Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003698

Physical Location & Seq

Genomic Coordinates Reverse (-)

71787016 .. 71815003

Gene Structure 27988 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG510500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1473 bp

ATGATGTGTTCAGGATGGAACAGTTTGATATTTCCAAGCCTGCTGGCACCCAAGCCAAGATTGGGGGAACTCTTGCTGCCTAGCTTTGCTGGTGCAACAATGGAAGAGCAAGAAGAGAGAGTTAAAGGAAGCCGTAAGTGGGATAGAGTAATCGAAGAATCGAAACCCTACATCCTCTGTATATTTTGTAATGTATGCTTTGCCGGGTACAATATTGTCTCCAAAGTCGCTCTACACAAAGGCATGAGCAGATATGTGCTTGTGGTTTATGGATATGCGTTTGGAACTCTAGCAACTGCTCTTTTTGCATTTCTCTTTGAGAGGAAAAATGAGAGCAAAATCAATGTTCAGATCTTGCGAAATGTCTTTTTCTTAGGTCTGCTGGGAGGAGCGTTAGGAAGTACACTGTACTACATGGGATTGGAATATACTTCACCAGCTTTTACATCTGCCATGGCCAACATGACTCCATCGATTACCTTCATCTTAGCTGTTTTGTGCAGGATGGAACAGTTTGATATTTCCAAGCCTGGTACCCAAGCCAAGATTGGAGGAACTCTTGCTGCCTTTGCTGGTGCAACACTCATGACCCTCTACAAGGGCGTTGCTGTAATAACAATGCACACCAAAAGCTCCCATCAAACTGCAGGTACCTCAAAATCATCTACAGACGCAGAATGGTTGAAGGGCTCCCTTGTCCTTATTGTTTCATATAGTTCATTTGCAGCATCCTATATCTTACAGACATCAACAATAAAAATGTATCCAGCACCAATCACTCTTACATCATTGACCTGCTTATCTGGGACACTGCTCTCAACAATCATGGCAGGAATTCTAGATCACAAAGCATCTTCTTGGAAGTTATCATGGAACACACTTCTTGCTCCTATGTATTGTGGAACTGTGATTTATGGAATCACATTTTATGTTCAGACCTTAGTAGTAATAACAAAAGGCCCAGTTTTCACGACAGCTTTTAGACCACTAGCTACCATTGTTGTTGGTATAATGGGACTACTCATTTTAGGAGAAGCTATATACTTGGGAAGTGTTTTGGGAGCTTTCTTGATAGTTCTTGGTCTGTATGCAACTCTTTGGGGAAAGAAAAAAGAGAAGGAGAAGAAGTCAATGGATCATGGTATATCTCAGCAAGCTATTGACATCAATTTAGAAAAGATAGCAGAAGATCTTGAGACATCAAATGGTAAAACTTGTTATACGAAGTCAAGAAAAAGAAAAGGAATGAAGGATGATGAAGATCCTTCCGAACTTCCATCTATTCCAGAGGAACCCCCTTATGAATGGAGAGGAGACAATCCTGAGACATCAAATGAAAAATATTATATAACGTATTCAAGGAAAAGAAGAAGAATATTGAAGGACGACGAAGGTGCTCTAAATGTTTTGCTGATTTTAGAAAAGCCTGTCAAGGAAAGGGTCATCAGGGTATCTCGTATCACCTTGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

490

Amino Acids

54.16

Weight (kDa)

9.16

Isoelectric Point (pI)

