Rw2G046630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0004606
Physical Location & Seq
Reverse (-)
73877888 .. 73881321
3434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G046630.1

Sequence Viewer

Length: 540 bp
ATGGACATGTGCCGGTGTACATCAGCAACACAATGGAGTGGTCGTCGTCTCCGCCGAGCTCCTCAACAAGCCGGCGCAAGATTAAGACTACGAGCAGCACTACATGACTACGCTGACAGCGTTCCGTCGAACGAACGAGTGGCGGTGCTCCATATTCGCCAGAATCGACTGAATCAACAGCTCGACGATCTCGGCCTTGTTCAATCGGCAAAGGAATCTGAGCGTGACGCCGCGGATGTACTCGTTAGGGCTCTGGAGATTGTTGCGGTGGTTCTGGCAGTTGAGGATCACCTCCGGGAGAACTTTGCCTCGGGAATCTGTCTTGTTAATGATCTCGAGGTAGAGGATGAGAAGCTTCTGGACGGTGTGGTCCTCGAAGGGGAGGACGTAGCGGATAATTGTGATGAAGAGCTGGGGAATTGTGTCGCCGTTGAGCAAGATCATGATTGCCTTCTTCATGGCTTCGACGTCGTTTCCTTCGAGAGCCGGAGACTATCGATCGGTTCTTGTCCTAGATGGGTGCCCAGCCATGTCCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

19.97

Weight (kDa)

4.87

Isoelectric Point (pI)

