RLG00000013047

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0004606
Physical Location & Seq
Forward (+)
25344049 .. 25346803
2755 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013047

Sequence Viewer

Length: 687 bp
ATGGAGGACCGATCGATAATCTCCGGCGCATCCACCAGTAACTGCTCACCCTGCGGAAGCCTATACACAGACATGACTGCGCTGACGGCGTTCCATCGAACGAACGGGTGGCGGTGCTCCAGATTCGCCAGAATTGACGCTCAACGGCTAGACGATCTCGGCCTCGTTCAATCGGCAAAGGAATCGGAGCGTGACGCCGCGGATGTACTCGTTAGGGCTCTGGAGATTGTTGCAGAGGTTCTGGCAGCTGAGGATCATCTCCGGGAGAACTTTGCCTCGGGAATCTGTCTTGTCAATGATCTCGAGGTAGAGGAGGAGAAACTTCTGGACGGTGTGGTCCTCGAAGGGGAGGACGTAGCGGATAATAGTGATGAAGAGCTGGGGAATTGTGTCGCCGTTGAGCAAGAGCATGATGGCCTTCTTCATGGCTTCAATCTTGGCTTCGATGTCGTTTCCTTCGAGAGCCGGAGACTATCGATCGTGATTGATGGCCGGTTACCCTCATCACTTCCGCCCCTCCAGTGGGGACTGGAACTGGGCACACCCACCTCCTCAGCTCTCCCACCCACAATCTCCTTACCCAAATTTTCCTCCCCAAAACCCCACCAATTTAAACATCTATCCCCCTCAACCTTCCGCCTTTCCACCTCCGCAACCTCAACCGCCGCCGCAACCGTCAAACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

229

Amino Acids

24.64

Weight (kDa)

4.67

Isoelectric Point (pI)

