Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003698

Physical Location & Seq

Genomic Coordinates Reverse (-)

74655852 .. 74656584

Gene Structure 733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG521900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGGATTGGAATACACTTCACCAGCTTTTGCATCTGCCATGTCCAACATGATTCCATCGATTACCTTCATCTTAGCTGTTTTGTGCAGGATGGAACAGTTTGATATTTCCAAGCCTGGTACCCAAGCCAAGATTGGAGGAACTCTTGCTGCCTTTGCTGGTGCAACACCCATGACCCTCTACAAGGGCGTTGCTGTAATTACAATGCACACCAAAAGCTCCTATCAAACTGCAGGTACCTCAAAATCATCTACACACGCAGAATGGATCAAGGGCTCCCTTGTCCTTCTTGTTTCATATAGTTCAGTTGCAGCATCCTATATCTTACAGACATCAACAATTAAAATGTATCCAGCACCAATCACTCTTACATCATTGACCTGCTTATCTGGGACACTGCTCTCAACAATCATGGCAGCAATTCTAGATCACAAAGCATCTTCTTGGAAGTTATCATGGAACACACTTCTTGCTCCTATGTATAGTGTAAGAACTCAATCACACGTCTTCAACTGTCTATGGCCTATGATGTTTGTTTATGAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

182

Amino Acids

19.73

Weight (kDa)

9.3

Isoelectric Point (pI)

