FvH4_6g39220

EamA-like transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0003698
Physical Location & Seq
Reverse (-)
31022559 .. 31025608
3050 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g39220.t8

Sequence Viewer

Length: 1098 bp
ATGCAAATAGTAATGCAGATGGAAGAGCAAGAAGAGAAAGCGGAAGGAGGCAGTAAGAGGGATAGACTAATCGACGAGTCGAAACCCTACATCCTGTGTATATTTTCTAATATATGCTTTGCAGGGTTCAATATTATCTCCAAAGTCGCACTAGACAAGGGCATGAGTCGTTATGTGCTTGTGGTTTATGGACATGCTTTTGCTACTCCAGCATCTGCTCTTTTTGCATTTCTCTTTGAGAGGAAAAATGAGAGCAAAATCAACGTTTCGATCTTGCGAAATGTCTTTTTCTTAGGCCTGCTAGAAGTGTTGGGAAGAACACTGTACTACATGGGATTGGAATACACTTCACCAACTTTTTCTTCTGCTTTGTCGAACATGATTCCATCTATTACCTTTATCTTAGCTGTTTTGTGCAGGATGGAACAGTTCGATATTTTCAAGCCTGGTACCCATGCCAAGATTGGGGGAACTCTTGTTGCCTTTGCTGGTGCAACACTCATGACCCTCTACAAAGGCATTGCTGTAATTACAACTCACACTAAAAGCTCCCATCAAACTGCAGCTACCTCAAAATCATCCACAGATGCAGACTGGATAAAGGGCTCCCTTGTCCTTATTGTTGCATATAGTTCATTAGCAGCATTCTATATCTTACAGACATCAACAATCAAAATGTATCCAGCACCAATCACTCTTACATCACTGACCTGCTTATCTGGGACACTGCTCTCAACAATCATGGCAGCAATTCCAGATCACAAAGCCTCTTCTTGGAAGTTATCATGGAACACAATTCTTGCTCCTATGTATAGCGGAATTGTGATTTTTGGAATCACTGTATATGTTCAGACCTTGGTAGTAAGTACAAAAGGCCCAGTTTTCATGACAGCTTTTAGACCACTGGGGACCATTTTTGTAGCTATAATGGGAGTATTCCTCTTAGGAGAAGCTACATACTTGGGAAGTGTTTTGGGATCTTTGTTGGTATTTCTTGGTTTGTATGCAACTCTTTGGGGAAAGAAAAAAGAGATGGAGAAGAAGTCAATTGATCATGGTATATCTCAGCAAGCTCATGAGCTCAATCTAGAAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

366

Amino Acids

40.03

Weight (kDa)

9.08

Isoelectric Point (pI)

