Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003698

Physical Location & Seq

Genomic Coordinates Reverse (-)

74708508 .. 74726746

Gene Structure 18239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG522100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGAGCAGATATGTGCTTGTGGTTTATGGATATGCGTTTGGAACTCTAGCAACTGCTCTTTTTGCATTTCTCTTTGAGAGGAAAAATGAGAGCAAAATCAATGTTCAGATCTTGCGAAATGTCTTTTTCTTAGGTCTGCTGGGAGGAGCGTTAGGAAGTACACTGTACTACATGGGATTGGAATATACTTCACCAGCTTTTACATCTGCCATGGCCAACATGACTCCATCGATTACCTTCATCTTAGCTGTTTTGTGCAGGATGGAACAGTTTGATATTTCCAAGCCTGGTACCCAAGCCAAGATTGGAGGAACTCTTGCTGCCTTTGCTGGTGCAACACTCATGACCCTCTACAAGGGCGTTGCTGTAATAACAATGCACACCAAAAGCTCCCATCAAACTGCAGGTACCTCAAAATCATCTACAGACGCAGAATGGTTGAAGGGCTCCCTTGTCCTTATTGTTTCATATAGTTCATTTGCAGCATCCTATATCTTACAGACATCAACAATAAAAATGTATCCAGCACCAATCACTCTTACATCATTGACCTGCTTATCTGGGACACTGCTCTCAACAATCATGGCAGGAATTCTAGATCACAAAGCATCTTCTTGGAAGTTATCATGGAACACACTTCTTGCTCCTATGTATTGTGGAACTGTGATTTATGGAATCACATTTTATGTTCAGACCTTAGTAGTAATAACAAAAGGCCCAGTTTTCACGACAGCTTTTAGACCACTAGCTACCATTGTTGTTGGTATAATGGGACTACTCATTTTAGGAGAAGCTATATACTTGGGAAGTGTTTTGGGAGCTTTCTTGATAGTTCTTGGTCTGTATGCAACTCTTTGGGGAAAGAAAAAAGAGAAGGAGAAGAAGTCAATGGATCATGCAACTGCCCTTGTTGCAGTTCACTCTGAGGTTATCATCTTTGTTCTTCTTGTACCTCCTGGTCCCTATTCTCTAAGGATAGCAGAAGATCTTGAGACATCAAATGGTAAAACTTGTTATACGAAGTCAAGAAAAAGAAAAGGAATGAAGGATGATGAAGATCCTTCCGAACTTCCATCTATTCCAGAGGAACCCCCTTATGAATGGAGAGGAGACAATCCTGAGACATCAAATGAAAAATATTATATAACGTATTCAAGGAAAAGAAGAAGAATATTGAAGGACGACGAAGGTGCTCTAAATGTTTTGCTGATTTTAGAAAAGCCTGTCAAGGAAAGTAGAATTAATTATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

417

Amino Acids

45.86

Weight (kDa)

9.18

Isoelectric Point (pI)

