Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0003698

Physical Location & Seq

Genomic Coordinates Reverse (-)

11224527 .. 11225861

Gene Structure 1335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1144300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGCATGTCTTCAGGAAGATTGCGAATATGGGCGTTTCCAATCAAAACATATGCTTTGCAGGGTTCAATGTTGTCTCCAAGGTCTCTTTAGACAAAGGCATGAGCTGTTATGTGCTTGTGGTTTATGCACATGTTTTCGGAACTCTAGCAACTGCTCTTCTTGCCCTAATTTTCGAAAGCGTAACCTATCTCATGGCAGACAAAACAAGAGCAAAATCAGTGTTCCAGTCTTGCGAAATGTCTTCTTCTTGGGCTTCCTTGGGTGAGAAGCTTGCTAAACTCAGAACAAGTAATCTAATTCTGATTAATCCTCTAAATTTTCGTGTCTATCTTAGAGGAGTGTTAGGAAGAACATTGAATTACATGGGACTTGAGTACACTTCAGCGACTTTTGGAACAGCCATGAGCAACCTTATTCCATGTATTACCTTTATCATAGCAGTTTTGTGCAGGTTTGCTGGCGCGACACTGATGACCCTATACAAGGGCATTGCTGTGATTTCAATGCACATTGAAGGCTCCCATCGAACTGCAGCTACCTCAAAACCATCCATAGACAGAGACTGGATAAAGGGCTCTCTTGTCCTTCTTGTTTCGTATTTTGCATTATCTGCATTCTACATCTTACAGACGGTAACAATTGAAATGTTTCCAGCACCAATCACGCTTACCTTACTCATTTACTTATCGGGGACTTTACTCACGGGGATCATGGCAACGATTCTCGATCACAAAGCATCCTCTTGGAAGTTATCATGGAACATTACACTTCTTGCTCCTATGTATAGTGGAGTAGTGATTTTGGGACTTGTGATTTATCTGCAAACTTTGGTAGCAAAAACAAGAGGTCCAGTTTTCATGACAGCATTTAGACCCCTGGCTACGATTGTTGCGGCTATTATGGGATTGTTTATTTTAGGAGAAGCTATATACTTGGGAAGGTATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

317

Amino Acids

34.67

Weight (kDa)

9.62

Isoelectric Point (pI)