38.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	57 - 196	4.4e-15	EamA-like transporter family
EamA	PF00892	229 - 366	2.3e-06	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003698)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g39211 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220
malus_domestica	MD09G1144300.v1.1
prunus_persica	Prupe.3G183600_v2.0.a1 Prupe.3G183600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0122881 RchiOBHm_Chr2g0153031 RchiOBHm_Chr2g0153061
rosa_laevigata	RLG00000020670 RLG00000020672 RLG00000020673
rosa_multiflora	Rmu_sc0000859.1_g000002 Rmu_sc0003830.1_g000003
rosa_roxburghii	Rroxscaffold_2G00095240 Rroxscaffold_2G00095260 Rroxscaffold_2G00121070
rosa_rugosa	Rorug02G0437000
rosa_samantha	Rh2AG499000 Rh2AG499200 Rh2BG309300 Rh2BG510400 Rh2BG510500 Rh2CG485400 Rh2CG485600 Rh2DG521900 Rh2DG522100
rosa_wichuraiana	Rw2G040950 Rw2G040970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	638, 803
Acc65I	GGTACC	2 cut(s)	533, 650
AccB1I	GGYRCC	3 cut(s)	46, 533, 650
AclWI	GGATC	2 cut(s)	1143, 1256
AcoI	YGGCCR	1 cut(s)	456
AcsI	RAATTY	1 cut(s)	834
AfaI	GTAC	5 cut(s)	209, 403, 410, 535, 652
AfiI	CCNNNNNNNGG	3 cut(s)	62, 139, 598
AgsI	TTSAA	3 cut(s)	685, 1359, 1381
AjnI	CCWGG	1 cut(s)	529
AluBI	AGCT	9 cut(s)	84, 440, 491, 633, 977, 992, 1037, 1064, 1157
AluI	AGCT	9 cut(s)	84, 440, 491, 633, 977, 992, 1037, 1064, 1157
Alw21I	GWGCWC	1 cut(s)	1399
Alw26I	GTCTC	4 cut(s)	223, 1190, 1308, 1319
AlwI	GGATC	2 cut(s)	1143, 1256
AoxI	GGCC	2 cut(s)	456, 958
ApeKI	GCWGC	3 cut(s)	76, 563, 725
ApoI	RAATTY	1 cut(s)	834
Asp718I	GGTACC	2 cut(s)	533, 650
AspS9I	GGNCC	1 cut(s)	959
AsuC2I	CCSGG	1 cut(s)	205
AsuHPI	GGTGA	2 cut(s)	426, 1453
BalI	TGGCCA	1 cut(s)	458
BanI	GGYRCC	3 cut(s)	46, 533, 650
BanII	GRGCYC	1 cut(s)	692
Bbv12I	GWGCWC	1 cut(s)	1399
BbvI	GCAGC	3 cut(s)	63, 550, 737
BccI	CCATC	5 cut(s)	9, 478, 499, 645, 1285
BceAI	ACGGC	1 cut(s)	117
BcgI	CGANNNNNNTGC	2 cut(s)	1376, 1410
BciT130I	CCWGG	1 cut(s)	531
BciVI	GTATCC	1 cut(s)	774
BcnI	CCSGG	1 cut(s)	205
BcoDI	GTCTC	4 cut(s)	223, 1190, 1308, 1319
BfaI	CTAG	4 cut(s)	81, 290, 839, 989
BfmI	CTRYAG	2 cut(s)	645, 666
BfuAI	ACCTGC	2 cut(s)	638, 803
BfuI	GTATCC	1 cut(s)	774
BglII	AGATCT	2 cut(s)	351, 1189
BisI	GCNGC	3 cut(s)	77, 564, 726
BlsI	GCNGC	3 cut(s)	78, 565, 727
Bme1390I	CCNGG	2 cut(s)	205, 531
BmgT120I	GGNCC	1 cut(s)	959
BmiI	GGNNCC	5 cut(s)	48, 535, 652, 691, 1293