37.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003698)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g39211 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220
malus_domestica	MD09G1144300.v1.1
prunus_persica	Prupe.3G183600_v2.0.a1 Prupe.3G183600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0122881 RchiOBHm_Chr2g0153031 RchiOBHm_Chr2g0153061
rosa_laevigata	RLG00000020670 RLG00000020672 RLG00000020673
rosa_multiflora	Rmu_sc0000859.1_g000002 Rmu_sc0003830.1_g000003
rosa_roxburghii	Rroxscaffold_2G00095240 Rroxscaffold_2G00095260 Rroxscaffold_2G00121070
rosa_rugosa	Rorug02G0437000
rosa_samantha	Rh2AG499000 Rh2AG499200 Rh2BG309300 Rh2BG510400 Rh2BG510500 Rh2CG485400 Rh2CG485600 Rh2DG521900 Rh2DG522100
rosa_wichuraiana	Rw2G040950 Rw2G040970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	224, 389
Acc65I	GGTACC	2 cut(s)	119, 236
AccB1I	GGYRCC	2 cut(s)	119, 236
AclWI	GGATC	1 cut(s)	275
AfaI	GTAC	2 cut(s)	121, 238
AfiI	CCNNNNNNNGG	1 cut(s)	184
AflIII	ACRYGT	1 cut(s)	502
AgsI	TTSAA	1 cut(s)	511
AjiI	CACGTC	1 cut(s)	505
AjnI	CCWGG	1 cut(s)	115
AluBI	AGCT	3 cut(s)	26, 77, 219
AluI	AGCT	3 cut(s)	26, 77, 219
AlwI	GGATC	1 cut(s)	275
AoxI	GGCC	1 cut(s)	521
ApeKI	GCWGC	3 cut(s)	149, 311, 416
Asp718I	GGTACC	2 cut(s)	119, 236
AsuHPI	GGTGA	1 cut(s)	12
BanI	GGYRCC	2 cut(s)	119, 236
BanII	GRGCYC	1 cut(s)	278
BbsI	GAAGAC	1 cut(s)	499
BbvI	GCAGC	3 cut(s)	136, 323, 428
BccI	CCATC	2 cut(s)	64, 85
BciT130I	CCWGG	1 cut(s)	117
BciVI	GTATCC	1 cut(s)	360
BfaI	CTAG	1 cut(s)	425
BfmI	CTRYAG	1 cut(s)	231
BfuAI	ACCTGC	2 cut(s)	224, 389
BfuI	GTATCC	1 cut(s)	360
BisI	GCNGC	3 cut(s)	150, 312, 417
BlsI	GCNGC	3 cut(s)	151, 313, 418
Bme1390I	CCNGG	1 cut(s)	117
BmgBI	CACGTC	1 cut(s)	505
BmiI	GGNNCC	3 cut(s)	121, 238, 277
BmrFI	CCNGG	1 cut(s)	117
BmsI	GCATC	3 cut(s)	41, 323, 446
BpiI	GAAGAC	1 cut(s)	499
Bsa29I	ATCGAT	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
BseBI	CCWGG	1 cut(s)	117
BseCI	ATCGAT	1 cut(s)	59
BseGI	GGATG	2 cut(s)	96, 314
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseXI	GCAGC	3 cut(s)	136, 323, 428
BsgI	GTGCAG	1 cut(s)	106
BshFI	GGCC	1 cut(s)	523
BshNI	GGYRCC	2 cut(s)	119, 236
BshVI	ATCGAT	1 cut(s)	59
BslFI	GGGAC	1 cut(s)	406
BslI	CCNNNNNNNGG	1 cut(s)	184
BsmFI	GGGAC	1 cut(s)	406
BsnI	GGCC	1 cut(s)	523
Bsp1286I	GDGCHC	1 cut(s)	278
Bsp143I	GATC	2 cut(s)	267, 427
BspANI	GGCC	1 cut(s)	523
BspDI	ATCGAT	1 cut(s)	59
BspLI	GGNNCC	3 cut(s)	121, 238, 277
BspMAI	CTGCAG	1 cut(s)	235
BspMI	ACCTGC	2 cut(s)	224, 389
BspPI	GGATC	1 cut(s)	275
BspT107I	GGYRCC	2 cut(s)	119, 236
BssMI	GATC	2 cut(s)	267, 427
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	2 cut(s)	99, 515
BstDEI	CTNAG	1 cut(s)	73
BstENI	CCTNNNNNAGG	1 cut(s)	182
BstF5I	GGATG	2 cut(s)	96, 314
BstKTI	GATC	2 cut(s)	270, 430
BstMBI	GATC	2 cut(s)	267, 427
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstNI	CCWGG	1 cut(s)	117
BstSCI	CCNGG	1 cut(s)	115
BstSFI	CTRYAG	1 cut(s)	231
BstV1I	GCAGC	3 cut(s)	136, 323, 428
BstV2I	GAAGAC	1 cut(s)	499
Bsu15I	ATCGAT	1 cut(s)	59
BsuI	GTATCC	1 cut(s)	360
