Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003698

Physical Location & Seq

Genomic Coordinates Forward (+)

16634600 .. 16636964

Gene Structure 2365 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00095240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGCAAAATGTAATGCAGATGGAAGAGCAAGAAGAGAGAGTAAAAGGAAGCCGTAAGAGGCATAGAGTAATCGAAGAATCGAAACCCTACATCCTCTGTATATTTTGTAATGTATGCTTTGCCGGGTACAATATTGTCTCCAAAGTCGCTCTACACAAAGGCATGAGCCGATATGTGCTTGTGGTTTATGGATATGCATTTGGAACTCTAGCAACTGCTCTTTTTGCATTTCTTTTTGAGAGGAAAAATGAGAGCAAAATCAATGTTCAGATCTTGCGAAATGTCTTTTTCTTAGGTCTGCTGGGAGGAGCGTTAGGAAGTACACTGTACTACATGGGATTGGAATACACTTCACCAGCTTTTACATCTGCCATGGCCAACATGACTCCATCGATTACCTTCATCTTAGCTGTTTTGTGCAGGATGGAACAGTTTGATATTTCCAAGCCTGGTACCCAAGCCAAGATTGGAGGAACTCTTGCTGCCTTTGCTGGTGCAGCACTCATGACCCTCTACAAGGGCGTTGCTGTAATTACAACGCACACCAAAAGTTCCCATCAAACTGCAGGTACCTCAAAATCATCTACGGACGCAGAATGGTTGAAGGGCTCCCTTGTCCTTATTGTTTCATATAGTTCATTTGCAGCATCCTATATCTTACAGACATCAACAATTAAAATGTATCCAGCACCAATCACTCTTACATCGTTGACCTGCTTATCTGGGACACTGCTCTCAACAATCATGGCAGCAATTCTAGATCACAAAGCATCTTCTTGGAAGTTATCATGGAACACACTTCTTGCTCCTATGTATTGTGGAATTGTGATTTATGGAATCACATTTTATGTTCAGACTTTAGTAGTAATAACAAAAGGCCCAGTTTTCACAACAGCTTTTAGACCACTAGCTACCATTGTTGTAGCTATAATGGGACTACTCATTTTAGGAGAAGCTATATACTTGGGAAGTGTTTTGGGAGCTTTCTTGATAGTTCTTGGTCTGTATGCAACTCTTTGGGGAAAGAAAAAAGAGAAGGAGAAGAAGTCAATGGATCATAGTATATCTCAGCAGCAATCTATTGACATCAATTTAGAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

367

Amino Acids

40.18

Weight (kDa)

9.37

Isoelectric Point (pI)