39.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 335
AccII CGCG 1 cut(s) 200
AclWI GGATC 1 cut(s) 261
AcoI YGGCCR 1 cut(s) 490
AcsI RAATTY 1 cut(s) 584
AcyI GRCGYC 1 cut(s) 195
AfaI GTAC 1 cut(s) 207
AfiI CCNNNNNNNGG 3 cut(s) 346, 522, 523
AgsI TTSAA 2 cut(s) 170, 433
AluBI AGCT 3 cut(s) 248, 379, 557
AluI AGCT 3 cut(s) 248, 379, 557
Alw21I GWGCWC 1 cut(s) 119
Alw26I GTCTC 1 cut(s) 463
AlwI GGATC 1 cut(s) 261
AlwNI CAGNNNCTG 1 cut(s) 42
Ama87I CYCGRG 2 cut(s) 277, 302
AoxI GGCC 3 cut(s) 160, 415, 490
ApeKI GCWGC 1 cut(s) 245
ApoI RAATTY 1 cut(s) 584
AspLEI GCGC 2 cut(s) 29, 82
AspS9I GGNCC 2 cut(s) 7, 337
AsuC2I CCSGG 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 39
AvaI CYCGRG 2 cut(s) 277, 302
AvaII GGWCC 2 cut(s) 7, 337
BaeGI GKGCMC 1 cut(s) 542
BanII GRGCYC 1 cut(s) 220
Bbv12I GWGCWC 1 cut(s) 119
BbvCI CCTCAGC 2 cut(s) 249, 553
BbvI GCAGC 1 cut(s) 257
BccI CCATC 3 cut(s) 102, 407, 482
BceAI ACGGC 3 cut(s) 102, 161, 380
BcgI CGANNNNNNTGC 2 cut(s) 165, 199
BcnI CCSGG 1 cut(s) 263
BcoDI GTCTC 1 cut(s) 463
BfaI CTAG 1 cut(s) 149
BisI GCNGC 4 cut(s) 198, 246, 666, 669
BlsI GCNGC 4 cut(s) 199, 247, 667, 670
Bme1390I CCNGG 1 cut(s) 263
Bme18I GGWCC 2 cut(s) 7, 337
BmeT110I CYCGRG 2 cut(s) 277, 302
BmgT120I GGNCC 2 cut(s) 7, 337
BmrFI CCNGG 1 cut(s) 263
BmrI ACTGGG 1 cut(s) 545
BmsI GCATC 1 cut(s) 38
BmuI ACTGGG 1 cut(s) 545
BpmI CTGGAG 3 cut(s) 103, 242, 503
Bpu10I CCTNAGC 2 cut(s) 249, 553
BpuMI CCSGG 1 cut(s) 263
Bsa29I ATCGAT 2 cut(s) 14, 476
BsaHI GRCGYC 1 cut(s) 195
BsaJI CCNNGG 2 cut(s) 198, 276
Bsc4I CCNNNNNNNGG 3 cut(s) 346, 522, 523
Bse118I RCCGGY 1 cut(s) 492
Bse1I ACTGG 4 cut(s) 36, 520, 534, 540
BseCI ATCGAT 2 cut(s) 14, 476
BseDI CCNNGG 2 cut(s) 198, 276
BseGI GGATG 2 cut(s) 29, 208
BseLI CCNNNNNNNGG 3 cut(s) 346, 522, 523
BseMII CTCAG 2 cut(s) 240, 567
BseNI ACTGG 4 cut(s) 36, 520, 534, 540
BseRI GAGGAG 3 cut(s) 326, 329, 541
BseSI GKGCMC 1 cut(s) 542
BseXI GCAGC 1 cut(s) 257
BseYI CCCAGC 1 cut(s) 379
Bsh1236I CGCG 1 cut(s) 200
Bsh1285I CGRYCG 2 cut(s) 14, 480
BshFI GGCC 3 cut(s) 162, 417, 492
BshVI ATCGAT 2 cut(s) 14, 476
BsiEI CGRYCG 2 cut(s) 14, 480
BsiHKAI GWGCWC 1 cut(s) 119
BsiHKCI CYCGRG 2 cut(s) 277, 302
BsiSI CCGG 4 cut(s) 24, 262, 466, 493
BslFI GGGAC 1 cut(s) 540
BslI CCNNNNNNNGG 3 cut(s) 346, 522, 523
BsmAI GTCTC 1 cut(s) 463
BsmFI GGGAC 1 cut(s) 540
BsnI GGCC 3 cut(s) 162, 417, 492
BsoBI CYCGRG 2 cut(s) 277, 302
Bsp1286I GDGCHC 3 cut(s) 119, 220, 542
Bsp143I GATC 5 cut(s) 11, 154, 253, 298, 477
BspANI GGCC 3 cut(s) 162, 417, 492
BspCNI CTCAG 2 cut(s) 241, 566
BspDI ATCGAT 2 cut(s) 14, 476
BspFNI CGCG 1 cut(s) 200
BspPI GGATC 1 cut(s) 261
BspQI GCTCTTC 1 cut(s) 369
