut(s) 410
BstSCI CCNGG 1 cut(s) 408
BstSLI GKGCMC 1 cut(s) 422
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
Bsu15I ATCGAT 1 cut(s) 394
BsuRI GGCC 1 cut(s) 102
BsuTUI ATCGAT 1 cut(s) 394
BtsCI GGATG 2 cut(s) 148, 418
CfoI GCGC 1 cut(s) 20
Cfr13I GGNCC 1 cut(s) 277
ClaI ATCGAT 1 cut(s) 394
Csp6I GTAC 1 cut(s) 146
CviAII CATG 2 cut(s) 11, 343
CviJI RGCY 7 cut(s) 88, 102, 262, 319, 347, 359, 383
CviKI_1 RGCY 7 cut(s) 88, 102, 262, 319, 347, 359, 383
CviQI GTAC 1 cut(s) 146
DpnI GATC 7 cut(s) 81, 96, 159, 195, 240, 353, 397
DpnII GATC 7 cut(s) 79, 94, 157, 193, 238, 351, 395
DrdI GACNNNNNNGTC 1 cut(s) 275
DseDI GACNNNNNNGTC 1 cut(s) 275
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
Eco47I GGWCC 1 cut(s) 277
Eco88I CYCGRG 2 cut(s) 217, 242
EcoRII CCWGG 1 cut(s) 408
FaeI CATG 2 cut(s) 14, 346
FaiI YATR 4 cut(s) 12, 266, 344, 480
FaqI GGGAC 1 cut(s) 317
FatI CATG 2 cut(s) 10, 342
FokI GGATG 2 cut(s) 155, 425
GlaI GCGC 1 cut(s) 19
GsaI CCCAGC 1 cut(s) 323
GsuI CTGGAG 3 cut(s) 41, 182, 405
HaeIII GGCC 1 cut(s) 102
HhaI GCGC 1 cut(s) 20
Hin1I GRCGYC 1 cut(s) 365
Hin1II CATG 2 cut(s) 14, 346
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HindIII AAGCTT 1 cut(s) 260
HinfI GANTC 3 cut(s) 70, 122, 222
HphI GGTGA 1 cut(s) 320
Hpy188I TCNGA 2 cut(s) 127, 284
Hpy188III TCNNGA 6 cut(s) 58, 67, 161, 219, 242, 378
Hpy99I CGWCG 4 cut(s) 37, 95, 367, 370
HpyAV CCTTC 1 cut(s) 346
HpyCH4III ACNGT 1 cut(s) 272
HpyCH4IV ACGT 2 cut(s) 294, 365
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 24
HpySE526I ACGT 2 cut(s) 294, 365
Hsp92I GRCGYC 1 cut(s) 365
Hsp92II CATG 2 cut(s) 14, 346
HspAI GCGC 1 cut(s) 18
Kzo9I GATC 7 cut(s) 79, 94, 157, 193, 238, 351, 395
LguI GCTCTTC 1 cut(s) 309
LmnI GCTCC 2 cut(s) 60, 127
LweI GCATC 1 cut(s) 484
MaeII ACGT 2 cut(s) 294, 365
MaeIII GTNAC 1 cut(s) 131
MalI GATC 7 cut(s) 81, 96, 159, 195, 240, 353, 397
MboI GATC 7 cut(s) 79, 94, 157, 193, 238, 351, 395
MboII GAAGA 2 cut(s) 326, 331
MflI RGATCY 1 cut(s) 157
MhlI GDGCHC 2 cut(s) 57, 422
MluCI AATT 2 cut(s) 325, 428
MseI TTAA 1 cut(s) 464
MslI CAYNNNNRTG 1 cut(s) 9
MspR9I CCNGG 1 cut(s) 410
Mva1269I GAATGC 1 cut(s) 27
MvaI CCWGG 1 cut(s) 410
MwoI GCNNNNNNNGC 1 cut(s) 24
NdeII GATC 7 cut(s) 79, 94, 157, 193, 238, 351, 395
NlaIII CATG 2 cut(s) 14, 346
NlaIV GGNNCC 1 cut(s) 419
NmeAIII GCCGAG 1 cut(s) 78
NmuCI GTSAC 1 cut(s) 131
PaeR7I CTCGAG 1 cut(s) 242
PciSI GCTCTTC 1 cut(s) 309
PcsI WCGNNNNNNNCGW 1 cut(s) 374
PctI GAATGC 1 cut(s) 27
PfeI GAWTC 3 cut(s) 70, 122, 222
PfoI TCCNGGA 1 cut(s) 408
Ple19I CGATCG 1 cut(s) 398
Psp6I CCWGG 1 cut(s) 408
PspFI CCCAGC 1 cut(s) 319
PspGI CCWGG 1 cut(s) 408
PspN4I GGNNCC 1 cut(s) 419
PspPI GGNCC 1 cut(s) 277
PsuI RGATCY 1 cut(s) 157
PvuI CGATCG 1 cut(s) 398
RsaI GTAC 1 cut(s) 147
RsaNI GTAC 1 cut(s) 146
RseI CAYNNNNRTG 1 cut(s) 9
SapI GCTCTTC 1 cut(s) 309
SaqAI TTAA 1 cut(s) 464
Sau3AI GATC 7 cut(s) 79, 94, 157, 193, 238, 351, 395
Sau96I GGNCC 1 cut(s) 277
ScrFI CCNGG 1 cut(s) 410
SduI GDGCHC 2 cut(s) 57, 422
SetI ASST 8 cut(s) 48, 180, 249, 264, 297, 321, 368, 385
SfaNI GCATC 1 cut(s) 484
Sfr274I CTCGAG 1 cut(s) 242
SinI GGWCC 1 cut(s) 277
SlaI CTCGAG 1 cut(s) 242
SmiMI CAYNNNNRTG 1 cut(s) 9
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 2 cut(s) 325, 428
SsiI CCGC 3 cut(s) 50, 173, 299
StyD4I CCNGG 1 cut(s) 408
TaaI ACNGT 1 cut(s) 272
TaiI ACGT 2 cut(s) 297, 368
TaqI TCGA 8 cut(s) 35, 73, 90, 243, 350, 362, 377, 394
TasI AATT 2 cut(s) 325, 428
TatI WGTACW 1 cut(s) 145
TfiI GAWTC 3 cut(s) 70, 122, 222
Tru1I TTAA 1 cut(s) 464
Tru9I TTAA 1 cut(s) 464
TseFI GTSAC 1 cut(s) 131
Tsp45I GTSAC 1 cut(s) 131
TspDTI ATGAA 5 cut(s) 54, 327, 331, 429, 470
TspGWI ACGGA 2 cut(s) 21, 155
VpaK11BI GGWCC 1 cut(s) 277
XhoI CTCGAG 1 cut(s) 242
ZraI GACGTC 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.