37.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	3 - 115	2.5e-10	EamA-like transporter family
EamA	PF00892	148 - 285	1.7e-06	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003698)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g39211 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220
malus_domestica	MD09G1144300.v1.1
prunus_persica	Prupe.3G183600_v2.0.a1 Prupe.3G183600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0122881 RchiOBHm_Chr2g0153031 RchiOBHm_Chr2g0153061
rosa_laevigata	RLG00000020670 RLG00000020672 RLG00000020673
rosa_multiflora	Rmu_sc0000859.1_g000002 Rmu_sc0003830.1_g000003
rosa_roxburghii	Rroxscaffold_2G00095240 Rroxscaffold_2G00095260 Rroxscaffold_2G00121070
rosa_rugosa	Rorug02G0437000
rosa_samantha	Rh2AG499000 Rh2AG499200 Rh2BG309300 Rh2BG510400 Rh2BG510500 Rh2CG485400 Rh2CG485600 Rh2DG521900 Rh2DG522100
rosa_wichuraiana	Rw2G040950 Rw2G040970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1248
Acc36I	ACCTGC	2 cut(s)	395, 560
Acc65I	GGTACC	2 cut(s)	290, 407
AccB1I	GGYRCC	2 cut(s)	290, 407
AclWI	GGATC	2 cut(s)	900, 1052
AcoI	YGGCCR	1 cut(s)	213
AcsI	RAATTY	1 cut(s)	591
AfaI	GTAC	5 cut(s)	160, 167, 292, 409, 951
AfiI	CCNNNNNNNGG	1 cut(s)	355
AgsI	TTSAA	3 cut(s)	442, 1155, 1177
AjnI	CCWGG	2 cut(s)	286, 955
AluBI	AGCT	7 cut(s)	197, 248, 390, 734, 749, 794, 821
AluI	AGCT	7 cut(s)	197, 248, 390, 734, 749, 794, 821
Alw21I	GWGCWC	1 cut(s)	1195
Alw26I	GTCTC	3 cut(s)	986, 1104, 1115
AlwI	GGATC	2 cut(s)	900, 1052
AoxI	GGCC	2 cut(s)	213, 715
ApeKI	GCWGC	2 cut(s)	320, 482
ApoI	RAATTY	1 cut(s)	591
AseI	ATTAAT	1 cut(s)	1242
Asp718I	GGTACC	2 cut(s)	290, 407
AspS9I	GGNCC	2 cut(s)	716, 959
AsuHPI	GGTGA	1 cut(s)	183
AvaII	GGWCC	1 cut(s)	959
BalI	TGGCCA	1 cut(s)	215
BanI	GGYRCC	2 cut(s)	290, 407
BanII	GRGCYC	1 cut(s)	449
Bbv12I	GWGCWC	1 cut(s)	1195
BbvI	GCAGC	2 cut(s)	307, 494
BccI	CCATC	4 cut(s)	235, 256, 402, 1081
BcgI	CGANNNNNNTGC	2 cut(s)	1172, 1206
BciT130I	CCWGG	2 cut(s)	288, 957
BciVI	GTATCC	1 cut(s)	531
BcoDI	GTCTC	3 cut(s)	986, 1104, 1115
BfaI	CTAG	3 cut(s)	47, 596, 746
BfmI	CTRYAG	2 cut(s)	402, 423
BfuAI	ACCTGC	2 cut(s)	395, 560
BfuI	GTATCC	1 cut(s)	531
BglII	AGATCT	2 cut(s)	108, 985
BisI	GCNGC	2 cut(s)	321, 483
BlsI	GCNGC	2 cut(s)	322, 484
Bme1390I	CCNGG	2 cut(s)	288, 957
Bme18I	GGWCC	1 cut(s)	959
BmgT120I	GGNCC	2 cut(s)	716, 959