57.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 368
AatII GACGTC 1 cut(s) 471
AccB1I GGYRCC 1 cut(s) 520
AccII CGCG 1 cut(s) 233
AciI CCGC 6 cut(s) 52, 143, 231, 233, 266, 392
AclWI GGATC 1 cut(s) 294
AcyI GRCGYC 2 cut(s) 228, 468
AfaI GTAC 2 cut(s) 19, 240
AfiI CCNNNNNNNGG 1 cut(s) 379
AflIII ACRYGT 1 cut(s) 6
AgsI TTSAA 1 cut(s) 203
AluBI AGCT 4 cut(s) 59, 181, 355, 412
AluI AGCT 4 cut(s) 59, 181, 355, 412
Alw21I GWGCWC 2 cut(s) 61, 150
Alw26I GTCTC 2 cut(s) 53, 484
AlwI GGATC 1 cut(s) 294
Ama87I CYCGRG 2 cut(s) 310, 335
AoxI GGCC 1 cut(s) 193
ApeKI GCWGC 1 cut(s) 95
AspLEI GCGC 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 370
AsuC2I CCSGG 1 cut(s) 296
AsuHPI GGTGA 1 cut(s) 281
AvaI CYCGRG 2 cut(s) 310, 335
AvaII GGWCC 1 cut(s) 370
BaeGI GKGCMC 1 cut(s) 525
BanI GGYRCC 1 cut(s) 520
BanII GRGCYC 2 cut(s) 61, 253
Bbv12I GWGCWC 2 cut(s) 61, 150
BbvI GCAGC 1 cut(s) 107
BccI CCATC 1 cut(s) 510
BceAI ACGGC 1 cut(s) 413
BcnI CCSGG 1 cut(s) 296
BcoDI GTCTC 2 cut(s) 53, 484
BfaI CTAG 1 cut(s) 513
BisI GCNGC 2 cut(s) 96, 231
BlsI GCNGC 2 cut(s) 97, 232
Bme1390I CCNGG 1 cut(s) 296
Bme18I GGWCC 1 cut(s) 370
BmeT110I CYCGRG 2 cut(s) 310, 335
BmgT120I GGNCC 1 cut(s) 370
BmiI GGNNCC 1 cut(s) 522
BmrFI CCNGG 1 cut(s) 296
BpmI CTGGAG 1 cut(s) 275
BpuMI CCSGG 1 cut(s) 296
Bsa29I ATCGAT 1 cut(s) 497
BsaHI GRCGYC 2 cut(s) 228, 468
BsaJI CCNNGG 2 cut(s) 231, 309
BsaXI ACNNNNNCTCC 2 cut(s) 28, 58
Bsc4I CCNNNNNNNGG 1 cut(s) 379
Bse118I RCCGGY 2 cut(s) 12, 71
BseCI ATCGAT 1 cut(s) 497
BseDI CCNNGG 2 cut(s) 231, 309
BseGI GGATG 2 cut(s) 241, 352
BseLI CCNNNNNNNGG 1 cut(s) 379
BseMII CTCAG 1 cut(s) 210
BseRI GAGGAG 1 cut(s) 51
BseSI GKGCMC 1 cut(s) 525
BseXI GCAGC 1 cut(s) 107
BseYI CCCAGC 2 cut(s) 412, 524
Bsh1236I CGCG 1 cut(s) 233
Bsh1285I CGRYCG 1 cut(s) 501
BshFI GGCC 1 cut(s) 195
BshNI GGYRCC 1 cut(s) 520
BshVI ATCGAT 1 cut(s) 497
BsiEI CGRYCG 1 cut(s) 501
BsiHKAI GWGCWC 2 cut(s) 61, 150
BsiHKCI CYCGRG 2 cut(s) 310, 335
BsiSI CCGG 4 cut(s) 13, 72, 295, 487
BslI CCNNNNNNNGG 1 cut(s) 379
BsmAI GTCTC 2 cut(s) 53, 484
BsmBI CGTCTC 1 cut(s) 53
BsnI GGCC 1 cut(s) 195
BsoBI CYCGRG 2 cut(s) 310, 335
Bsp1286I GDGCHC 4 cut(s) 61, 150, 253, 525
Bsp1407I TGTACA 1 cut(s) 17
Bsp143I GATC 5 cut(s) 187, 286, 331, 439, 498
BspACI CCGC 6 cut(s) 52, 143, 231, 233, 266, 392
BspANI GGCC 1 cut(s) 195
BspCNI CTCAG 1 cut(s) 211
BspDI ATCGAT 1 cut(s) 497
BspFNI CGCG 1 cut(s) 233
BspHI TCATGA 1 cut(s) 442
BspLI GGNNCC 1 cut(s) 522
BspPI GGATC 1 cut(s) 294
BspQI GCTCTTC 1 cut(s) 402
BspT107I GGYRCC 1 cut(s) 520
BsrFI RCCGGY 2 cut(s) 12, 71
BsrGI TGTACA 1 cut(s) 17
BssAI RCCGGY 2 cut(s) 12, 71
BssECI CCNNGG 2 cut(s) 231, 309
BssMI GATC 5 cut(s) 187, 286, 331, 439, 498