31.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 29 - 168 7.3e-13 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 719
Acc65I GGTACC 1 cut(s) 449
AccB1I GGYRCC 1 cut(s) 449
AciI CCGC 2 cut(s) 41, 816
AclI AACGTT 1 cut(s) 264
AclWI GGATC 1 cut(s) 985
AfaI GTAC 3 cut(s) 326, 451, 868
AfiI CCNNNNNNNGG 2 cut(s) 465, 774
AgsI TTSAA 2 cut(s) 130, 442
AjnI CCWGG 1 cut(s) 445
AjuI GAANNNNNNNTTGG 2 cut(s) 346, 378
AluBI AGCT 8 cut(s) 407, 549, 566, 893, 923, 953, 1073, 1081
AluI AGCT 8 cut(s) 407, 549, 566, 893, 923, 953, 1073, 1081
Alw21I GWGCWC 1 cut(s) 1083
AlwI GGATC 1 cut(s) 985
AlwNI CAGNNNCTG 1 cut(s) 215
AoxI GGCC 2 cut(s) 295, 874
ApeKI GCWGC 3 cut(s) 563, 641, 746
Asp718I GGTACC 1 cut(s) 449
AspS9I GGNCC 2 cut(s) 875, 909
AsuHPI GGTGA 1 cut(s) 342
AvaII GGWCC 1 cut(s) 909
BanI GGYRCC 1 cut(s) 449
BanII GRGCYC 2 cut(s) 608, 1083
Bbv12I GWGCWC 1 cut(s) 1083
BbvI GCAGC 3 cut(s) 575, 653, 758
BccI CCATC 5 cut(s) 13, 394, 415, 561, 1027
BciT130I CCWGG 1 cut(s) 447
BciVI GTATCC 1 cut(s) 690
BclI TGATCA 1 cut(s) 1051
BfaI CTAG 3 cut(s) 152, 302, 1088
BfmI CTRYAG 1 cut(s) 561
BfuAI ACCTGC 1 cut(s) 719
BfuI GTATCC 1 cut(s) 690
BisI GCNGC 3 cut(s) 564, 642, 747
BlsI GCNGC 3 cut(s) 565, 643, 748
Bme1390I CCNGG 1 cut(s) 447
Bme18I GGWCC 1 cut(s) 909
BmgT120I GGNCC 2 cut(s) 875, 909
BmiI GGNNCC 3 cut(s) 451, 607, 910
BmrFI CCNGG 1 cut(s) 447
BmrI ACTGGG 2 cut(s) 872, 914
BmsI GCATC 2 cut(s) 221, 577
BmuI ACTGGG 2 cut(s) 872, 914
BplI GAGNNNNNCTC 2 cut(s) 924, 956
BpmI CTGGAG 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 855
BsaXI ACNNNNNCTCC 2 cut(s) 1028, 1058
Bsc4I CCNNNNNNNGG 2 cut(s) 465, 774
Bse1I ACTGG 3 cut(s) 599, 878, 909
Bse3DI GCAATG 1 cut(s) 519
BseBI CCWGG 1 cut(s) 447
BseDI CCNNGG 1 cut(s) 855
BseGI GGATG 3 cut(s) 90, 426, 578
BseLI CCNNNNNNNGG 2 cut(s) 465, 774
BseMI GCAATG 1 cut(s) 519
BseMII CTCAG 1 cut(s) 1079
BseNI ACTGG 3 cut(s) 599, 878, 909
BseXI GCAGC 3 cut(s) 575, 653, 758
BsgI GTGCAG 1 cut(s) 436
BshFI GGCC 2 cut(s) 297, 876
BshNI GGYRCC 1 cut(s) 449
BsiHKAI GWGCWC 1 cut(s) 1083
BslFI GGGAC 2 cut(s) 736, 922
BslI CCNNNNNNNGG 2 cut(s) 465, 774
BsmFI GGGAC 2 cut(s) 736, 922
BsmI GAATGC 1 cut(s) 644
BsnI GGCC 2 cut(s) 297, 876
Bsp1286I GDGCHC 2 cut(s) 608, 1083
Bsp143I GATC 4 cut(s) 270, 757, 977, 1051
BspACI CCGC 2 cut(s) 41, 816
BspANI GGCC 2 cut(s) 297, 876
BspCNI CTCAG 1 cut(s) 1078
BspHI TCATGA 3 cut(s) 501, 885, 1075
BspLI GGNNCC 3 cut(s) 451, 607, 910
BspMAI CTGCAG 1 cut(s) 565
