Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003698

Physical Location & Seq

Genomic Coordinates Reverse (-)

53517605 .. 53519313

Gene Structure 1709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00121070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGCAAAAAGTAATGCAGATGGAAGAGCAAGAAGAGAGAGTGAAAGGAAGCAGGTACAATATTGTCTCCAAAGTCGCTCTAGACAAGGGCATGAGCCGTTATGTGCTTGTGGTTTATGGACATGCTTTTGGAACTCTAGCAACTGCTCTTTTTGCATTTCTCTTTGAGAGGTCTGCTGGTGGAGTGTTAGGAAGAACACTATACTACATGGGATTGGAATACACTTCACCAGCTTTTGCAACTGCCATGGGCAACATGATTCCATCGATTACCTTCATCTTAGCTGTTTTGTGCAGGATGGAACAGTTCGATATTTCGAAGCTTGGTACCCAAGCCAAGATTGGGGGAACTCTTGCTGCCTTTGCTGGTGCAACACTCATGACCCTCTATAAGGGTGTTGCTGTAATTACAACGCACACCAAAAGCTCCCATCAAACTGCAGCTACCTCAAAATCATCTACAGACGCAGAATGGATTAAGGGCTCCCTAGTCCTTATTGTTTCATTTAGTTCATTAGCAGCATTCTATATCTTACAGACATCAACAATTAAAATGTATCCAGCACCAATCACTCTTACATCATTGACCTGCTTCTCTGGGACACTGCCCTCAACAATTATGGCAGCAATTCTAGATCACAAAGCATCTTCTTGGAATGTTTTGGGAGCTTTCTTGATAGTTCTTGGTCTGTACGCAACTCTTTGGGGAAAGAAAAAAGAGAAGGAGAAGAAGTCAATGGATCATGGTGTATCTCAGCAAGCTATTGAGATCAATCTAGAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

261

Amino Acids

28.36

Weight (kDa)

9.38

Isoelectric Point (pI)