BsrFI RCCGGY 1 cut(s) 492
BsrI ACTGG 4 cut(s) 36, 520, 534, 540
BssAI RCCGGY 1 cut(s) 492
BssECI CCNNGG 2 cut(s) 198, 276
BssMI GATC 5 cut(s) 11, 154, 253, 298, 477
BssNI GRCGYC 1 cut(s) 195
Bst4CI ACNGT 2 cut(s) 332, 676
Bst6I CTCTTC 1 cut(s) 369
BstACI GRCGYC 1 cut(s) 195
BstDEI CTNAG 2 cut(s) 249, 553
BstDSI CCRYGG 1 cut(s) 198
BstEII GGTNACC 1 cut(s) 495
BstF5I GGATG 2 cut(s) 29, 208
BstFNI CGCG 1 cut(s) 200
BstHHI GCGC 2 cut(s) 29, 82
BstKTI GATC 5 cut(s) 14, 157, 256, 301, 480
BstMAI GTCTC 1 cut(s) 463
BstMBI GATC 5 cut(s) 11, 154, 253, 298, 477
BstMCI CGRYCG 2 cut(s) 14, 480
BstMWI GCNNNNNNNGC 2 cut(s) 51, 86
BstPI GGTNACC 1 cut(s) 495
BstSCI CCNGG 1 cut(s) 261
BstSLI GKGCMC 1 cut(s) 542
BstUI CGCG 1 cut(s) 200
BstV1I GCAGC 1 cut(s) 257
Bsu15I ATCGAT 2 cut(s) 14, 476
BsuRI GGCC 3 cut(s) 162, 417, 492
BsuTUI ATCGAT 2 cut(s) 14, 476
BtgI CCRYGG 1 cut(s) 198
BtsCI GGATG 2 cut(s) 29, 208
BtsIMutI CAGTG 1 cut(s) 527
CaiI CAGNNNCTG 1 cut(s) 42
CfoI GCGC 2 cut(s) 29, 82
Cfr10I RCCGGY 1 cut(s) 492
Cfr13I GGNCC 2 cut(s) 7, 337
Cfr42I CCGCGG 1 cut(s) 201
ClaI ATCGAT 2 cut(s) 14, 476
CseI GACGC 2 cut(s) 146, 203
Csp6I GTAC 1 cut(s) 206
CviAII CATG 3 cut(s) 73, 410, 425
CviQI GTAC 1 cut(s) 206
DdeI CTNAG 2 cut(s) 249, 553
DpnI GATC 5 cut(s) 13, 156, 255, 300, 479
DpnII GATC 5 cut(s) 11, 154, 253, 298, 477
DraI TTTAAA 1 cut(s) 613
DrdI GACNNNNNNGTC 1 cut(s) 335
DseDI GACNNNNNNGTC 1 cut(s) 335
EaeI YGGCCR 1 cut(s) 490
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
EciI GGCGGA 2 cut(s) 501, 626
Eco24I GRGCYC 1 cut(s) 220
Eco47I GGWCC 2 cut(s) 7, 337
Eco88I CYCGRG 2 cut(s) 277, 302
Eco91I GGTNACC 1 cut(s) 495
EcoO65I GGTNACC 1 cut(s) 495
EcoT38I GRGCYC 1 cut(s) 220
FaeI CATG 3 cut(s) 76, 413, 428
FaiI YATR 4 cut(s) 64, 74, 411, 426
FaqI GGGAC 1 cut(s) 540
FatI CATG 3 cut(s) 72, 409, 424
Fnu4HI GCNGC 4 cut(s) 198, 246, 666, 669
FokI GGATG 2 cut(s) 16, 215
FriOI GRGCYC 1 cut(s) 220
Fsp4HI GCNGC 4 cut(s) 198, 246, 666, 669
FspBI CTAG 1 cut(s) 149
GlaI GCGC 2 cut(s) 28, 81
GluI GCNGC 4 cut(s) 198, 246, 666, 669
GsaI CCCAGC 1 cut(s) 383
GsuI CTGGAG 3 cut(s) 103, 242, 503
HaeIII GGCC 3 cut(s) 162, 417, 492
HapII CCGG 4 cut(s) 24, 262, 466, 493
HgaI GACGC 2 cut(s) 146, 203
HhaI GCGC 2 cut(s) 29, 82
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 3 cut(s) 76, 413, 428
Hin6I GCGC 2 cut(s) 27, 80
HinP1I GCGC 2 cut(s) 27, 80
HinfI GANTC 3 cut(s) 123, 182, 282
HpaII CCGG 4 cut(s) 24, 262, 466, 493
HphI GGTGA 1 cut(s) 39
Hpy188I TCNGA 1 cut(s) 187
Hpy188III TCNNGA 7 cut(s) 120, 221, 279, 302, 326, 460, 481
HpyAV CCTTC 4 cut(s) 338, 428, 466, 643
HpyCH4III ACNGT 2 cut(s) 332, 676
HpyCH4IV ACGT 1 cut(s) 354
HpyCH4V TGCA 1 cut(s) 233