36.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	30 - 169	2e-15	EamA-like transporter family
EamA	PF00892	202 - 339	5.7e-08	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003698)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g39211 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220
malus_domestica	MD09G1144300.v1.1
prunus_persica	Prupe.3G183600_v2.0.a1 Prupe.3G183600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0122881 RchiOBHm_Chr2g0153031 RchiOBHm_Chr2g0153061
rosa_laevigata	RLG00000020670 RLG00000020672 RLG00000020673
rosa_multiflora	Rmu_sc0000859.1_g000002 Rmu_sc0003830.1_g000003
rosa_roxburghii	Rroxscaffold_2G00095240 Rroxscaffold_2G00095260 Rroxscaffold_2G00121070
rosa_rugosa	Rorug02G0437000
rosa_samantha	Rh2AG499000 Rh2AG499200 Rh2BG309300 Rh2BG510400 Rh2BG510500 Rh2CG485400 Rh2CG485600 Rh2DG521900 Rh2DG522100
rosa_wichuraiana	Rw2G040950 Rw2G040970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	557, 722
Acc65I	GGTACC	2 cut(s)	452, 569
AccB1I	GGYRCC	2 cut(s)	452, 569
AclWI	GGATC	1 cut(s)	1062
AcoI	YGGCCR	1 cut(s)	375
AfaI	GTAC	5 cut(s)	128, 322, 329, 454, 571
AfiI	CCNNNNNNNGG	1 cut(s)	517
AgsI	TTSAA	1 cut(s)	604
AjnI	CCWGG	1 cut(s)	448
AluBI	AGCT	7 cut(s)	359, 410, 896, 911, 926, 956, 983
AluI	AGCT	7 cut(s)	359, 410, 896, 911, 926, 956, 983
Alw26I	GTCTC	1 cut(s)	142
AlwI	GGATC	1 cut(s)	1062
AoxI	GGCC	2 cut(s)	375, 877
ApeKI	GCWGC	5 cut(s)	482, 497, 644, 749, 1072
Asp718I	GGTACC	2 cut(s)	452, 569
AspS9I	GGNCC	1 cut(s)	878
AsuC2I	CCSGG	1 cut(s)	124
AsuHPI	GGTGA	1 cut(s)	345
BalI	TGGCCA	1 cut(s)	377
BanI	GGYRCC	2 cut(s)	452, 569
BanII	GRGCYC	1 cut(s)	611
BbvI	GCAGC	5 cut(s)	469, 509, 656, 761, 1084
BccI	CCATC	4 cut(s)	13, 397, 418, 564
BceAI	ACGGC	1 cut(s)	36
BciT130I	CCWGG	1 cut(s)	450
BciVI	GTATCC	1 cut(s)	693
BcnI	CCSGG	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	142
BfaI	CTAG	3 cut(s)	209, 758, 908
BfmI	CTRYAG	1 cut(s)	564
BfuAI	ACCTGC	2 cut(s)	557, 722
BfuI	GTATCC	1 cut(s)	693
BglII	AGATCT	1 cut(s)	270
BisI	GCNGC	5 cut(s)	483, 498, 645, 750, 1073
BlsI	GCNGC	5 cut(s)	484, 499, 646, 751, 1074
Bme1390I	CCNGG	2 cut(s)	124, 450
BmgT120I	GGNCC	1 cut(s)	878
BmiI	GGNNCC	3 cut(s)	454, 571, 610
BmrFI	CCNGG	2 cut(s)	124, 450
BmrI	ACTGGG	1 cut(s)	875
BmsI	GCATC	2 cut(s)	656, 779
BmuI	ACTGGG	1 cut(s)	875
BpuMI	CCSGG	1 cut(s)	124
Bsa29I	ATCGAT	1 cut(s)	392
BsaJI	CCNNGG	1 cut(s)	372
BsaXI	ACNNNNNCTCC	2 cut(s)	1031, 1061
Bsc4I	CCNNNNNNNGG	1 cut(s)	517
Bse1I	ACTGG	1 cut(s)	881
BseBI	CCWGG	1 cut(s)	450
BseCI	ATCGAT	1 cut(s)	392
BseDI	CCNNGG	1 cut(s)	372
BseGI	GGATG	3 cut(s)	90, 429, 647
BseLI	CCNNNNNNNGG	1 cut(s)	517
BseMII	CTCAG	1 cut(s)	1082
BseNI	ACTGG	1 cut(s)	881
BseRI	GAGGAG	1 cut(s)	321
BseXI	GCAGC	5 cut(s)	469, 509, 656, 761, 1084
BseYI	CCCAGC	1 cut(s)	301
BsgI	GTGCAG	2 cut(s)	439, 516
BshFI	GGCC	2 cut(s)	377, 879
BshNI	GGYRCC	2 cut(s)	452, 569
BshVI	ATCGAT	1 cut(s)	392
BsiSI	CCGG	1 cut(s)	123