BssNI GRCGYC 2 cut(s) 228, 468
Bst4CI ACNGT 1 cut(s) 365
Bst6I CTCTTC 1 cut(s) 402
BstACI GRCGYC 2 cut(s) 228, 468
BstAUI TGTACA 1 cut(s) 17
BstC8I GCNNGC 1 cut(s) 73
BstDEI CTNAG 1 cut(s) 219
BstDSI CCRYGG 1 cut(s) 231
BstF5I GGATG 2 cut(s) 241, 352
BstFNI CGCG 1 cut(s) 233
BstHHI GCGC 1 cut(s) 77
BstKTI GATC 5 cut(s) 190, 289, 334, 442, 501
BstMAI GTCTC 2 cut(s) 53, 484
BstMBI GATC 5 cut(s) 187, 286, 331, 439, 498
BstMCI CGRYCG 1 cut(s) 501
BstNSI RCATGY 1 cut(s) 10
BstSCI CCNGG 1 cut(s) 294
BstSLI GKGCMC 1 cut(s) 525
BstUI CGCG 1 cut(s) 233
BstV1I GCAGC 1 cut(s) 107
Bsu15I ATCGAT 1 cut(s) 497
BsuRI GGCC 1 cut(s) 195
BsuTUI ATCGAT 1 cut(s) 497
BtgI CCRYGG 1 cut(s) 231
BtsCI GGATG 2 cut(s) 241, 352
Cac8I GCNNGC 1 cut(s) 73
CciI TCATGA 1 cut(s) 442
CfoI GCGC 1 cut(s) 77
Cfr10I RCCGGY 2 cut(s) 12, 71
Cfr13I GGNCC 1 cut(s) 370
Cfr42I CCGCGG 1 cut(s) 234
ClaI ATCGAT 1 cut(s) 497
CseI GACGC 1 cut(s) 236
Csp6I GTAC 2 cut(s) 18, 239
CviAII CATG 5 cut(s) 7, 104, 443, 458, 530
CviQI GTAC 2 cut(s) 18, 239
DdeI CTNAG 1 cut(s) 219
DpnI GATC 5 cut(s) 189, 288, 333, 441, 500
DpnII GATC 5 cut(s) 187, 286, 331, 439, 498
DrdI GACNNNNNNGTC 1 cut(s) 368
DseDI GACNNNNNNGTC 1 cut(s) 368
Eam1104I CTCTTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 402
EciI GGCGGA 1 cut(s) 41
Ecl136II GAGCTC 1 cut(s) 59
Eco24I GRGCYC 2 cut(s) 61, 253
Eco47I GGWCC 1 cut(s) 370
Eco53kI GAGCTC 1 cut(s) 59
Eco88I CYCGRG 2 cut(s) 310, 335
EcoICRI GAGCTC 1 cut(s) 59
EcoT38I GRGCYC 2 cut(s) 61, 253
Esp3I CGTCTC 1 cut(s) 53
FaeI CATG 5 cut(s) 10, 107, 446, 461, 533
FaiI YATR 6 cut(s) 8, 105, 153, 444, 459, 531
FatI CATG 5 cut(s) 6, 103, 442, 457, 529
Fnu4HI GCNGC 2 cut(s) 96, 231
FokI GGATG 2 cut(s) 248, 359
FriOI GRGCYC 2 cut(s) 61, 253
Fsp4HI GCNGC 2 cut(s) 96, 231
FspBI CTAG 1 cut(s) 513
GlaI GCGC 1 cut(s) 76
GluI GCNGC 2 cut(s) 96, 231
GsaI CCCAGC 2 cut(s) 416, 528
GsuI CTGGAG 1 cut(s) 275
HaeIII GGCC 1 cut(s) 195
HapII CCGG 4 cut(s) 13, 72, 295, 487
HgaI GACGC 1 cut(s) 236
HhaI GCGC 1 cut(s) 77
Hin1I GRCGYC 2 cut(s) 228, 468
Hin1II CATG 5 cut(s) 10, 107, 446, 461, 533
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 4 cut(s) 163, 172, 215, 315
HpaII CCGG 4 cut(s) 13, 72, 295, 487
HphI GGTGA 1 cut(s) 281
Hpy166II GTNNAC 1 cut(s) 18
Hpy188I TCNGA 2 cut(s) 220, 536
Hpy188III TCNNGA 6 cut(s) 254, 312, 335, 359, 443, 481
Hpy8I GTNNAC 1 cut(s) 18
Hpy99I CGWCG 5 cut(s) 48, 130, 188, 470, 473
HpyAV CCTTC 3 cut(s) 371, 461, 487
HpyCH4III ACNGT 1 cut(s) 365
HpyCH4IV ACGT 2 cut(s) 387, 468
HpyF3I CTNAG 1 cut(s) 219
HpySE526I ACGT 2 cut(s) 387, 468
Hsp92I GRCGYC 2 cut(s) 228, 468
Hsp92II CATG 5 cut(s) 10, 107, 446, 461, 533
HspAI GCGC 1 cut(s) 75
KroI GCCGGC 1 cut(s) 71
KroNI GCCGGC 1 cut(s) 73