BsuRI	GGCC	1 cut(s)	523
BsuTUI	ATCGAT	1 cut(s)	59
BtrI	CACGTC	1 cut(s)	505
BtsCI	GGATG	2 cut(s)	96, 314
BtsI	GCAGTG	1 cut(s)	395
BtsIMutI	CAGTG	1 cut(s)	395
BveI	ACCTGC	2 cut(s)	224, 389
ClaI	ATCGAT	1 cut(s)	59
Csp6I	GTAC	2 cut(s)	120, 237
CviAII	CATG	5 cut(s)	40, 49, 172, 412, 456
CviJI	RGCY	7 cut(s)	26, 77, 115, 128, 219, 276, 523
CviKI_1	RGCY	7 cut(s)	26, 77, 115, 128, 219, 276, 523
CviQI	GTAC	2 cut(s)	120, 237
DdeI	CTNAG	1 cut(s)	73
DpnI	GATC	2 cut(s)	269, 429
DpnII	GATC	2 cut(s)	267, 427
Eco24I	GRGCYC	1 cut(s)	278
EcoNI	CCTNNNNNAGG	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	115
EcoT38I	GRGCYC	1 cut(s)	278
FaeI	CATG	5 cut(s)	43, 52, 175, 415, 459
FaqI	GGGAC	1 cut(s)	406
FatI	CATG	5 cut(s)	39, 48, 171, 411, 455
Fnu4HI	GCNGC	3 cut(s)	150, 312, 417
FokI	GGATG	2 cut(s)	103, 301
FriOI	GRGCYC	1 cut(s)	278
Fsp4HI	GCNGC	3 cut(s)	150, 312, 417
FspBI	CTAG	1 cut(s)	425
GluI	GCNGC	3 cut(s)	150, 312, 417
HaeIII	GGCC	1 cut(s)	523
Hin1II	CATG	5 cut(s)	43, 52, 175, 415, 459
HinfI	GANTC	1 cut(s)	52
HphI	GGTGA	1 cut(s)	12
Hpy188III	TCNNGA	1 cut(s)	425
HpyAV	CCTTC	2 cut(s)	76, 296
HpyCH4III	ACNGT	2 cut(s)	99, 515
HpyCH4IV	ACGT	1 cut(s)	504
HpyCH4V	TGCA	6 cut(s)	32, 87, 164, 208, 233, 311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	1 cut(s)	73
HpySE526I	ACGT	1 cut(s)	504
Hsp92II	CATG	5 cut(s)	43, 52, 175, 415, 459
KpnI	GGTACC	2 cut(s)	123, 240
Kzo9I	GATC	2 cut(s)	267, 427
LmnI	GCTCC	3 cut(s)	224, 281, 478
LpnPI	CCDG	9 cut(s)	36, 73, 102, 129, 144, 219, 366, 375, 394
Lsp1109I	GCAGC	3 cut(s)	136, 323, 428
LweI	GCATC	3 cut(s)	41, 323, 446
MaeI	CTAG	1 cut(s)	425
MaeII	ACGT	1 cut(s)	504
MalI	GATC	2 cut(s)	269, 429
MboI	GATC	2 cut(s)	267, 427
MboII	GAAGA	2 cut(s)	432, 499
MhlI	GDGCHC	1 cut(s)	278
MluCI	AATT	3 cut(s)	198, 339, 420
MmeI	TCCRAC	1 cut(s)	69
MnlI	CCTC	3 cut(s)	131, 188, 250
MseI	TTAA	1 cut(s)	342
MspR9I	CCNGG	1 cut(s)	117
MvaI	CCWGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	1 cut(s)	155
NdeII	GATC	2 cut(s)	267, 427
NlaIII	CATG	5 cut(s)	43, 52, 175, 415, 459
NlaIV	GGNNCC	3 cut(s)	121, 238, 277
PfeI	GAWTC	1 cut(s)	52
PkrI	GCNGC	3 cut(s)	151, 313, 418
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	3 cut(s)	121, 238, 277
PstI	CTGCAG	1 cut(s)	235
RsaI	GTAC	2 cut(s)	121, 238
RsaNI	GTAC	2 cut(s)	120, 237
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	3 cut(s)	150, 312, 417
Sau3AI	GATC	2 cut(s)	267, 427
ScrFI	CCNGG	1 cut(s)	117
SduI	GDGCHC	1 cut(s)	278
SetI	ASST	8 cut(s)	28, 68, 79, 221, 238, 242, 383, 507
SfaNI	GCATC	3 cut(s)	41, 323, 446
SfcI	CTRYAG	1 cut(s)	231
Sse9I	AATT	3 cut(s)	198, 339, 420
SspMI	CTAG	1 cut(s)	425
StyD4I	CCNGG	1 cut(s)	115
TaaI	ACNGT	2 cut(s)	99, 515
TaiI	ACGT	1 cut(s)	507
TaqI	TCGA	1 cut(s)	59
TasI	AATT	3 cut(s)	198, 339, 420
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	1 cut(s)	402
TseI	GCWGC	3 cut(s)	149, 311, 416
TspDTI	ATGAA	2 cut(s)	58, 285
TspRI	CASTG	1 cut(s)	402
XagI	CCTNNNNNAGG	1 cut(s)	182
XbaI	TCTAGA	1 cut(s)	424
XcmI	CCANNNNNNNNNTGG	1 cut(s)	131
XspI	CTAG	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.