37.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003698)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g39211 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220
malus_domestica	MD09G1144300.v1.1
prunus_persica	Prupe.3G183600_v2.0.a1 Prupe.3G183600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0122881 RchiOBHm_Chr2g0153031 RchiOBHm_Chr2g0153061
rosa_laevigata	RLG00000020670 RLG00000020672 RLG00000020673
rosa_multiflora	Rmu_sc0000859.1_g000002 Rmu_sc0003830.1_g000003
rosa_roxburghii	Rroxscaffold_2G00095240 Rroxscaffold_2G00095260 Rroxscaffold_2G00121070
rosa_rugosa	Rorug02G0437000
rosa_samantha	Rh2AG499000 Rh2AG499200 Rh2BG309300 Rh2BG510400 Rh2BG510500 Rh2CG485400 Rh2CG485600 Rh2DG521900 Rh2DG522100
rosa_wichuraiana	Rw2G040950 Rw2G040970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	42, 596
Acc65I	GGTACC	1 cut(s)	326
AccB1I	GGYRCC	1 cut(s)	326
AclWI	GGATC	1 cut(s)	747
AfaI	GTAC	3 cut(s)	56, 328, 692
AfiI	CCNNNNNNNGG	2 cut(s)	342, 391
AluBI	AGCT	7 cut(s)	233, 284, 322, 426, 443, 668, 761
AluI	AGCT	7 cut(s)	233, 284, 322, 426, 443, 668, 761
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	1 cut(s)	747
ApeKI	GCWGC	4 cut(s)	356, 440, 518, 623
Asp718I	GGTACC	1 cut(s)	326
AsuHPI	GGTGA	1 cut(s)	219
AsuII	TTCGAA	1 cut(s)	317
BanI	GGYRCC	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	485
BbvI	GCAGC	4 cut(s)	343, 452, 530, 635
BccI	CCATC	4 cut(s)	13, 271, 292, 438
BceAI	ACGGC	1 cut(s)	81
BciVI	GTATCC	1 cut(s)	567
BcoDI	GTCTC	1 cut(s)	70
BfaI	CTAG	5 cut(s)	80, 137, 488, 632, 776
BfmI	CTRYAG	2 cut(s)	438, 459
BfuAI	ACCTGC	2 cut(s)	42, 596
BfuI	GTATCC	1 cut(s)	567
BisI	GCNGC	4 cut(s)	357, 441, 519, 624
BlsI	GCNGC	4 cut(s)	358, 442, 520, 625
BmiI	GGNNCC	2 cut(s)	328, 484
BmsI	GCATC	1 cut(s)	653
Bpu14I	TTCGAA	1 cut(s)	317
Bsa29I	ATCGAT	1 cut(s)	266
BsaJI	CCNNGG	1 cut(s)	246
BsaXI	ACNNNNNCTCC	2 cut(s)	716, 746
Bsc4I	CCNNNNNNNGG	2 cut(s)	342, 391
BseCI	ATCGAT	1 cut(s)	266
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	1 cut(s)	303
BseLI	CCNNNNNNNGG	2 cut(s)	342, 391
BseMII	CTCAG	1 cut(s)	767
BseXI	GCAGC	4 cut(s)	343, 452, 530, 635
BsgI	GTGCAG	1 cut(s)	313
BshNI	GGYRCC	1 cut(s)	326
BshVI	ATCGAT	1 cut(s)	266
BslFI	GGGAC	1 cut(s)	613
BslI	CCNNNNNNNGG	2 cut(s)	342, 391
BsmAI	GTCTC	1 cut(s)	70
BsmFI	GGGAC	1 cut(s)	613
BsmI	GAATGC	1 cut(s)	521
Bsp119I	TTCGAA	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	485
Bsp143I	GATC	3 cut(s)	634, 739, 768
Bsp19I	CCATGG	1 cut(s)	246
BspCNI	CTCAG	1 cut(s)	766
BspDI	ATCGAT	1 cut(s)	266
BspHI	TCATGA	1 cut(s)	378
BspLI	GGNNCC	2 cut(s)	328, 484
BspMAI	CTGCAG	1 cut(s)	442
BspMI	ACCTGC	2 cut(s)	42, 596
BspPI	GGATC	1 cut(s)	747
BspQI	GCTCTTC	1 cut(s)	18
BspT104I	TTCGAA	1 cut(s)	317
BspT107I	GGYRCC	1 cut(s)	326
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	3 cut(s)	634, 739, 768
BssT1I	CCWWGG	1 cut(s)	246
Bst4CI	ACNGT	1 cut(s)	306
Bst6I	CTCTTC	2 cut(s)	18, 27
BstBI	TTCGAA	1 cut(s)	317
BstC8I	GCNNGC	1 cut(s)	759
BstDEI	CTNAG	2 cut(s)	280, 753
BstDSI	CCRYGG	1 cut(s)	246