BslFI	GGGAC	2 cut(s)	739, 948
BslI	CCNNNNNNNGG	1 cut(s)	517
BsmAI	GTCTC	1 cut(s)	142
BsmFI	GGGAC	2 cut(s)	739, 948
BsnI	GGCC	2 cut(s)	377, 879
Bsp1286I	GDGCHC	1 cut(s)	611
Bsp143I	GATC	3 cut(s)	270, 760, 1054
Bsp19I	CCATGG	1 cut(s)	372
BspANI	GGCC	2 cut(s)	377, 879
BspCNI	CTCAG	1 cut(s)	1081
BspDI	ATCGAT	1 cut(s)	392
BspHI	TCATGA	1 cut(s)	504
BspLI	GGNNCC	3 cut(s)	454, 571, 610
BspMAI	CTGCAG	1 cut(s)	568
BspMI	ACCTGC	2 cut(s)	557, 722
BspPI	GGATC	1 cut(s)	1062
BspQI	GCTCTTC	1 cut(s)	18
BspT107I	GGYRCC	2 cut(s)	452, 569
BsrI	ACTGG	1 cut(s)	881
BssECI	CCNNGG	1 cut(s)	372
BssMI	GATC	3 cut(s)	270, 760, 1054
BssT1I	CCWWGG	1 cut(s)	372
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	2 cut(s)	327, 432
Bst6I	CTCTTC	2 cut(s)	18, 27
BstDEI	CTNAG	3 cut(s)	292, 406, 1068
BstDSI	CCRYGG	1 cut(s)	372
BstENI	CCTNNNNNAGG	1 cut(s)	515
BstF5I	GGATG	3 cut(s)	90, 429, 647
BstKTI	GATC	3 cut(s)	273, 763, 1057
BstMAI	GTCTC	1 cut(s)	142
BstMBI	GATC	3 cut(s)	270, 760, 1054
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 488, 497
BstNI	CCWGG	1 cut(s)	450
BstSCI	CCNGG	2 cut(s)	122, 448
BstSFI	CTRYAG	1 cut(s)	564
BstV1I	GCAGC	5 cut(s)	469, 509, 656, 761, 1084
BstX2I	RGATCY	1 cut(s)	270
BstYI	RGATCY	1 cut(s)	270
Bsu15I	ATCGAT	1 cut(s)	392
BsuI	GTATCC	1 cut(s)	693
BsuRI	GGCC	2 cut(s)	377, 879
BsuTUI	ATCGAT	1 cut(s)	392
BtgI	CCRYGG	1 cut(s)	372
BtsCI	GGATG	3 cut(s)	90, 429, 647
BtsI	GCAGTG	1 cut(s)	728
BtsIMutI	CAGTG	2 cut(s)	323, 728
BveI	ACCTGC	2 cut(s)	557, 722
CciI	TCATGA	1 cut(s)	504
Cfr13I	GGNCC	1 cut(s)	878
ClaI	ATCGAT	1 cut(s)	392
CseI	GACGC	1 cut(s)	599
Csp6I	GTAC	5 cut(s)	127, 321, 328, 453, 570
CviAII	CATG	7 cut(s)	163, 334, 373, 382, 505, 745, 789
CviQI	GTAC	5 cut(s)	127, 321, 328, 453, 570
DdeI	CTNAG	3 cut(s)	292, 406, 1068
DpnI	GATC	3 cut(s)	272, 762, 1056
DpnII	GATC	3 cut(s)	270, 760, 1054
EaeI	YGGCCR	1 cut(s)	375
Eam1104I	CTCTTC	2 cut(s)	18, 27
EarI	CTCTTC	2 cut(s)	18, 27
Eco130I	CCWWGG	1 cut(s)	372
Eco24I	GRGCYC	1 cut(s)	611
EcoNI	CCTNNNNNAGG	1 cut(s)	515
EcoRII	CCWGG	1 cut(s)	448
EcoT14I	CCWWGG	1 cut(s)	372
EcoT22I	ATGCAT	1 cut(s)	199
EcoT38I	GRGCYC	1 cut(s)	611
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	7 cut(s)	166, 337, 376, 385, 508, 748, 792
FaqI	GGGAC	2 cut(s)	739, 948
FatI	CATG	7 cut(s)	162, 333, 372, 381, 504, 744, 788
Fnu4HI	GCNGC	5 cut(s)	483, 498, 645, 750, 1073
FokI	GGATG	3 cut(s)	77, 436, 634
FriOI	GRGCYC	1 cut(s)	611
Fsp4HI	GCNGC	5 cut(s)	483, 498, 645, 750, 1073
FspBI	CTAG	3 cut(s)	209, 758, 908
GluI	GCNGC	5 cut(s)	483, 498, 645, 750, 1073
GsaI	CCCAGC	1 cut(s)	305
HaeIII	GGCC	2 cut(s)	377, 879
HapII	CCGG	1 cut(s)	123
HgaI	GACGC	1 cut(s)	599
Hin1II	CATG	7 cut(s)	166, 337, 376, 385, 508, 748, 792
HincII	GTYRAC	1 cut(s)	711
HindII	GTYRAC	1 cut(s)	711
HinfI	GANTC	3 cut(s)	77, 385, 837
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	1 cut(s)	345
Hpy166II	GTNNAC	2 cut(s)	323, 711
Hpy188I	TCNGA	2 cut(s)	270, 855
