Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0004606

Physical Location & Seq

Genomic Coordinates Forward (+)

28054738 .. 28056238

Gene Structure 1501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023771

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGAGGACCGATCGATAATCTCCGGCGCATCCACCAGTAACTGCTCACCCTGCGGAAGCCTATACACAGACATGACTGCGCTGACGGCGTTCCATCGAACGAACGGGTGGCGGTGCTCCAGATTCGCCAGAATCGACGCTCAACGGCTAGACGATCTCGGCCTCGTTCAATCGGCAAAGGAATCGGAGCGTGACGCCGCGGATGTACTCGTTAGGGCTCTGGAGATTGTTGCAGAGGTTCTGGCAGCTGAGGATCATCTCCGGGAGAACTTTGCCTCGGGAATCTGTCTTGTCAATGATCTCGAGGTAGAGGAGGAGAAACTTCTGGACGGTGTGGTCCTCGAAGGGGAGGACGTAGCGGATAATAGTGATGAAGAGCTGGGGAATTGTGTCGCCGTTGAGCAAGAGCATGATGGCCTTCTTCATGGCTTCAATCTTGGCTTCGATGTCGTTTCCTTCGAGAGCCGGAGACTATCGATCGATAAGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

164

Amino Acids

17.87

Weight (kDa)

4.32

Isoelectric Point (pI)

