Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003698

Physical Location & Seq

Genomic Coordinates Forward (+)

36089786 .. 36091660

Gene Structure 1875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG309300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGCAAAAAGTAAAGCAGATGGAAGAGCAAGAAGAGAGAGTGAAGGGAAGCAGTAAGAGGGATAGACTAATCGAAGAGTCGAAACCCTACATCCTCTGTATATTTTCTAATGCATGCTTTTCAGGGTACAATATTGTCTCCAAAGTCGCTCTAGACAAGGGCATGAGCCGTTATGTGCTTGTGGTTTATGGACATGCTTTTGGAACTCTAGCAACTGCTCTTTTTGCATTTCTCTTTGAGAGGAAAAATGAGAGCAAAATCAATATTCGGATCTTGCAAAATGTCTTTTTCTTAGGTCTGCTGGGTGGAGTGTTAGGAAGAACACTATACTACATGGGATTGGAATACACCTCACCAGCTTTTGCATCTGCCATGGGCAACATGATTCCATCGATTACCTTCATCTTAGCTGTTTTGTGCAGGATGGAACAGTTCGATATTTCGAAGCTTCGTACCCAAGCCAAGATTGGGGGAACTCTTGCTGCCTTTGCTGGTGCGACACTCATGACCCTCTATAAGGGTGTTGCTGTAATTACAACGCACACCAAAAGCTCCCATCAAACTGCAGCTACCTCAAAATCATCTACAGACGCAGAATGGATAAAGGGCTCCCTTGTCCTTATTGTTTCATTTAGTTCCTTAGCAGCATTCTATATCTTACAGACATCAACAATTAAAATGTATCCAGCACCAATCACTCTTACATCATTGACCTGCTTATCTGGGACACTGCTCTCAACAATCATGGCAGCAATTCTAGATCACAAAGCATCTTCTTGGAAGTTATCATGGAACACACTTCTTGCTCCTATGTATAGTGGAATTGTGATTTTCGGAATCACAGTTTATGTTCAGACCTTAGTAGTACGAACAAAAGGCCCAGTTTTCATGACAGCTTTTAGACCACTAGCTACCATTGTTGTAGCTATAATGGGACTACTCATTTTAGGAGAAGCAATATACTTGGGAAGTGTTTTGGGAGCTTTCTTGATAGTTCTTGGTCTGTACGCAACTCTTTGGGGAAAGAAAAAAGAGAAGGAGAAGAAGTCAATGGATCATGGTGTATCTCAGCAAGCTATTGAGATCAATCTAGAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

366

Amino Acids

40.11

Weight (kDa)

9.57

Isoelectric Point (pI)