BspMI ACCTGC 1 cut(s) 719
BspPI GGATC 1 cut(s) 985
BspQI GCTCTTC 1 cut(s) 18
BspT107I GGYRCC 1 cut(s) 449
BsrDI GCAATG 1 cut(s) 519
BsrI ACTGG 3 cut(s) 599, 878, 909
BssECI CCNNGG 1 cut(s) 855
BssMI GATC 4 cut(s) 270, 757, 977, 1051
BssT1I CCWWGG 1 cut(s) 855
Bst2UI CCWGG 1 cut(s) 447
Bst4CI ACNGT 3 cut(s) 324, 429, 841
Bst6I CTCTTC 3 cut(s) 18, 27, 775
BstC8I GCNNGC 2 cut(s) 299, 1071
BstDEI CTNAG 4 cut(s) 292, 403, 943, 1065
BstF5I GGATG 3 cut(s) 90, 426, 578
BstKTI GATC 4 cut(s) 273, 760, 980, 1054
BstMBI GATC 4 cut(s) 270, 757, 977, 1051
BstMWI GCNNNNNNNGC 2 cut(s) 209, 224
BstNI CCWGG 1 cut(s) 447
BstNSI RCATGY 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 445
BstSFI CTRYAG 1 cut(s) 561
BstV1I GCAGC 3 cut(s) 575, 653, 758
BstX2I RGATCY 1 cut(s) 977
BstYI RGATCY 1 cut(s) 977
BsuI GTATCC 1 cut(s) 690
BsuRI GGCC 2 cut(s) 297, 876
BtsCI GGATG 3 cut(s) 90, 426, 578
BtsI GCAGTG 1 cut(s) 725
BtsIMutI CAGTG 5 cut(s) 320, 704, 725, 837, 902
BveI ACCTGC 1 cut(s) 719
Cac8I GCNNGC 2 cut(s) 299, 1071
CaiI CAGNNNCTG 1 cut(s) 215
CciI TCATGA 3 cut(s) 501, 885, 1075
Cfr13I GGNCC 2 cut(s) 875, 909
Csp6I GTAC 3 cut(s) 325, 450, 867
CviQI GTAC 3 cut(s) 325, 450, 867
DdeI CTNAG 4 cut(s) 292, 403, 943, 1065
DpnI GATC 4 cut(s) 272, 759, 979, 1053
DpnII GATC 4 cut(s) 270, 757, 977, 1051
Eam1104I CTCTTC 3 cut(s) 18, 27, 775
EarI CTCTTC 3 cut(s) 18, 27, 775
Ecl136II GAGCTC 1 cut(s) 1081
Eco130I CCWWGG 1 cut(s) 855
Eco147I AGGCCT 1 cut(s) 297
Eco24I GRGCYC 2 cut(s) 608, 1083
Eco47I GGWCC 1 cut(s) 909
Eco53kI GAGCTC 1 cut(s) 1081
EcoICRI GAGCTC 1 cut(s) 1081
EcoRII CCWGG 1 cut(s) 445
EcoT14I CCWWGG 1 cut(s) 855
EcoT38I GRGCYC 2 cut(s) 608, 1083
ErhI CCWWGG 1 cut(s) 855
FaqI GGGAC 2 cut(s) 736, 922
FbaI TGATCA 1 cut(s) 1051
Fnu4HI GCNGC 3 cut(s) 564, 642, 747
FokI GGATG 3 cut(s) 77, 433, 565
FriOI GRGCYC 2 cut(s) 608, 1083
Fsp4HI GCNGC 3 cut(s) 564, 642, 747
FspBI CTAG 3 cut(s) 152, 302, 1088
GluI GCNGC 3 cut(s) 564, 642, 747
GsuI CTGGAG 1 cut(s) 192
HaeIII GGCC 2 cut(s) 297, 876
HinfI GANTC 4 cut(s) 77, 166, 382, 834
HphI GGTGA 1 cut(s) 342
Hpy188I TCNGA 1 cut(s) 852
Hpy188III TCNNGA 5 cut(s) 502, 755, 886, 1076, 1088
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 1 cut(s) 38
HpyCH4III ACNGT 3 cut(s) 324, 429, 841
HpyCH4IV ACGT 1 cut(s) 264
HpyF10VI GCNNNNNNNGC 2 cut(s) 209, 224
HpyF3I CTNAG 4 cut(s) 292, 403, 943, 1065
HpySE526I ACGT 1 cut(s) 264
KpnI GGTACC 1 cut(s) 453
Ksp22I TGATCA 1 cut(s) 1051
Kzo9I GATC 4 cut(s) 270, 757, 977, 1051