BmrFI	CCNGG	2 cut(s)	205, 531
BmrI	ACTGGG	1 cut(s)	956
BmsI	GCATC	2 cut(s)	737, 860
BmuI	ACTGGG	1 cut(s)	956
BpuEI	CTTGAG	1 cut(s)	1214
BpuMI	CCSGG	1 cut(s)	205
Bsa29I	ATCGAT	1 cut(s)	473
BsaBI	GATNNNNATC	1 cut(s)	1260
BsaJI	CCNNGG	1 cut(s)	453
BsaXI	ACNNNNNCTCC	2 cut(s)	1112, 1142
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 139, 598
Bse1I	ACTGG	1 cut(s)	962
Bse8I	GATNNNNATC	1 cut(s)	1260
BseBI	CCWGG	1 cut(s)	531
BseCI	ATCGAT	1 cut(s)	473
BseDI	CCNNGG	1 cut(s)	453
BseGI	GGATG	5 cut(s)	20, 171, 510, 728, 1258
BseJI	GATNNNNATC	1 cut(s)	1260
BseLI	CCNNNNNNNGG	3 cut(s)	62, 139, 598
BseMII	CTCAG	2 cut(s)	1163, 1314
BseNI	ACTGG	1 cut(s)	962
BseRI	GAGGAG	2 cut(s)	402, 1326
BseXI	GCAGC	3 cut(s)	63, 550, 737
BseYI	CCCAGC	1 cut(s)	382
BsgI	GTGCAG	1 cut(s)	520
BshFI	GGCC	2 cut(s)	458, 960
BshNI	GGYRCC	3 cut(s)	46, 533, 650
BshVI	ATCGAT	1 cut(s)	473
BsiHKAI	GWGCWC	1 cut(s)	1399
BsiSI	CCGG	1 cut(s)	204
BslFI	GGGAC	2 cut(s)	820, 1029
BslI	CCNNNNNNNGG	3 cut(s)	62, 139, 598
BsmAI	GTCTC	4 cut(s)	223, 1190, 1308, 1319
BsmFI	GGGAC	2 cut(s)	820, 1029
BsnI	GGCC	2 cut(s)	458, 960
Bsp1286I	GDGCHC	2 cut(s)	692, 1399
Bsp143I	GATC	5 cut(s)	351, 841, 1135, 1189, 1261
Bsp19I	CCATGG	1 cut(s)	453
BspANI	GGCC	2 cut(s)	458, 960
BspCNI	CTCAG	2 cut(s)	1162, 1315
BspDI	ATCGAT	1 cut(s)	473
BspHI	TCATGA	1 cut(s)	585
BspLI	GGNNCC	5 cut(s)	48, 535, 652, 691, 1293
BspMAI	CTGCAG	1 cut(s)	649
BspMI	ACCTGC	2 cut(s)	638, 803
BspPI	GGATC	2 cut(s)	1143, 1256
BspQI	GCTCTTC	1 cut(s)	99
BspT107I	GGYRCC	3 cut(s)	46, 533, 650
BsrI	ACTGG	1 cut(s)	962
BssECI	CCNNGG	1 cut(s)	453
BssMI	GATC	5 cut(s)	351, 841, 1135, 1189, 1261
BssT1I	CCWWGG	1 cut(s)	453
Bst2UI	CCWGG	1 cut(s)	531
Bst4CI	ACNGT	4 cut(s)	23, 408, 513, 907
Bst6I	CTCTTC	2 cut(s)	99, 108
BstC8I	GCNNGC	3 cut(s)	41, 45, 1155
BstDEI	CTNAG	5 cut(s)	373, 487, 940, 1149, 1323
BstDSI	CCRYGG	1 cut(s)	453
BstENI	CCTNNNNNAGG	1 cut(s)	596
BstF5I	GGATG	5 cut(s)	20, 171, 510, 728, 1258
BstKTI	GATC	5 cut(s)	354, 844, 1138, 1192, 1264
BstMAI	GTCTC	4 cut(s)	223, 1190, 1308, 1319
BstMBI	GATC	5 cut(s)	351, 841, 1135, 1189, 1261
BstMWI	GCNNNNNNNGC	2 cut(s)	305, 569
BstNI	CCWGG	1 cut(s)	531
BstSCI	CCNGG	2 cut(s)	203, 529
BstSFI	CTRYAG	2 cut(s)	645, 666
BstV1I	GCAGC	3 cut(s)	63, 550, 737
BstX2I	RGATCY	3 cut(s)	351, 1189, 1261
BstYI	RGATCY	3 cut(s)	351, 1189, 1261
Bsu15I	ATCGAT	1 cut(s)	473
BsuI	GTATCC	1 cut(s)	774
BsuRI	GGCC	2 cut(s)	458, 960