BmiI	GGNNCC	5 cut(s)	292, 409, 448, 961, 1089
BmrFI	CCNGG	2 cut(s)	288, 957
BmrI	ACTGGG	1 cut(s)	713
BmsI	GCATC	2 cut(s)	494, 617
BmuI	ACTGGG	1 cut(s)	713
BpuEI	CTTGAG	1 cut(s)	1010
Bsa29I	ATCGAT	1 cut(s)	230
BsaBI	GATNNNNATC	1 cut(s)	1056
BsaJI	CCNNGG	1 cut(s)	210
BsaXI	ACNNNNNCTCC	2 cut(s)	869, 899
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
Bse1I	ACTGG	1 cut(s)	719
Bse8I	GATNNNNATC	1 cut(s)	1056
BseBI	CCWGG	2 cut(s)	288, 957
BseCI	ATCGAT	1 cut(s)	230
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	3 cut(s)	267, 485, 1054
BseJI	GATNNNNATC	1 cut(s)	1056
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseMII	CTCAG	2 cut(s)	915, 1110
BseNI	ACTGG	1 cut(s)	719
BseRI	GAGGAG	2 cut(s)	159, 1122
BseXI	GCAGC	2 cut(s)	307, 494
BseYI	CCCAGC	1 cut(s)	139
BsgI	GTGCAG	1 cut(s)	277
BshFI	GGCC	2 cut(s)	215, 717
BshNI	GGYRCC	2 cut(s)	290, 407
BshVI	ATCGAT	1 cut(s)	230
BsiHKAI	GWGCWC	1 cut(s)	1195
BslFI	GGGAC	3 cut(s)	577, 786, 945
BslI	CCNNNNNNNGG	1 cut(s)	355
BsmAI	GTCTC	3 cut(s)	986, 1104, 1115
BsmFI	GGGAC	3 cut(s)	577, 786, 945
BsnI	GGCC	2 cut(s)	215, 717
Bsp1286I	GDGCHC	2 cut(s)	449, 1195
Bsp143I	GATC	5 cut(s)	108, 598, 892, 985, 1057
Bsp19I	CCATGG	1 cut(s)	210
BspANI	GGCC	2 cut(s)	215, 717
BspCNI	CTCAG	2 cut(s)	916, 1111
BspDI	ATCGAT	1 cut(s)	230
BspHI	TCATGA	1 cut(s)	342
BspLI	GGNNCC	5 cut(s)	292, 409, 448, 961, 1089
BspMAI	CTGCAG	1 cut(s)	406
BspMI	ACCTGC	2 cut(s)	395, 560
BspPI	GGATC	2 cut(s)	900, 1052
BspT107I	GGYRCC	2 cut(s)	290, 407
BsrI	ACTGG	1 cut(s)	719
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	5 cut(s)	108, 598, 892, 985, 1057
BssT1I	CCWWGG	1 cut(s)	210
Bst2UI	CCWGG	2 cut(s)	288, 957
Bst4CI	ACNGT	3 cut(s)	165, 270, 664
BstDEI	CTNAG	6 cut(s)	130, 244, 697, 924, 971, 1119
BstDSI	CCRYGG	1 cut(s)	210
BstENI	CCTNNNNNAGG	1 cut(s)	353
BstF5I	GGATG	3 cut(s)	267, 485, 1054
BstKTI	GATC	5 cut(s)	111, 601, 895, 988, 1060
BstMAI	GTCTC	3 cut(s)	986, 1104, 1115
BstMBI	GATC	5 cut(s)	108, 598, 892, 985, 1057
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 326, 911
BstNI	CCWGG	2 cut(s)	288, 957
BstSCI	CCNGG	2 cut(s)	286, 955
BstSFI	CTRYAG	2 cut(s)	402, 423
BstV1I	GCAGC	2 cut(s)	307, 494
BstX2I	RGATCY	3 cut(s)	108, 985, 1057
BstYI	RGATCY	3 cut(s)	108, 985, 1057
Bsu15I	ATCGAT	1 cut(s)	230
BsuI	GTATCC	1 cut(s)	531
BsuRI	GGCC	2 cut(s)	215, 717
BsuTUI	ATCGAT	1 cut(s)	230