37.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003698)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g39211 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220
malus_domestica	MD09G1144300.v1.1
prunus_persica	Prupe.3G183600_v2.0.a1 Prupe.3G183600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0122881 RchiOBHm_Chr2g0153031 RchiOBHm_Chr2g0153061
rosa_laevigata	RLG00000020670 RLG00000020672 RLG00000020673
rosa_multiflora	Rmu_sc0000859.1_g000002 Rmu_sc0003830.1_g000003
rosa_roxburghii	Rroxscaffold_2G00095240 Rroxscaffold_2G00095260 Rroxscaffold_2G00121070
rosa_rugosa	Rorug02G0437000
rosa_samantha	Rh2AG499000 Rh2AG499200 Rh2BG309300 Rh2BG510400 Rh2BG510500 Rh2CG485400 Rh2CG485600 Rh2DG521900 Rh2DG522100
rosa_wichuraiana	Rw2G040950 Rw2G040970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	441
AccII	CGCG	1 cut(s)	464
AciI	CCGC	1 cut(s)	893
AclWI	GGATC	1 cut(s)	716
AcsI	RAATTY	1 cut(s)	316
AcuI	CTGAAG	1 cut(s)	366
AfaI	GTAC	1 cut(s)	377
AfiI	CCNNNNNNNGG	1 cut(s)	484
AflIII	ACRYGT	1 cut(s)	130
AgsI	TTSAA	5 cut(s)	67, 358, 504, 515, 644
AjnI	CCWGG	1 cut(s)	876
AluBI	AGCT	4 cut(s)	105, 271, 536, 926
AluI	AGCT	4 cut(s)	105, 271, 536, 926
Alw26I	GTCTC	3 cut(s)	79, 88, 555
AlwI	GGATC	1 cut(s)	716
AlwNI	CAGNNNCTG	1 cut(s)	564
ApeKI	GCWGC	1 cut(s)	533
ApoI	RAATTY	1 cut(s)	316
AseI	ATTAAT	1 cut(s)	306
Asp700I	GAANNNNTTC	1 cut(s)	648
AspLEI	GCGC	1 cut(s)	464
AspS9I	GGNCC	1 cut(s)	848
AsuHPI	GGTGA	1 cut(s)	275
AsuII	TTCGAA	1 cut(s)	174
AvaII	GGWCC	1 cut(s)	848
BanII	GRGCYC	1 cut(s)	578
BbsI	GAAGAC	1 cut(s)	234
BbvI	GCAGC	1 cut(s)	545
BccI	CCATC	2 cut(s)	531, 556
BciT130I	CCWGG	1 cut(s)	878
BcoDI	GTCTC	3 cut(s)	79, 88, 555
BfaI	CTAG	1 cut(s)	146
BfmI	CTRYAG	1 cut(s)	531
BfuAI	ACCTGC	1 cut(s)	441
BisI	GCNGC	2 cut(s)	534, 894
BlsI	GCNGC	2 cut(s)	535, 895
Bme1390I	CCNGG	1 cut(s)	878
Bme18I	GGWCC	1 cut(s)	848
BmgT120I	GGNCC	1 cut(s)	848
BmiI	GGNNCC	1 cut(s)	520
BmrFI	CCNGG	1 cut(s)	878
BmsI	GCATC	1 cut(s)	746
BpiI	GAAGAC	1 cut(s)	234
Bpu14I	TTCGAA	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	392
BsaI	GGTCTC	1 cut(s)	88
BsaJI	CCNNGG	3 cut(s)	78, 258, 876
Bsc4I	CCNNNNNNNGG	1 cut(s)	484
Bse1I	ACTGG	3 cut(s)	226, 569, 851
Bse3DI	GCAATG	1 cut(s)	489
BseBI	CCWGG	1 cut(s)	878
BseDI	CCNNGG	3 cut(s)	78, 258, 876
BseGI	GGATG	2 cut(s)	548, 737
BseLI	CCNNNNNNNGG	1 cut(s)	484
BseMI	GCAATG	1 cut(s)	489
BseMII	CTCAG	1 cut(s)	295
BseNI	ACTGG	3 cut(s)	226, 569, 851
BseRI	GAGGAG	1 cut(s)	351
BseXI	GCAGC	1 cut(s)	545
BsgI	GTGCAG	1 cut(s)	469
Bsh1236I	CGCG	1 cut(s)	464
BslFI	GGGAC	3 cut(s)	381, 706, 819
BslI	CCNNNNNNNGG	1 cut(s)	484
BsmAI	GTCTC	3 cut(s)	79, 88, 555
BsmFI	GGGAC	3 cut(s)	381, 706, 819