32.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004606)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20100
fragaria_vesca	FvH4_6g30220
prunus_persica	Prupe.3G081500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0136461
rosa_laevigata	RLG00000009381 RLG00000013047 RLG00000019533 RLG00000022132 RLG00000023771 RLG00000025350 RLG00000025891 RLG00000033413 RLG00000036964
rosa_multiflora	Rmu_co8388101.1_g000001 Rmu_sc0001998.1_g000002
rosa_roxburghii	Rroxscaffold_2G00108270
rosa_rugosa	Rorug02G0330700
rosa_samantha	Rh1AG307300 Rh1BG076100 Rh1CG288200 Rh1DG098700 Rh2AG381700 Rh2BG388400 Rh2CG368100 Rh2DG404800 Rh3DG174900 Rh5AG405900 Rh6AG380200
rosa_wichuraiana	Rw2G031200 Rw2G046630 Rw7G033630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	335
AccII	CGCG	1 cut(s)	200
AciI	CCGC	5 cut(s)	54, 112, 198, 200, 359
AclWI	GGATC	1 cut(s)	261
AcyI	GRCGYC	1 cut(s)	195
AfaI	GTAC	1 cut(s)	207
AfiI	CCNNNNNNNGG	1 cut(s)	346
AgsI	TTSAA	2 cut(s)	170, 433
AluBI	AGCT	2 cut(s)	248, 379
AluI	AGCT	2 cut(s)	248, 379
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	1 cut(s)	463
AlwI	GGATC	1 cut(s)	261
AlwNI	CAGNNNCTG	1 cut(s)	42
Ama87I	CYCGRG	2 cut(s)	277, 302
AoxI	GGCC	2 cut(s)	160, 415
ApeKI	GCWGC	1 cut(s)	245
AspLEI	GCGC	2 cut(s)	29, 82
AspS9I	GGNCC	2 cut(s)	7, 337
AsuC2I	CCSGG	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	39
AvaI	CYCGRG	2 cut(s)	277, 302
AvaII	GGWCC	2 cut(s)	7, 337
BanII	GRGCYC	1 cut(s)	220
Bbv12I	GWGCWC	1 cut(s)	119
BbvCI	CCTCAGC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	257
BccI	CCATC	2 cut(s)	102, 407
BceAI	ACGGC	3 cut(s)	102, 161, 380
BcgI	CGANNNNNNTGC	2 cut(s)	165, 199
BcnI	CCSGG	1 cut(s)	263
BcoDI	GTCTC	1 cut(s)	463
BfaI	CTAG	1 cut(s)	149
BglII	AGATCT	1 cut(s)	486
BisI	GCNGC	2 cut(s)	198, 246
BlsI	GCNGC	2 cut(s)	199, 247
Bme1390I	CCNGG	1 cut(s)	263
Bme18I	GGWCC	2 cut(s)	7, 337
BmeT110I	CYCGRG	2 cut(s)	277, 302
BmgT120I	GGNCC	2 cut(s)	7, 337
BmrFI	CCNGG	1 cut(s)	263
BmsI	GCATC	1 cut(s)	38
BpmI	CTGGAG	2 cut(s)	103, 242
Bpu10I	CCTNAGC	1 cut(s)	249
BpuMI	CCSGG	1 cut(s)	263
Bsa29I	ATCGAT	3 cut(s)	14, 476, 480
BsaHI	GRCGYC	1 cut(s)	195
BsaJI	CCNNGG	2 cut(s)	198, 276
Bsc4I	CCNNNNNNNGG	1 cut(s)	346
Bse1I	ACTGG	1 cut(s)	36
BseCI	ATCGAT	3 cut(s)	14, 476, 480
BseDI	CCNNGG	2 cut(s)	198, 276
BseGI	GGATG	2 cut(s)	29, 208
BseLI	CCNNNNNNNGG	1 cut(s)	346
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	1 cut(s)	36
BseRI	GAGGAG	2 cut(s)	326, 329
BseXI	GCAGC	1 cut(s)	257
BseYI	CCCAGC	1 cut(s)	379
Bsh1236I	CGCG	1 cut(s)	200
Bsh1285I	CGRYCG	2 cut(s)	14, 480
BshFI	GGCC	2 cut(s)	162, 417
BshVI	ATCGAT	3 cut(s)	14, 476, 480
BsiEI	CGRYCG	2 cut(s)	14, 480
BsiHKAI	GWGCWC	1 cut(s)	119
BsiHKCI	CYCGRG	2 cut(s)	277, 302
BsiSI	CCGG	3 cut(s)	24, 262, 466