BtgI	CCRYGG	1 cut(s)	210
BtsCI	GGATG	3 cut(s)	267, 485, 1054
BtsI	GCAGTG	1 cut(s)	566
BtsIMutI	CAGTG	2 cut(s)	161, 566
BveI	ACCTGC	2 cut(s)	395, 560
CciI	TCATGA	1 cut(s)	342
Cfr13I	GGNCC	2 cut(s)	716, 959
ClaI	ATCGAT	1 cut(s)	230
CseI	GACGC	1 cut(s)	437
Csp6I	GTAC	5 cut(s)	159, 166, 291, 408, 950
CviAII	CATG	7 cut(s)	172, 211, 220, 343, 583, 627, 896
CviQI	GTAC	5 cut(s)	159, 166, 291, 408, 950
DdeI	CTNAG	6 cut(s)	130, 244, 697, 924, 971, 1119
DpnI	GATC	5 cut(s)	110, 600, 894, 987, 1059
DpnII	GATC	5 cut(s)	108, 598, 892, 985, 1057
EaeI	YGGCCR	1 cut(s)	213
Eco130I	CCWWGG	1 cut(s)	210
Eco24I	GRGCYC	1 cut(s)	449
Eco47I	GGWCC	1 cut(s)	959
EcoNI	CCTNNNNNAGG	1 cut(s)	353
EcoRI	GAATTC	1 cut(s)	591
EcoRII	CCWGG	2 cut(s)	286, 955
EcoT14I	CCWWGG	1 cut(s)	210
EcoT38I	GRGCYC	1 cut(s)	449
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	7 cut(s)	175, 214, 223, 346, 586, 630, 899
FaqI	GGGAC	3 cut(s)	577, 786, 945
FatI	CATG	7 cut(s)	171, 210, 219, 342, 582, 626, 895
Fnu4HI	GCNGC	2 cut(s)	321, 483
FokI	GGATG	3 cut(s)	274, 472, 1061
FriOI	GRGCYC	1 cut(s)	449
Fsp4HI	GCNGC	2 cut(s)	321, 483
FspBI	CTAG	3 cut(s)	47, 596, 746
GluI	GCNGC	2 cut(s)	321, 483
GsaI	CCCAGC	1 cut(s)	143
HaeIII	GGCC	2 cut(s)	215, 717
HgaI	GACGC	1 cut(s)	437
Hin1II	CATG	7 cut(s)	175, 214, 223, 346, 586, 630, 899
HinfI	GANTC	2 cut(s)	223, 675
HphI	GGTGA	1 cut(s)	183
Hpy166II	GTNNAC	2 cut(s)	161, 919
Hpy188I	TCNGA	4 cut(s)	108, 693, 925, 1066
Hpy188III	TCNNGA	8 cut(s)	343, 596, 727, 826, 989, 1026, 1082, 1118
Hpy8I	GTNNAC	2 cut(s)	161, 919
Hpy99I	CGWCG	1 cut(s)	1187
HpyAV	CCTTC	7 cut(s)	247, 436, 868, 1039, 1071, 1171, 1181
HpyCH4III	ACNGT	3 cut(s)	165, 270, 664
HpyCH4IV	ACGT	1 cut(s)	1148
HpyCH4V	TGCA	9 cut(s)	65, 258, 335, 379, 404, 482, 848, 899, 914
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 326, 911
HpyF3I	CTNAG	6 cut(s)	130, 244, 697, 924, 971, 1119
HpySE526I	ACGT	1 cut(s)	1148
Hsp92II	CATG	7 cut(s)	175, 214, 223, 346, 586, 630, 899
KpnI	GGTACC	2 cut(s)	294, 411
Kzo9I	GATC	5 cut(s)	108, 598, 892, 985, 1057
LmnI	GCTCC	5 cut(s)	146, 395, 452, 649, 818
Lsp1109I	GCAGC	2 cut(s)	307, 494
LweI	GCATC	2 cut(s)	494, 617
MaeI	CTAG	3 cut(s)	47, 596, 746
MaeII	ACGT	1 cut(s)	1148
MalI	GATC	5 cut(s)	110, 600, 894, 987, 1059
MboI	GATC	5 cut(s)	108, 598, 892, 985, 1057
MboII	GAAGA	7 cut(s)	603, 892, 935, 995, 1067, 1176, 1179