37.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	29 - 169	6.1e-15	EamA-like transporter family
EamA	PF00892	202 - 339	3.1e-07	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003698)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g39211 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220
malus_domestica	MD09G1144300.v1.1
prunus_persica	Prupe.3G183600_v2.0.a1 Prupe.3G183600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0122881 RchiOBHm_Chr2g0153031 RchiOBHm_Chr2g0153061
rosa_laevigata	RLG00000020670 RLG00000020672 RLG00000020673
rosa_multiflora	Rmu_sc0000859.1_g000002 Rmu_sc0003830.1_g000003
rosa_roxburghii	Rroxscaffold_2G00095240 Rroxscaffold_2G00095260 Rroxscaffold_2G00121070
rosa_rugosa	Rorug02G0437000
rosa_samantha	Rh2AG499000 Rh2AG499200 Rh2BG309300 Rh2BG510400 Rh2BG510500 Rh2CG485400 Rh2CG485600 Rh2DG521900 Rh2DG522100
rosa_wichuraiana	Rw2G040950 Rw2G040970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	722
AclWI	GGATC	2 cut(s)	278, 1062
AfaI	GTAC	4 cut(s)	128, 454, 867, 1007
AfiI	CCNNNNNNNGG	2 cut(s)	468, 517
Alw26I	GTCTC	1 cut(s)	142
AlwI	GGATC	2 cut(s)	278, 1062
AoxI	GGCC	1 cut(s)	877
ApeKI	GCWGC	4 cut(s)	482, 566, 644, 749
AspS9I	GGNCC	1 cut(s)	878
AsuHPI	GGTGA	1 cut(s)	345
AsuII	TTCGAA	1 cut(s)	443
BanII	GRGCYC	1 cut(s)	611
BbvI	GCAGC	4 cut(s)	469, 578, 656, 761
BccI	CCATC	4 cut(s)	13, 397, 418, 564
BceAI	ACGGC	1 cut(s)	153
BciVI	GTATCC	1 cut(s)	693
BcoDI	GTCTC	1 cut(s)	142
BfaI	CTAG	5 cut(s)	152, 209, 758, 908, 1091
BfmI	CTRYAG	2 cut(s)	564, 585
BfuAI	ACCTGC	1 cut(s)	722
BfuI	GTATCC	1 cut(s)	693
BisI	GCNGC	4 cut(s)	483, 567, 645, 750
BlsI	GCNGC	4 cut(s)	484, 568, 646, 751
BmgT120I	GGNCC	1 cut(s)	878
BmiI	GGNNCC	1 cut(s)	610
BmrI	ACTGGG	1 cut(s)	875
BmsI	GCATC	2 cut(s)	374, 779
BmuI	ACTGGG	1 cut(s)	875
Bpu10I	CCTNAGC	1 cut(s)	640
Bpu14I	TTCGAA	1 cut(s)	443
Bsa29I	ATCGAT	1 cut(s)	392
BsaJI	CCNNGG	1 cut(s)	372
BsaXI	ACNNNNNCTCC	2 cut(s)	1031, 1061
Bsc4I	CCNNNNNNNGG	2 cut(s)	468, 517
Bse1I	ACTGG	1 cut(s)	881
BseCI	ATCGAT	1 cut(s)	392
BseDI	CCNNGG	1 cut(s)	372
BseGI	GGATG	2 cut(s)	90, 429
BseLI	CCNNNNNNNGG	2 cut(s)	468, 517
BseMII	CTCAG	1 cut(s)	1082
BseNI	ACTGG	1 cut(s)	881
BseXI	GCAGC	4 cut(s)	469, 578, 656, 761
BseYI	CCCAGC	1 cut(s)	301
BsgI	GTGCAG	1 cut(s)	439
BshFI	GGCC	1 cut(s)	879
BshVI	ATCGAT	1 cut(s)	392
BslFI	GGGAC	2 cut(s)	739, 948
BslI	CCNNNNNNNGG	2 cut(s)	468, 517
BsmAI	GTCTC	1 cut(s)	142
BsmFI	GGGAC	2 cut(s)	739, 948
BsmI	GAATGC	1 cut(s)	647
BsnI	GGCC	1 cut(s)	879
Bsp119I	TTCGAA	1 cut(s)	443