BsuTUI	ATCGAT	1 cut(s)	473
BtgI	CCRYGG	1 cut(s)	453
BtsCI	GGATG	5 cut(s)	20, 171, 510, 728, 1258
BtsI	GCAGTG	1 cut(s)	809
BtsIMutI	CAGTG	2 cut(s)	404, 809
BveI	ACCTGC	2 cut(s)	638, 803
Cac8I	GCNNGC	3 cut(s)	41, 45, 1155
CciI	TCATGA	1 cut(s)	585
Cfr13I	GGNCC	1 cut(s)	959
ClaI	ATCGAT	1 cut(s)	473
CseI	GACGC	1 cut(s)	680
Csp6I	GTAC	5 cut(s)	208, 402, 409, 534, 651
CviAII	CATG	8 cut(s)	244, 415, 454, 463, 586, 826, 870, 1139
CviQI	GTAC	5 cut(s)	208, 402, 409, 534, 651
DdeI	CTNAG	5 cut(s)	373, 487, 940, 1149, 1323
DpnI	GATC	5 cut(s)	353, 843, 1137, 1191, 1263
DpnII	GATC	5 cut(s)	351, 841, 1135, 1189, 1261
EaeI	YGGCCR	1 cut(s)	456
Eam1104I	CTCTTC	2 cut(s)	99, 108
EarI	CTCTTC	2 cut(s)	99, 108
Eco130I	CCWWGG	1 cut(s)	453
Eco24I	GRGCYC	1 cut(s)	692
EcoNI	CCTNNNNNAGG	1 cut(s)	596
EcoRI	GAATTC	1 cut(s)	834
EcoRII	CCWGG	1 cut(s)	529
EcoT14I	CCWWGG	1 cut(s)	453
EcoT38I	GRGCYC	1 cut(s)	692
ErhI	CCWWGG	1 cut(s)	453
FaeI	CATG	8 cut(s)	247, 418, 457, 466, 589, 829, 873, 1142
FaqI	GGGAC	2 cut(s)	820, 1029
FatI	CATG	8 cut(s)	243, 414, 453, 462, 585, 825, 869, 1138
Fnu4HI	GCNGC	3 cut(s)	77, 564, 726
FokI	GGATG	5 cut(s)	27, 158, 517, 715, 1265
FriOI	GRGCYC	1 cut(s)	692
Fsp4HI	GCNGC	3 cut(s)	77, 564, 726
FspBI	CTAG	4 cut(s)	81, 290, 839, 989
GluI	GCNGC	3 cut(s)	77, 564, 726
GsaI	CCCAGC	1 cut(s)	386
HaeIII	GGCC	2 cut(s)	458, 960
HapII	CCGG	1 cut(s)	204
HgaI	GACGC	1 cut(s)	680
Hin1II	CATG	8 cut(s)	247, 418, 457, 466, 589, 829, 873, 1142
HinfI	GANTC	3 cut(s)	158, 466, 918
HpaII	CCGG	1 cut(s)	204
HphI	GGTGA	2 cut(s)	426, 1453
Hpy166II	GTNNAC	1 cut(s)	404
Hpy188I	TCNGA	3 cut(s)	351, 936, 1270
Hpy188III	TCNNGA	9 cut(s)	12, 586, 839, 970, 1069, 1193, 1230, 1286, 1322
Hpy8I	GTNNAC	1 cut(s)	404
Hpy99I	CGWCG	1 cut(s)	1391
HpyAV	CCTTC	7 cut(s)	490, 679, 1111, 1243, 1275, 1375, 1385
HpyCH4III	ACNGT	4 cut(s)	23, 408, 513, 907
HpyCH4IV	ACGT	1 cut(s)	1352
HpyCH4V	TGCA	8 cut(s)	95, 308, 501, 578, 622, 647, 725, 1091
HpyF10VI	GCNNNNNNNGC	2 cut(s)	305, 569
HpyF3I	CTNAG	5 cut(s)	373, 487, 940, 1149, 1323
HpySE526I	ACGT	1 cut(s)	1352
Hsp92II	CATG	8 cut(s)	247, 418, 457, 466, 589, 829, 873, 1142
KpnI	GGTACC	2 cut(s)	537, 654
Kzo9I	GATC	5 cut(s)	351, 841, 1135, 1189, 1261
LguI	GCTCTTC	1 cut(s)	99
LmnI	GCTCC	5 cut(s)	389, 638, 695, 892, 1061
Lsp1109I	GCAGC	3 cut(s)	63, 550, 737
LweI	GCATC	2 cut(s)	737, 860
MaeI	CTAG	4 cut(s)	81, 290, 839, 989
MaeII	ACGT	1 cut(s)	1352
MalI	GATC	5 cut(s)	353, 843, 1137, 1191, 1263