BslI	CCNNNNNNNGG	1 cut(s)	346
BsmAI	GTCTC	1 cut(s)	463
BsnI	GGCC	2 cut(s)	162, 417
BsoBI	CYCGRG	2 cut(s)	277, 302
Bsp1286I	GDGCHC	2 cut(s)	119, 220
Bsp143I	GATC	6 cut(s)	11, 154, 253, 298, 477, 486
BspACI	CCGC	5 cut(s)	54, 112, 198, 200, 359
BspANI	GGCC	2 cut(s)	162, 417
BspCNI	CTCAG	1 cut(s)	241
BspDI	ATCGAT	3 cut(s)	14, 476, 480
BspFNI	CGCG	1 cut(s)	200
BspPI	GGATC	1 cut(s)	261
BspQI	GCTCTTC	1 cut(s)	369
BsrI	ACTGG	1 cut(s)	36
BssECI	CCNNGG	2 cut(s)	198, 276
BssMI	GATC	6 cut(s)	11, 154, 253, 298, 477, 486
BssNI	GRCGYC	1 cut(s)	195
Bst4CI	ACNGT	1 cut(s)	332
Bst6I	CTCTTC	1 cut(s)	369
BstACI	GRCGYC	1 cut(s)	195
BstDEI	CTNAG	1 cut(s)	249
BstDSI	CCRYGG	1 cut(s)	198
BstF5I	GGATG	2 cut(s)	29, 208
BstFNI	CGCG	1 cut(s)	200
BstHHI	GCGC	2 cut(s)	29, 82
BstKTI	GATC	6 cut(s)	14, 157, 256, 301, 480, 489
BstMAI	GTCTC	1 cut(s)	463
BstMBI	GATC	6 cut(s)	11, 154, 253, 298, 477, 486
BstMCI	CGRYCG	2 cut(s)	14, 480
BstMWI	GCNNNNNNNGC	2 cut(s)	51, 86
BstSCI	CCNGG	1 cut(s)	261
BstUI	CGCG	1 cut(s)	200
BstV1I	GCAGC	1 cut(s)	257
BstX2I	RGATCY	1 cut(s)	486
BstYI	RGATCY	1 cut(s)	486
Bsu15I	ATCGAT	3 cut(s)	14, 476, 480
BsuRI	GGCC	2 cut(s)	162, 417
BsuTUI	ATCGAT	3 cut(s)	14, 476, 480
BtgI	CCRYGG	1 cut(s)	198
BtsCI	GGATG	2 cut(s)	29, 208
CaiI	CAGNNNCTG	1 cut(s)	42
CfoI	GCGC	2 cut(s)	29, 82
Cfr13I	GGNCC	2 cut(s)	7, 337
Cfr42I	CCGCGG	1 cut(s)	201
ClaI	ATCGAT	3 cut(s)	14, 476, 480
CseI	GACGC	2 cut(s)	146, 203
Csp6I	GTAC	1 cut(s)	206
CviAII	CATG	3 cut(s)	73, 410, 425
CviQI	GTAC	1 cut(s)	206
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	6 cut(s)	13, 156, 255, 300, 479, 488
DpnII	GATC	6 cut(s)	11, 154, 253, 298, 477, 486
DrdI	GACNNNNNNGTC	1 cut(s)	335
DseDI	GACNNNNNNGTC	1 cut(s)	335
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
Eco24I	GRGCYC	1 cut(s)	220
Eco47I	GGWCC	2 cut(s)	7, 337
Eco88I	CYCGRG	2 cut(s)	277, 302
EcoT38I	GRGCYC	1 cut(s)	220
FaeI	CATG	3 cut(s)	76, 413, 428
FaiI	YATR	4 cut(s)	64, 74, 411, 426
FatI	CATG	3 cut(s)	72, 409, 424
Fnu4HI	GCNGC	2 cut(s)	198, 246
FokI	GGATG	2 cut(s)	16, 215
FriOI	GRGCYC	1 cut(s)	220
Fsp4HI	GCNGC	2 cut(s)	198, 246
FspBI	CTAG	1 cut(s)	149
GlaI	GCGC	2 cut(s)	28, 81
GluI	GCNGC	2 cut(s)	198, 246
GsaI	CCCAGC	1 cut(s)	383
GsuI	CTGGAG	2 cut(s)	103, 242
HaeIII	GGCC	2 cut(s)	162, 417
HapII	CCGG	3 cut(s)	24, 262, 466
HgaI	GACGC	2 cut(s)	146, 203
HhaI	GCGC	2 cut(s)	29, 82
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	3 cut(s)	76, 413, 428
Hin6I	GCGC	2 cut(s)	27, 80
HinP1I	GCGC	2 cut(s)	27, 80
HinfI	GANTC	4 cut(s)	123, 132, 182, 282
HpaII	CCGG	3 cut(s)	24, 262, 466
HphI	GGTGA	1 cut(s)	39
Hpy188I	TCNGA	2 cut(s)	187, 491
Hpy188III	TCNNGA	6 cut(s)	120, 221, 279, 302, 326, 460
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	3 cut(s)	338, 428, 466