Bsp1286I	GDGCHC	1 cut(s)	611
Bsp143I	GATC	4 cut(s)	270, 760, 1054, 1083
Bsp19I	CCATGG	1 cut(s)	372
BspANI	GGCC	1 cut(s)	879
BspCNI	CTCAG	1 cut(s)	1081
BspDI	ATCGAT	1 cut(s)	392
BspHI	TCATGA	2 cut(s)	504, 888
BspLI	GGNNCC	1 cut(s)	610
BspMAI	CTGCAG	1 cut(s)	568
BspMI	ACCTGC	1 cut(s)	722
BspPI	GGATC	2 cut(s)	278, 1062
BspQI	GCTCTTC	1 cut(s)	18
BspT104I	TTCGAA	1 cut(s)	443
BsrI	ACTGG	1 cut(s)	881
BssECI	CCNNGG	1 cut(s)	372
BssMI	GATC	4 cut(s)	270, 760, 1054, 1083
BssT1I	CCWWGG	1 cut(s)	372
Bst4CI	ACNGT	2 cut(s)	432, 844
Bst6I	CTCTTC	3 cut(s)	18, 27, 69
BstBI	TTCGAA	1 cut(s)	443
BstC8I	GCNNGC	2 cut(s)	115, 1074
BstDEI	CTNAG	5 cut(s)	292, 406, 640, 859, 1068
BstDSI	CCRYGG	1 cut(s)	372
BstENI	CCTNNNNNAGG	1 cut(s)	515
BstF5I	GGATG	2 cut(s)	90, 429
BstKTI	GATC	4 cut(s)	273, 763, 1057, 1086
BstMAI	GTCTC	1 cut(s)	142
BstMBI	GATC	4 cut(s)	270, 760, 1054, 1083
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 488
BstNSI	RCATGY	2 cut(s)	117, 197
BstSFI	CTRYAG	2 cut(s)	564, 585
BstV1I	GCAGC	4 cut(s)	469, 578, 656, 761
BstX2I	RGATCY	1 cut(s)	270
BstYI	RGATCY	1 cut(s)	270
Bsu15I	ATCGAT	1 cut(s)	392
BsuI	GTATCC	1 cut(s)	693
BsuRI	GGCC	1 cut(s)	879
BsuTUI	ATCGAT	1 cut(s)	392
BtgI	CCRYGG	1 cut(s)	372
BtsCI	GGATG	2 cut(s)	90, 429
BtsI	GCAGTG	1 cut(s)	728
BtsIMutI	CAGTG	1 cut(s)	728
BveI	ACCTGC	1 cut(s)	722
Cac8I	GCNNGC	2 cut(s)	115, 1074
CciI	TCATGA	2 cut(s)	504, 888
Cfr13I	GGNCC	1 cut(s)	878
ClaI	ATCGAT	1 cut(s)	392
CseI	GACGC	1 cut(s)	599
Csp6I	GTAC	4 cut(s)	127, 453, 866, 1006
CviQI	GTAC	4 cut(s)	127, 453, 866, 1006
DdeI	CTNAG	5 cut(s)	292, 406, 640, 859, 1068
DpnI	GATC	4 cut(s)	272, 762, 1056, 1085
DpnII	GATC	4 cut(s)	270, 760, 1054, 1083
Eam1104I	CTCTTC	3 cut(s)	18, 27, 69
EarI	CTCTTC	3 cut(s)	18, 27, 69
Eco130I	CCWWGG	1 cut(s)	372
Eco24I	GRGCYC	1 cut(s)	611
EcoNI	CCTNNNNNAGG	1 cut(s)	515
EcoT14I	CCWWGG	1 cut(s)	372
EcoT22I	ATGCAT	1 cut(s)	115
EcoT38I	GRGCYC	1 cut(s)	611
ErhI	CCWWGG	1 cut(s)	372
FaqI	GGGAC	2 cut(s)	739, 948
Fnu4HI	GCNGC	4 cut(s)	483, 567, 645, 750
FokI	GGATG	2 cut(s)	77, 436
FriOI	GRGCYC	1 cut(s)	611
Fsp4HI	GCNGC	4 cut(s)	483, 567, 645, 750
FspBI	CTAG	5 cut(s)	152, 209, 758, 908, 1091
GluI	GCNGC	4 cut(s)	483, 567, 645, 750
GsaI	CCCAGC	1 cut(s)	305
HaeIII	GGCC	1 cut(s)	879
HgaI	GACGC	1 cut(s)	599
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	3 cut(s)	77, 385, 837
HphI	GGTGA	1 cut(s)	345
Hpy188I	TCNGA	3 cut(s)	270, 836, 855
Hpy188III	TCNNGA	6 cut(s)	152, 505, 758, 889, 988, 1091
HpyAV	CCTTC	3 cut(s)	37, 409, 1030