BsmI	GAATGC	1 cut(s)	614
Bso31I	GGTCTC	1 cut(s)	88
Bsp119I	TTCGAA	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	578
Bsp143I	GATC	2 cut(s)	708, 727
BspACI	CCGC	1 cut(s)	893
BspCNI	CTCAG	1 cut(s)	294
BspFNI	CGCG	1 cut(s)	464
BspHI	TCATGA	1 cut(s)	858
BspLI	GGNNCC	1 cut(s)	520
BspMAI	CTGCAG	1 cut(s)	535
BspMI	ACCTGC	1 cut(s)	441
BspPI	GGATC	1 cut(s)	716
BspQI	GCTCTTC	1 cut(s)	162
BspT104I	TTCGAA	1 cut(s)	174
BspTNI	GGTCTC	1 cut(s)	88
BsrDI	GCAATG	1 cut(s)	489
BsrI	ACTGG	3 cut(s)	226, 569, 851
BssECI	CCNNGG	3 cut(s)	78, 258, 876
BssMI	GATC	2 cut(s)	708, 727
BssT1I	CCWWGG	2 cut(s)	78, 258
Bst2UI	CCWGG	1 cut(s)	878
Bst4CI	ACNGT	1 cut(s)	634
Bst6I	CTCTTC	1 cut(s)	162
BstAPI	GCANNNNNTGC	1 cut(s)	611
BstBI	TTCGAA	1 cut(s)	174
BstC8I	GCNNGC	2 cut(s)	273, 460
BstDEI	CTNAG	2 cut(s)	281, 332
BstENI	CCTNNNNNAGG	1 cut(s)	482
BstF5I	GGATG	2 cut(s)	548, 737
BstFNI	CGCG	1 cut(s)	464
BstHHI	GCGC	1 cut(s)	464
BstKTI	GATC	2 cut(s)	711, 730
BstMAI	GTCTC	3 cut(s)	79, 88, 555
BstMBI	GATC	2 cut(s)	708, 727
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 611
BstNI	CCWGG	1 cut(s)	878
BstNSI	RCATGY	2 cut(s)	8, 134
BstSCI	CCNGG	1 cut(s)	876
BstSFI	CTRYAG	1 cut(s)	531
BstUI	CGCG	1 cut(s)	464
BstV1I	GCAGC	1 cut(s)	545
BstV2I	GAAGAC	1 cut(s)	234
BtsCI	GGATG	2 cut(s)	548, 737
BtsIMutI	CAGTG	2 cut(s)	225, 467
BveI	ACCTGC	1 cut(s)	441
Cac8I	GCNNGC	2 cut(s)	273, 460
CaiI	CAGNNNCTG	1 cut(s)	564
CciI	TCATGA	1 cut(s)	858
CfoI	GCGC	1 cut(s)	464
Cfr13I	GGNCC	1 cut(s)	848
Csp6I	GTAC	1 cut(s)	376
CviQI	GTAC	1 cut(s)	376
DdeI	CTNAG	2 cut(s)	281, 332
DpnI	GATC	2 cut(s)	710, 729
DpnII	GATC	2 cut(s)	708, 727
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
Eco130I	CCWWGG	2 cut(s)	78, 258
Eco24I	GRGCYC	1 cut(s)	578
Eco31I	GGTCTC	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	848
Eco57I	CTGAAG	1 cut(s)	366
EcoNI	CCTNNNNNAGG	1 cut(s)	482
EcoRII	CCWGG	1 cut(s)	876
EcoT14I	CCWWGG	2 cut(s)	78, 258
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	578
ErhI	CCWWGG	2 cut(s)	78, 258
FaqI	GGGAC	3 cut(s)	381, 706, 819
FauNDI	CATATG	1 cut(s)	50
Fnu4HI	GCNGC	2 cut(s)	534, 894
FokI	GGATG	2 cut(s)	535, 724
FriOI	GRGCYC	1 cut(s)	578
Fsp4HI	GCNGC	2 cut(s)	534, 894
FspBI	CTAG	1 cut(s)	146
GlaI	GCGC	1 cut(s)	463
GluI	GCNGC	2 cut(s)	534, 894
HhaI	GCGC	1 cut(s)	464
Hin6I	GCGC	1 cut(s)	462
HinP1I	GCGC	1 cut(s)	462
HindIII	AAGCTT	1 cut(s)	269
HinfI	GANTC	1 cut(s)	721
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	1 cut(s)	378
Hpy188I	TCNGA	3 cut(s)	140, 284, 303
Hpy188III	TCNNGA	3 cut(s)	13, 725, 859
Hpy8I	GTNNAC	1 cut(s)	378
HpyAV	CCTTC	3 cut(s)	509, 596, 933
HpyCH4III	ACNGT	1 cut(s)	634
HpyCH4V	TGCA	9 cut(s)	4, 59, 128, 450, 508, 533, 605, 614, 823