KspI CCGCGG 1 cut(s) 234
Kzo9I GATC 5 cut(s) 187, 286, 331, 439, 498
LguI GCTCTTC 1 cut(s) 402
LmnI GCTCC 2 cut(s) 64, 153
LpnPI CCDG 9 cut(s) 26, 85, 173, 239, 260, 308, 344, 398, 500
Lsp1109I GCAGC 1 cut(s) 107
MaeI CTAG 1 cut(s) 513
MaeII ACGT 2 cut(s) 387, 468
MaeIII GTNAC 1 cut(s) 224
MalI GATC 5 cut(s) 189, 288, 333, 441, 500
MboI GATC 5 cut(s) 187, 286, 331, 439, 498
MboII GAAGA 2 cut(s) 419, 446
MhlI GDGCHC 4 cut(s) 61, 150, 253, 525
MluCI AATT 2 cut(s) 397, 418
MnlI CCTC 8 cut(s) 72, 277, 302, 319, 331, 337, 376, 383
MroNI GCCGGC 1 cut(s) 71
MseI TTAA 2 cut(s) 83, 327
MspA1I CMGCKG 1 cut(s) 233
MspI CCGG 4 cut(s) 13, 72, 295, 487
MspR9I CCNGG 1 cut(s) 296
MvnI CGCG 1 cut(s) 233
NaeI GCCGGC 1 cut(s) 73
NciI CCSGG 1 cut(s) 296
NdeII GATC 5 cut(s) 187, 286, 331, 439, 498
NgoMIV GCCGGC 1 cut(s) 71
NlaIII CATG 5 cut(s) 10, 107, 446, 461, 533
NlaIV GGNNCC 1 cut(s) 522
NmeAIII GCCGAG 2 cut(s) 80, 171
NmuCI GTSAC 1 cut(s) 224
NspI RCATGY 1 cut(s) 10
PaeR7I CTCGAG 1 cut(s) 335
PagI TCATGA 1 cut(s) 442
PciI ACATGT 1 cut(s) 6
PciSI GCTCTTC 1 cut(s) 402
PcsI WCGNNNNNNNCGW 4 cut(s) 52, 117, 163, 477
PdiI GCCGGC 1 cut(s) 73
PfeI GAWTC 4 cut(s) 163, 172, 215, 315
PfoI TCCNGGA 1 cut(s) 294
PkrI GCNGC 2 cut(s) 97, 232
Ple19I CGATCG 1 cut(s) 501
PscI ACATGT 1 cut(s) 6
Psp124BI GAGCTC 1 cut(s) 61
PspFI CCCAGC 2 cut(s) 412, 524
PspN4I GGNNCC 1 cut(s) 522
PspPI GGNCC 1 cut(s) 370
PvuI CGATCG 1 cut(s) 501
RsaI GTAC 2 cut(s) 19, 240
RsaNI GTAC 2 cut(s) 18, 239
SacI GAGCTC 1 cut(s) 61
SacII CCGCGG 1 cut(s) 234
SapI GCTCTTC 1 cut(s) 402
SaqAI TTAA 2 cut(s) 83, 327
SatI GCNGC 2 cut(s) 96, 231
Sau3AI GATC 5 cut(s) 187, 286, 331, 439, 498
Sau96I GGNCC 1 cut(s) 370
ScrFI CCNGG 1 cut(s) 296
SduI GDGCHC 4 cut(s) 61, 150, 253, 525
SetI ASST 8 cut(s) 61, 183, 294, 342, 357, 390, 414, 471
Sfr274I CTCGAG 1 cut(s) 335
Sfr303I CCGCGG 1 cut(s) 234
SgrBI CCGCGG 1 cut(s) 234
SinI GGWCC 1 cut(s) 370
SlaI CTCGAG 1 cut(s) 335
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
Sse9I AATT 2 cut(s) 397, 418
SsiI CCGC 6 cut(s) 52, 143, 231, 233, 266, 392
SspMI CTAG 1 cut(s) 513
SstI GAGCTC 1 cut(s) 61
StyD4I CCNGG 1 cut(s) 294
TaaI ACNGT 1 cut(s) 365
TaiI ACGT 2 cut(s) 390, 471
TaqI TCGA 8 cut(s) 128, 166, 183, 336, 375, 465, 480, 497
TasI AATT 2 cut(s) 397, 418
TatI WGTACW 2 cut(s) 17, 238
TauI GCSGC 1 cut(s) 233
TfiI GAWTC 4 cut(s) 163, 172, 215, 315
Tru1I TTAA 2 cut(s) 83, 327
Tru9I TTAA 2 cut(s) 83, 327
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 2 cut(s) 420, 446
TspGWI ACGGA 1 cut(s) 114
VpaK11BI GGWCC 1 cut(s) 370
XceI RCATGY 1 cut(s) 10
XhoI CTCGAG 1 cut(s) 335
XspI CTAG 1 cut(s) 513
ZraI GACGTC 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.