MboI	GATC	5 cut(s)	351, 841, 1135, 1189, 1261
MboII	GAAGA	9 cut(s)	116, 125, 167, 846, 1135, 1199, 1271, 1380, 1383
MflI	RGATCY	3 cut(s)	351, 1189, 1261
MhlI	GDGCHC	2 cut(s)	692, 1399
MlsI	TGGCCA	1 cut(s)	458
MluCI	AATT	2 cut(s)	834, 1168
MluNI	TGGCCA	1 cut(s)	458
MlyI	GAGTC	1 cut(s)	460
MnlI	CCTC	8 cut(s)	185, 315, 380, 545, 602, 664, 1282, 1304
Mox20I	TGGCCA	1 cut(s)	458
MscI	TGGCCA	1 cut(s)	458
MseI	TTAA	1 cut(s)	123
Msp20I	TGGCCA	1 cut(s)	458
MspI	CCGG	1 cut(s)	204
MspR9I	CCNGG	2 cut(s)	205, 531
MvaI	CCWGG	1 cut(s)	531
MwoI	GCNNNNNNNGC	2 cut(s)	305, 569
NciI	CCSGG	1 cut(s)	205
NcoI	CCATGG	1 cut(s)	453
NdeII	GATC	5 cut(s)	351, 841, 1135, 1189, 1261
NlaIII	CATG	8 cut(s)	247, 418, 457, 466, 589, 829, 873, 1142
NlaIV	GGNNCC	5 cut(s)	48, 535, 652, 691, 1293
PagI	TCATGA	1 cut(s)	585
PciSI	GCTCTTC	1 cut(s)	99
PfeI	GAWTC	2 cut(s)	158, 918
PkrI	GCNGC	3 cut(s)	78, 565, 727
PleI	GAGTC	1 cut(s)	460
PpsI	GAGTC	1 cut(s)	460
Psp6I	CCWGG	1 cut(s)	529
PspFI	CCCAGC	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	529
PspN4I	GGNNCC	5 cut(s)	48, 535, 652, 691, 1293
PspPI	GGNCC	1 cut(s)	959
PstI	CTGCAG	1 cut(s)	649
PsuI	RGATCY	3 cut(s)	351, 1189, 1261
RsaI	GTAC	5 cut(s)	209, 403, 410, 535, 652
RsaNI	GTAC	5 cut(s)	208, 402, 409, 534, 651
SapI	GCTCTTC	1 cut(s)	99
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	3 cut(s)	77, 564, 726
Sau3AI	GATC	5 cut(s)	351, 841, 1135, 1189, 1261
Sau96I	GGNCC	1 cut(s)	959
SchI	GAGTC	1 cut(s)	460
ScrFI	CCNGG	2 cut(s)	205, 531
SduI	GDGCHC	2 cut(s)	692, 1399
SfaNI	GCATC	2 cut(s)	737, 860
SfcI	CTRYAG	2 cut(s)	645, 666
SmlI	CTYRAG	1 cut(s)	1193
SmoI	CTYRAG	1 cut(s)	1193
Sse9I	AATT	2 cut(s)	834, 1168
SspI	AATATT	3 cut(s)	214, 1343, 1377
SspMI	CTAG	4 cut(s)	81, 290, 839, 989
StyD4I	CCNGG	2 cut(s)	203, 529
StyI	CCWWGG	1 cut(s)	453
TaaI	ACNGT	4 cut(s)	23, 408, 513, 907
TaiI	ACGT	1 cut(s)	1355
TaqI	TCGA	3 cut(s)	153, 161, 473
TasI	AATT	2 cut(s)	834, 1168
TatI	WGTACW	2 cut(s)	401, 408
TfiI	GAWTC	2 cut(s)	158, 918
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	2 cut(s)	411, 816
TseI	GCWGC	3 cut(s)	76, 563, 725
TspDTI	ATGAA	7 cut(s)	472, 699, 708, 1262, 1272, 1317, 1350
TspRI	CASTG	2 cut(s)	411, 816
XagI	CCTNNNNNAGG	1 cut(s)	596
XapI	RAATTY	1 cut(s)	834
XbaI	TCTAGA	1 cut(s)	838
XcmI	CCANNNNNNNNNTGG	2 cut(s)	58, 545
XspI	CTAG	4 cut(s)	81, 290, 839, 989

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.