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 611
HpyF3I	CTNAG	2 cut(s)	281, 332
HspAI	GCGC	1 cut(s)	462
Kzo9I	GATC	2 cut(s)	708, 727
LguI	GCTCTTC	1 cut(s)	162
LmnI	GCTCC	2 cut(s)	524, 781
LpnPI	CCDG	9 cut(s)	45, 239, 436, 444, 550, 666, 863, 864, 890
Lsp1109I	GCAGC	1 cut(s)	545
LweI	GCATC	1 cut(s)	746
MaeI	CTAG	1 cut(s)	146
MaeIII	GTNAC	2 cut(s)	181, 634
MalI	GATC	2 cut(s)	710, 729
MboI	GATC	2 cut(s)	708, 727
MboII	GAAGA	5 cut(s)	28, 149, 234, 237, 360
MfeI	CAATTG	1 cut(s)	639
MhlI	GDGCHC	1 cut(s)	578
MluCI	AATT	5 cut(s)	168, 297, 316, 358, 639
MnlI	CCTC	5 cut(s)	321, 329, 550, 751, 839
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	648
MseI	TTAA	1 cut(s)	306
MslI	CAYNNNNRTG	1 cut(s)	494
MspR9I	CCNGG	1 cut(s)	878
MunI	CAATTG	1 cut(s)	639
Mva1269I	GAATGC	1 cut(s)	614
MvaI	CCWGG	1 cut(s)	878
MvnI	CGCG	1 cut(s)	464
MwoI	GCNNNNNNNGC	2 cut(s)	161, 611
NdeI	CATATG	1 cut(s)	50
NdeII	GATC	2 cut(s)	708, 727
NlaIV	GGNNCC	1 cut(s)	520
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	8, 134
NspV	TTCGAA	1 cut(s)	174
PagI	TCATGA	1 cut(s)	858
PciI	ACATGT	1 cut(s)	130
PciSI	GCTCTTC	1 cut(s)	162
PctI	GAATGC	1 cut(s)	614
PdmI	GAANNNNTTC	1 cut(s)	648
PfeI	GAWTC	1 cut(s)	721
PkrI	GCNGC	2 cut(s)	535, 895
PscI	ACATGT	1 cut(s)	130
PshBI	ATTAAT	1 cut(s)	306
Psp6I	CCWGG	1 cut(s)	876
PspGI	CCWGG	1 cut(s)	876
PspN4I	GGNNCC	1 cut(s)	520
PspPI	GGNCC	1 cut(s)	848
PsrI	GAACNNNNNNTAC	2 cut(s)	520, 552
PstI	CTGCAG	1 cut(s)	535
PstNI	CAGNNNCTG	1 cut(s)	564
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
RseI	CAYNNNNRTG	1 cut(s)	494
SapI	GCTCTTC	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	2 cut(s)	534, 894
Sau3AI	GATC	2 cut(s)	708, 727
Sau96I	GGNCC	1 cut(s)	848
ScrFI	CCNGG	1 cut(s)	878
SduI	GDGCHC	1 cut(s)	578
SfaNI	GCATC	1 cut(s)	746
SfcI	CTRYAG	1 cut(s)	531
SfuI	TTCGAA	1 cut(s)	174
SinI	GGWCC	1 cut(s)	848
SmiMI	CAYNNNNRTG	1 cut(s)	494
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
Sse9I	AATT	5 cut(s)	168, 297, 316, 358, 639
SsiI	CCGC	1 cut(s)	893
SspMI	CTAG	1 cut(s)	146
StyD4I	CCNGG	1 cut(s)	876
StyI	CCWWGG	2 cut(s)	78, 258
TaaI	ACNGT	1 cut(s)	634
TaqI	TCGA	3 cut(s)	174, 526, 726
TasI	AATT	5 cut(s)	168, 297, 316, 358, 639
TatI	WGTACW	1 cut(s)	375
TauI	GCSGC	1 cut(s)	896
TfiI	GAWTC	1 cut(s)	721
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	2 cut(s)	225, 474
TseI	GCWGC	1 cut(s)	533
TspDTI	ATGAA	1 cut(s)	847
TspRI	CASTG	2 cut(s)	225, 474
VpaK11BI	GGWCC	1 cut(s)	848
VspI	ATTAAT	1 cut(s)	306
XagI	CCTNNNNNAGG	1 cut(s)	482
XapI	RAATTY	1 cut(s)	316
XceI	RCATGY	2 cut(s)	8, 134
XmnI	GAANNNNTTC	1 cut(s)	648
XspI	CTAG	1 cut(s)	146
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.