MflI	RGATCY	3 cut(s)	108, 985, 1057
MhlI	GDGCHC	2 cut(s)	449, 1195
MlsI	TGGCCA	1 cut(s)	215
MluCI	AATT	4 cut(s)	591, 1239, 1243, 1249
MluNI	TGGCCA	1 cut(s)	215
MlyI	GAGTC	1 cut(s)	217
MnlI	CCTC	9 cut(s)	72, 137, 302, 359, 421, 919, 963, 1078, 1100
Mox20I	TGGCCA	1 cut(s)	215
MscI	TGGCCA	1 cut(s)	215
MseI	TTAA	2 cut(s)	1242, 1252
Msp20I	TGGCCA	1 cut(s)	215
MspR9I	CCNGG	2 cut(s)	288, 957
MvaI	CCWGG	2 cut(s)	288, 957
MwoI	GCNNNNNNNGC	3 cut(s)	62, 326, 911
NcoI	CCATGG	1 cut(s)	210
NdeII	GATC	5 cut(s)	108, 598, 892, 985, 1057
NlaIII	CATG	7 cut(s)	175, 214, 223, 346, 586, 630, 899
NlaIV	GGNNCC	5 cut(s)	292, 409, 448, 961, 1089
PagI	TCATGA	1 cut(s)	342
PfeI	GAWTC	1 cut(s)	675
PkrI	GCNGC	2 cut(s)	322, 484
PleI	GAGTC	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	217
PshBI	ATTAAT	1 cut(s)	1242
PsiI	TTATAA	1 cut(s)	1248
Psp6I	CCWGG	2 cut(s)	286, 955
PspFI	CCCAGC	1 cut(s)	139
PspGI	CCWGG	2 cut(s)	286, 955
PspN4I	GGNNCC	5 cut(s)	292, 409, 448, 961, 1089
PspPI	GGNCC	2 cut(s)	716, 959
PstI	CTGCAG	1 cut(s)	406
PsuI	RGATCY	3 cut(s)	108, 985, 1057
RsaI	GTAC	5 cut(s)	160, 167, 292, 409, 951
RsaNI	GTAC	5 cut(s)	159, 166, 291, 408, 950
SaqAI	TTAA	2 cut(s)	1242, 1252
SatI	GCNGC	2 cut(s)	321, 483
Sau3AI	GATC	5 cut(s)	108, 598, 892, 985, 1057
Sau96I	GGNCC	2 cut(s)	716, 959
SchI	GAGTC	1 cut(s)	217
ScrFI	CCNGG	2 cut(s)	288, 957
SduI	GDGCHC	2 cut(s)	449, 1195
SfaNI	GCATC	2 cut(s)	494, 617
SfcI	CTRYAG	2 cut(s)	402, 423
SinI	GGWCC	1 cut(s)	959
SmlI	CTYRAG	1 cut(s)	989
SmoI	CTYRAG	1 cut(s)	989
Sse9I	AATT	4 cut(s)	591, 1239, 1243, 1249
SspI	AATATT	2 cut(s)	1139, 1173
SspMI	CTAG	3 cut(s)	47, 596, 746
StyD4I	CCNGG	2 cut(s)	286, 955
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	3 cut(s)	165, 270, 664
TaiI	ACGT	1 cut(s)	1151
TaqI	TCGA	1 cut(s)	230
TasI	AATT	4 cut(s)	591, 1239, 1243, 1249
TatI	WGTACW	2 cut(s)	158, 165
TfiI	GAWTC	1 cut(s)	675
Tru1I	TTAA	2 cut(s)	1242, 1252
Tru9I	TTAA	2 cut(s)	1242, 1252
TscAI	CASTG	2 cut(s)	168, 573
TseI	GCWGC	2 cut(s)	320, 482
TspDTI	ATGAA	7 cut(s)	229, 456, 465, 1058, 1068, 1113, 1146
TspRI	CASTG	2 cut(s)	168, 573
VpaK11BI	GGWCC	1 cut(s)	959
VspI	ATTAAT	1 cut(s)	1242
XagI	CCTNNNNNAGG	1 cut(s)	353
XapI	RAATTY	1 cut(s)	591
XbaI	TCTAGA	1 cut(s)	595
XcmI	CCANNNNNNNNNTGG	1 cut(s)	302
XspI	CTAG	3 cut(s)	47, 596, 746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.