HpyF10VI GCNNNNNNNGC 2 cut(s) 51, 86
HpyF3I CTNAG 2 cut(s) 249, 553
HpySE526I ACGT 1 cut(s) 354
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 3 cut(s) 76, 413, 428
HspAI GCGC 2 cut(s) 27, 80
KspI CCGCGG 1 cut(s) 201
Kzo9I GATC 5 cut(s) 11, 154, 253, 298, 477
LguI GCTCTTC 1 cut(s) 369
LmnI GCTCC 2 cut(s) 122, 187
Lsp1109I GCAGC 1 cut(s) 257
LweI GCATC 1 cut(s) 38
MaeI CTAG 1 cut(s) 149
MaeII ACGT 1 cut(s) 354
MaeIII GTNAC 3 cut(s) 38, 191, 495
MalI GATC 5 cut(s) 13, 156, 255, 300, 479
MboI GATC 5 cut(s) 11, 154, 253, 298, 477
MboII GAAGA 2 cut(s) 386, 413
MhlI GDGCHC 3 cut(s) 119, 220, 542
MluCI AATT 4 cut(s) 132, 385, 584, 608
MseI TTAA 1 cut(s) 612
MslI CAYNNNNRTG 1 cut(s) 71
MspA1I CMGCKG 2 cut(s) 200, 248
MspI CCGG 4 cut(s) 24, 262, 466, 493
MspR9I CCNGG 1 cut(s) 263
MvnI CGCG 1 cut(s) 200
MwoI GCNNNNNNNGC 2 cut(s) 51, 86
NciI CCSGG 1 cut(s) 263
NdeII GATC 5 cut(s) 11, 154, 253, 298, 477
NlaIII CATG 3 cut(s) 76, 413, 428
NmeAIII GCCGAG 1 cut(s) 138
NmuCI GTSAC 1 cut(s) 191
PaeR7I CTCGAG 1 cut(s) 302
PciSI GCTCTTC 1 cut(s) 369
PcsI WCGNNNNNNNCGW 1 cut(s) 456
PfeI GAWTC 3 cut(s) 123, 182, 282
PfoI TCCNGGA 1 cut(s) 261
PkrI GCNGC 4 cut(s) 199, 247, 667, 670
Ple19I CGATCG 2 cut(s) 14, 480
PspEI GGTNACC 1 cut(s) 495
PspFI CCCAGC 1 cut(s) 379
PspPI GGNCC 2 cut(s) 7, 337
PstNI CAGNNNCTG 1 cut(s) 42
PvuI CGATCG 2 cut(s) 14, 480
PvuII CAGCTG 1 cut(s) 248
RsaI GTAC 1 cut(s) 207
RsaNI GTAC 1 cut(s) 206
RseI CAYNNNNRTG 1 cut(s) 71
SacII CCGCGG 1 cut(s) 201
SapI GCTCTTC 1 cut(s) 369
SaqAI TTAA 1 cut(s) 612
SatI GCNGC 4 cut(s) 198, 246, 666, 669
Sau3AI GATC 5 cut(s) 11, 154, 253, 298, 477
Sau96I GGNCC 2 cut(s) 7, 337
ScrFI CCNGG 1 cut(s) 263
SduI GDGCHC 3 cut(s) 119, 220, 542
SfaNI GCATC 1 cut(s) 38
Sfr274I CTCGAG 1 cut(s) 302
Sfr303I CCGCGG 1 cut(s) 201
SgrBI CCGCGG 1 cut(s) 201
SinI GGWCC 2 cut(s) 7, 337
SlaI CTCGAG 1 cut(s) 302
SmiMI CAYNNNNRTG 1 cut(s) 71
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
Sse9I AATT 4 cut(s) 132, 385, 584, 608
SspMI CTAG 1 cut(s) 149
StyD4I CCNGG 1 cut(s) 261
TaaI ACNGT 2 cut(s) 332, 676
TaiI ACGT 1 cut(s) 357
TaqI TCGA 7 cut(s) 14, 97, 303, 342, 444, 459, 476
TaqII GACCGA 1 cut(s) 24
TasI AATT 4 cut(s) 132, 385, 584, 608
TatI WGTACW 1 cut(s) 205
TauI GCSGC 3 cut(s) 200, 668, 671
TfiI GAWTC 3 cut(s) 123, 182, 282
Tru1I TTAA 1 cut(s) 612
Tru9I TTAA 1 cut(s) 612
TscAI CASTG 1 cut(s) 527
TseFI GTSAC 1 cut(s) 191
TseI GCWGC 1 cut(s) 245
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 2 cut(s) 387, 413
TspRI CASTG 1 cut(s) 527
VpaK11BI GGWCC 2 cut(s) 7, 337
XapI RAATTY 1 cut(s) 584
XhoI CTCGAG 1 cut(s) 302
XspI CTAG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.