LguI GCTCTTC 1 cut(s) 18
LmnI GCTCC 3 cut(s) 554, 611, 808
Lsp1109I GCAGC 3 cut(s) 575, 653, 758
LweI GCATC 2 cut(s) 221, 577
MaeI CTAG 3 cut(s) 152, 302, 1088
MaeII ACGT 1 cut(s) 264
MalI GATC 4 cut(s) 272, 759, 979, 1053
MboI GATC 4 cut(s) 270, 757, 977, 1051
MboII GAAGA 6 cut(s) 35, 44, 327, 354, 762, 1051
MfeI CAATTG 1 cut(s) 1047
MflI RGATCY 1 cut(s) 977
MhlI GDGCHC 2 cut(s) 608, 1083
MluCI AATT 5 cut(s) 528, 750, 795, 819, 1047
MlyI GAGTC 2 cut(s) 86, 175
MnlI CCTC 7 cut(s) 41, 51, 234, 518, 580, 778, 950
MspR9I CCNGG 1 cut(s) 447
MunI CAATTG 1 cut(s) 1047
Mva1269I GAATGC 1 cut(s) 644
MvaI CCWGG 1 cut(s) 447
MwoI GCNNNNNNNGC 2 cut(s) 209, 224
NdeII GATC 4 cut(s) 270, 757, 977, 1051
NlaIV GGNNCC 3 cut(s) 451, 607, 910
NspI RCATGY 1 cut(s) 197
PagI TCATGA 3 cut(s) 501, 885, 1075
PceI AGGCCT 1 cut(s) 297
PciSI GCTCTTC 1 cut(s) 18
PctI GAATGC 1 cut(s) 644
PfeI GAWTC 2 cut(s) 382, 834
PkrI GCNGC 3 cut(s) 565, 643, 748
PleI GAGTC 2 cut(s) 85, 174
PpsI GAGTC 2 cut(s) 85, 174
Psp124BI GAGCTC 1 cut(s) 1083
Psp1406I AACGTT 1 cut(s) 264
Psp6I CCWGG 1 cut(s) 445
PspGI CCWGG 1 cut(s) 445
PspN4I GGNNCC 3 cut(s) 451, 607, 910
PspPI GGNCC 2 cut(s) 875, 909
PstI CTGCAG 1 cut(s) 565
PstNI CAGNNNCTG 1 cut(s) 215
PsuI RGATCY 1 cut(s) 977
RsaI GTAC 3 cut(s) 326, 451, 868
RsaNI GTAC 3 cut(s) 325, 450, 867
SacI GAGCTC 1 cut(s) 1083
SapI GCTCTTC 1 cut(s) 18
SatI GCNGC 3 cut(s) 564, 642, 747
Sau3AI GATC 4 cut(s) 270, 757, 977, 1051
Sau96I GGNCC 2 cut(s) 875, 909
SchI GAGTC 2 cut(s) 86, 175
ScrFI CCNGG 1 cut(s) 447
SduI GDGCHC 2 cut(s) 608, 1083
SfaNI GCATC 2 cut(s) 221, 577
SfcI CTRYAG 1 cut(s) 561
SinI GGWCC 1 cut(s) 909
Sse9I AATT 5 cut(s) 528, 750, 795, 819, 1047
SseBI AGGCCT 1 cut(s) 297
SsiI CCGC 2 cut(s) 41, 816
SspI AATATT 1 cut(s) 133
SspMI CTAG 3 cut(s) 152, 302, 1088
SstI GAGCTC 1 cut(s) 1083
StuI AGGCCT 1 cut(s) 297
StyD4I CCNGG 1 cut(s) 445
StyI CCWWGG 1 cut(s) 855
TaaI ACNGT 3 cut(s) 324, 429, 841
TaiI ACGT 1 cut(s) 267
TaqI TCGA 5 cut(s) 72, 80, 269, 374, 432
TasI AATT 5 cut(s) 528, 750, 795, 819, 1047
TatI WGTACW 2 cut(s) 324, 866
TfiI GAWTC 2 cut(s) 382, 834
TscAI CASTG 5 cut(s) 327, 711, 732, 844, 909
TseI GCWGC 3 cut(s) 563, 641, 746
TspDTI ATGAA 2 cut(s) 624, 874
TspRI CASTG 5 cut(s) 327, 711, 732, 844, 909
VpaK11BI GGWCC 1 cut(s) 909
XbaI TCTAGA 1 cut(s) 1087
XceI RCATGY 1 cut(s) 197
XcmI CCANNNNNNNNNTGG 1 cut(s) 461
XspI CTAG 3 cut(s) 152, 302, 1088
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.