Hpy188III	TCNNGA	3 cut(s)	505, 758, 988
Hpy8I	GTNNAC	2 cut(s)	323, 711
HpyAV	CCTTC	3 cut(s)	409, 598, 1030
HpyCH4III	ACNGT	2 cut(s)	327, 432
HpyCH4V	TGCA	9 cut(s)	4, 16, 197, 227, 420, 497, 566, 644, 1010
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 488, 497
HpyF3I	CTNAG	3 cut(s)	292, 406, 1068
Hsp92II	CATG	7 cut(s)	166, 337, 376, 385, 508, 748, 792
KpnI	GGTACC	2 cut(s)	456, 573
Kzo9I	GATC	3 cut(s)	270, 760, 1054
LguI	GCTCTTC	1 cut(s)	18
LmnI	GCTCC	4 cut(s)	308, 614, 811, 980
Lsp1109I	GCAGC	5 cut(s)	469, 509, 656, 761, 1084
LweI	GCATC	2 cut(s)	656, 779
MaeI	CTAG	3 cut(s)	209, 758, 908
MalI	GATC	3 cut(s)	272, 762, 1056
MboI	GATC	3 cut(s)	270, 760, 1054
MboII	GAAGA	5 cut(s)	35, 44, 86, 765, 1054
MflI	RGATCY	1 cut(s)	270
MhlI	GDGCHC	1 cut(s)	611
MlsI	TGGCCA	1 cut(s)	377
MluCI	AATT	5 cut(s)	531, 672, 753, 822, 1090
MluNI	TGGCCA	1 cut(s)	377
MlyI	GAGTC	1 cut(s)	379
MnlI	CCTC	7 cut(s)	51, 104, 234, 299, 464, 521, 583
Mox20I	TGGCCA	1 cut(s)	377
Mph1103I	ATGCAT	1 cut(s)	199
MscI	TGGCCA	1 cut(s)	377
MseI	TTAA	1 cut(s)	675
Msp20I	TGGCCA	1 cut(s)	377
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	2 cut(s)	124, 450
MvaI	CCWGG	1 cut(s)	450
MwoI	GCNNNNNNNGC	3 cut(s)	224, 488, 497
NciI	CCSGG	1 cut(s)	124
NcoI	CCATGG	1 cut(s)	372
NdeII	GATC	3 cut(s)	270, 760, 1054
NlaIII	CATG	7 cut(s)	166, 337, 376, 385, 508, 748, 792
NlaIV	GGNNCC	3 cut(s)	454, 571, 610
NsiI	ATGCAT	1 cut(s)	199
PagI	TCATGA	1 cut(s)	504
PciSI	GCTCTTC	1 cut(s)	18
PfeI	GAWTC	2 cut(s)	77, 837
PkrI	GCNGC	5 cut(s)	484, 499, 646, 751, 1074
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
Psp6I	CCWGG	1 cut(s)	448
PspFI	CCCAGC	1 cut(s)	301
PspGI	CCWGG	1 cut(s)	448
PspN4I	GGNNCC	3 cut(s)	454, 571, 610
PspPI	GGNCC	1 cut(s)	878
PstI	CTGCAG	1 cut(s)	568
PsuI	RGATCY	1 cut(s)	270
RsaI	GTAC	5 cut(s)	128, 322, 329, 454, 571
RsaNI	GTAC	5 cut(s)	127, 321, 328, 453, 570
SapI	GCTCTTC	1 cut(s)	18
SaqAI	TTAA	1 cut(s)	675
SatI	GCNGC	5 cut(s)	483, 498, 645, 750, 1073
Sau3AI	GATC	3 cut(s)	270, 760, 1054
Sau96I	GGNCC	1 cut(s)	878
SchI	GAGTC	1 cut(s)	379
ScrFI	CCNGG	2 cut(s)	124, 450
SduI	GDGCHC	1 cut(s)	611
SfaNI	GCATC	2 cut(s)	656, 779
SfcI	CTRYAG	1 cut(s)	564
Sse9I	AATT	5 cut(s)	531, 672, 753, 822, 1090
SspI	AATATT	1 cut(s)	133
SspMI	CTAG	3 cut(s)	209, 758, 908
StyD4I	CCNGG	2 cut(s)	122, 448
StyI	CCWWGG	1 cut(s)	372
TaaI	ACNGT	2 cut(s)	327, 432
TaqI	TCGA	3 cut(s)	72, 80, 392
TasI	AATT	5 cut(s)	531, 672, 753, 822, 1090
TatI	WGTACW	2 cut(s)	320, 327
TfiI	GAWTC	2 cut(s)	77, 837
Tru1I	TTAA	1 cut(s)	675
Tru9I	TTAA	1 cut(s)	675
TscAI	CASTG	2 cut(s)	330, 735
TseI	GCWGC	5 cut(s)	482, 497, 644, 749, 1072
TspDTI	ATGAA	3 cut(s)	391, 618, 627
TspGWI	ACGGA	1 cut(s)	602
TspRI	CASTG	2 cut(s)	330, 735
XagI	CCTNNNNNAGG	1 cut(s)	515
XbaI	TCTAGA	1 cut(s)	757
XcmI	CCANNNNNNNNNTGG	1 cut(s)	464
XspI	CTAG	3 cut(s)	209, 758, 908
Zsp2I	ATGCAT	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.