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	1 cut(s)	233
HpyF10VI	GCNNNNNNNGC	2 cut(s)	51, 86
HpyF3I	CTNAG	1 cut(s)	249
HpySE526I	ACGT	1 cut(s)	354
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	3 cut(s)	76, 413, 428
HspAI	GCGC	2 cut(s)	27, 80
KspI	CCGCGG	1 cut(s)	201
Kzo9I	GATC	6 cut(s)	11, 154, 253, 298, 477, 486
LguI	GCTCTTC	1 cut(s)	369
LmnI	GCTCC	2 cut(s)	122, 187
Lsp1109I	GCAGC	1 cut(s)	257
LweI	GCATC	1 cut(s)	38
MaeI	CTAG	1 cut(s)	149
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	2 cut(s)	38, 191
MalI	GATC	6 cut(s)	13, 156, 255, 300, 479, 488
MboI	GATC	6 cut(s)	11, 154, 253, 298, 477, 486
MboII	GAAGA	2 cut(s)	386, 413
MflI	RGATCY	1 cut(s)	486
MhlI	GDGCHC	2 cut(s)	119, 220
MluCI	AATT	1 cut(s)	385
MnlI	CCTC	9 cut(s)	173, 229, 244, 286, 298, 304, 307, 343, 350
MslI	CAYNNNNRTG	1 cut(s)	71
MspA1I	CMGCKG	2 cut(s)	200, 248
MspI	CCGG	3 cut(s)	24, 262, 466
MspR9I	CCNGG	1 cut(s)	263
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	2 cut(s)	51, 86
NciI	CCSGG	1 cut(s)	263
NdeII	GATC	6 cut(s)	11, 154, 253, 298, 477, 486
NlaIII	CATG	3 cut(s)	76, 413, 428
NmeAIII	GCCGAG	1 cut(s)	138
NmuCI	GTSAC	1 cut(s)	191
PaeR7I	CTCGAG	1 cut(s)	302
PciSI	GCTCTTC	1 cut(s)	369
PcsI	WCGNNNNNNNCGW	2 cut(s)	132, 456
PfeI	GAWTC	4 cut(s)	123, 132, 182, 282
PfoI	TCCNGGA	1 cut(s)	261
PkrI	GCNGC	2 cut(s)	199, 247
Ple19I	CGATCG	2 cut(s)	14, 480
PspFI	CCCAGC	1 cut(s)	379
PspPI	GGNCC	2 cut(s)	7, 337
PstNI	CAGNNNCTG	1 cut(s)	42
PsuI	RGATCY	1 cut(s)	486
PvuI	CGATCG	2 cut(s)	14, 480
PvuII	CAGCTG	1 cut(s)	248
RsaI	GTAC	1 cut(s)	207
RsaNI	GTAC	1 cut(s)	206
RseI	CAYNNNNRTG	1 cut(s)	71
SacII	CCGCGG	1 cut(s)	201
SapI	GCTCTTC	1 cut(s)	369
SatI	GCNGC	2 cut(s)	198, 246
Sau3AI	GATC	6 cut(s)	11, 154, 253, 298, 477, 486
Sau96I	GGNCC	2 cut(s)	7, 337
ScrFI	CCNGG	1 cut(s)	263
SduI	GDGCHC	2 cut(s)	119, 220
SetI	ASST	5 cut(s)	240, 250, 309, 357, 381
SfaNI	GCATC	1 cut(s)	38
Sfr274I	CTCGAG	1 cut(s)	302
Sfr303I	CCGCGG	1 cut(s)	201
SgrBI	CCGCGG	1 cut(s)	201
SinI	GGWCC	2 cut(s)	7, 337
SlaI	CTCGAG	1 cut(s)	302
SmiMI	CAYNNNNRTG	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	1 cut(s)	385
SsiI	CCGC	5 cut(s)	54, 112, 198, 200, 359
SspMI	CTAG	1 cut(s)	149
StyD4I	CCNGG	1 cut(s)	261
TaaI	ACNGT	1 cut(s)	332
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	9 cut(s)	14, 97, 135, 303, 342, 444, 459, 476, 480
TaqII	GACCGA	1 cut(s)	24
TasI	AATT	1 cut(s)	385
TatI	WGTACW	1 cut(s)	205
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	4 cut(s)	123, 132, 182, 282
TseFI	GTSAC	1 cut(s)	191
TseI	GCWGC	1 cut(s)	245
Tsp45I	GTSAC	1 cut(s)	191
TspDTI	ATGAA	2 cut(s)	387, 413
VpaK11BI	GGWCC	2 cut(s)	7, 337
XhoI	CTCGAG	1 cut(s)	302
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.