HpyCH4III	ACNGT	2 cut(s)	432, 844
HpyCH4V	TGCA	7 cut(s)	4, 113, 227, 277, 365, 420, 566
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 488
HpyF3I	CTNAG	5 cut(s)	292, 406, 640, 859, 1068
Kzo9I	GATC	4 cut(s)	270, 760, 1054, 1083
LguI	GCTCTTC	1 cut(s)	18
LmnI	GCTCC	4 cut(s)	557, 614, 811, 980
LpnPI	CCDG	9 cut(s)	108, 287, 369, 406, 477, 699, 708, 727, 894
Lsp1109I	GCAGC	4 cut(s)	469, 578, 656, 761
LweI	GCATC	2 cut(s)	374, 779
MaeI	CTAG	5 cut(s)	152, 209, 758, 908, 1091
MalI	GATC	4 cut(s)	272, 762, 1056, 1085
MboI	GATC	4 cut(s)	270, 760, 1054, 1083
MboII	GAAGA	6 cut(s)	35, 44, 86, 330, 765, 1054
MflI	RGATCY	1 cut(s)	270
MhlI	GDGCHC	1 cut(s)	611
MluCI	AATT	4 cut(s)	531, 672, 753, 822
MlyI	GAGTC	1 cut(s)	86
MnlI	CCTC	6 cut(s)	51, 104, 234, 361, 521, 583
Mph1103I	ATGCAT	1 cut(s)	115
MseI	TTAA	1 cut(s)	675
Mva1269I	GAATGC	1 cut(s)	647
MwoI	GCNNNNNNNGC	2 cut(s)	224, 488
NcoI	CCATGG	1 cut(s)	372
NdeII	GATC	4 cut(s)	270, 760, 1054, 1083
NlaIV	GGNNCC	1 cut(s)	610
NsiI	ATGCAT	1 cut(s)	115
NspI	RCATGY	2 cut(s)	117, 197
NspV	TTCGAA	1 cut(s)	443
PaeI	GCATGC	1 cut(s)	117
PagI	TCATGA	2 cut(s)	504, 888
PciSI	GCTCTTC	1 cut(s)	18
PctI	GAATGC	1 cut(s)	647
PfeI	GAWTC	2 cut(s)	385, 837
PkrI	GCNGC	4 cut(s)	484, 568, 646, 751
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
PspFI	CCCAGC	1 cut(s)	301
PspN4I	GGNNCC	1 cut(s)	610
PspPI	GGNCC	1 cut(s)	878
PstI	CTGCAG	1 cut(s)	568
PsuI	RGATCY	1 cut(s)	270
RsaI	GTAC	4 cut(s)	128, 454, 867, 1007
RsaNI	GTAC	4 cut(s)	127, 453, 866, 1006
SapI	GCTCTTC	1 cut(s)	18
SaqAI	TTAA	1 cut(s)	675
SatI	GCNGC	4 cut(s)	483, 567, 645, 750
Sau3AI	GATC	4 cut(s)	270, 760, 1054, 1083
Sau96I	GGNCC	1 cut(s)	878
SchI	GAGTC	1 cut(s)	86
SduI	GDGCHC	1 cut(s)	611
SfaNI	GCATC	2 cut(s)	374, 779
SfcI	CTRYAG	2 cut(s)	564, 585
SfuI	TTCGAA	1 cut(s)	443
SphI	GCATGC	1 cut(s)	117
Sse9I	AATT	4 cut(s)	531, 672, 753, 822
SspI	AATATT	2 cut(s)	133, 265
SspMI	CTAG	5 cut(s)	152, 209, 758, 908, 1091
StyI	CCWWGG	1 cut(s)	372
TaaI	ACNGT	2 cut(s)	432, 844
TaqI	TCGA	5 cut(s)	72, 80, 392, 435, 443
TasI	AATT	4 cut(s)	531, 672, 753, 822
TfiI	GAWTC	2 cut(s)	385, 837
Tru1I	TTAA	1 cut(s)	675
Tru9I	TTAA	1 cut(s)	675
TscAI	CASTG	1 cut(s)	735
TseI	GCWGC	4 cut(s)	482, 566, 644, 749
TspDTI	ATGAA	3 cut(s)	391, 618, 877
TspRI	CASTG	1 cut(s)	735
XagI	CCTNNNNNAGG	1 cut(s)	515
XbaI	TCTAGA	3 cut(s)	151, 757, 1090
XceI	RCATGY	2 cut(s)	117, 197
XcmI	CCANNNNNNNNNTGG	1 cut(s)	464
XspI	CTAG	5 cut(s)	152, 209, 758, 908, 1091
Zsp2I	ATGCAT	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.