BstENI	CCTNNNNNAGG	1 cut(s)	389
BstF5I	GGATG	1 cut(s)	303
BstKTI	GATC	3 cut(s)	637, 742, 771
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	3 cut(s)	634, 739, 768
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 362
BstNSI	RCATGY	1 cut(s)	125
BstSFI	CTRYAG	2 cut(s)	438, 459
BstV1I	GCAGC	4 cut(s)	343, 452, 530, 635
Bsu15I	ATCGAT	1 cut(s)	266
BsuI	GTATCC	1 cut(s)	567
BsuTUI	ATCGAT	1 cut(s)	266
BtgI	CCRYGG	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	303
BtsI	GCAGTG	1 cut(s)	602
BtsIMutI	CAGTG	1 cut(s)	602
BveI	ACCTGC	2 cut(s)	42, 596
Cac8I	GCNNGC	1 cut(s)	759
CciI	TCATGA	1 cut(s)	378
ClaI	ATCGAT	1 cut(s)	266
CseI	GACGC	1 cut(s)	473
Csp6I	GTAC	3 cut(s)	55, 327, 691
CviAII	CATG	7 cut(s)	91, 122, 208, 247, 256, 379, 743
CviQI	GTAC	3 cut(s)	55, 327, 691
DdeI	CTNAG	2 cut(s)	280, 753
DpnI	GATC	3 cut(s)	636, 741, 770
DpnII	GATC	3 cut(s)	634, 739, 768
Eam1104I	CTCTTC	2 cut(s)	18, 27
EarI	CTCTTC	2 cut(s)	18, 27
Eco130I	CCWWGG	1 cut(s)	246
Eco24I	GRGCYC	1 cut(s)	485
EcoNI	CCTNNNNNAGG	1 cut(s)	389
EcoT14I	CCWWGG	1 cut(s)	246
EcoT38I	GRGCYC	1 cut(s)	485
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	7 cut(s)	94, 125, 211, 250, 259, 382, 746
FaqI	GGGAC	1 cut(s)	613
FatI	CATG	7 cut(s)	90, 121, 207, 246, 255, 378, 742
Fnu4HI	GCNGC	4 cut(s)	357, 441, 519, 624
FokI	GGATG	1 cut(s)	310
FriOI	GRGCYC	1 cut(s)	485
Fsp4HI	GCNGC	4 cut(s)	357, 441, 519, 624
FspBI	CTAG	5 cut(s)	80, 137, 488, 632, 776
GluI	GCNGC	4 cut(s)	357, 441, 519, 624
HgaI	GACGC	1 cut(s)	473
Hin1II	CATG	7 cut(s)	94, 125, 211, 250, 259, 382, 746
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	1 cut(s)	259
HphI	GGTGA	1 cut(s)	219
Hpy188III	TCNNGA	5 cut(s)	80, 379, 632, 673, 776
HpyAV	CCTTC	2 cut(s)	283, 715
HpyCH4III	ACNGT	1 cut(s)	306
HpyCH4V	TGCA	7 cut(s)	4, 16, 155, 239, 294, 371, 440
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 362
HpyF3I	CTNAG	2 cut(s)	280, 753
Hsp92II	CATG	7 cut(s)	94, 125, 211, 250, 259, 382, 746
KpnI	GGTACC	1 cut(s)	330
Kzo9I	GATC	3 cut(s)	634, 739, 768
LguI	GCTCTTC	1 cut(s)	18
LmnI	GCTCC	3 cut(s)	431, 488, 665
LpnPI	CCDG	8 cut(s)	37, 162, 243, 280, 351, 573, 582, 601
Lsp1109I	GCAGC	4 cut(s)	343, 452, 530, 635
LweI	GCATC	1 cut(s)	653
MaeI	CTAG	5 cut(s)	80, 137, 488, 632, 776
MalI	GATC	3 cut(s)	636, 741, 770
MboI	GATC	3 cut(s)	634, 739, 768
MboII	GAAGA	5 cut(s)	35, 44, 204, 639, 739
MhlI	GDGCHC	1 cut(s)	485
MluCI	AATT	4 cut(s)	405, 546, 615, 627
MnlI	CCTC	4 cut(s)	162, 395, 457, 619
MseI	TTAA	2 cut(s)	477, 549
Mva1269I	GAATGC	1 cut(s)	521
MwoI	GCNNNNNNNGC	2 cut(s)	152, 362
NcoI	CCATGG	1 cut(s)	246
NdeII	GATC	3 cut(s)	634, 739, 768
NlaIII	CATG	7 cut(s)	94, 125, 211, 250, 259, 382, 746
NlaIV	GGNNCC	2 cut(s)	328, 484
NspI	RCATGY	1 cut(s)	125
NspV	TTCGAA	1 cut(s)	317
PagI	TCATGA	1 cut(s)	378
PciSI	GCTCTTC	1 cut(s)	18
PctI	GAATGC	1 cut(s)	521
PfeI	GAWTC	1 cut(s)	259
PkrI	GCNGC	4 cut(s)	358, 442, 520, 625
PspN4I	GGNNCC	2 cut(s)	328, 484
PstI	CTGCAG	1 cut(s)	442
RsaI	GTAC	3 cut(s)	56, 328, 692
RsaNI	GTAC	3 cut(s)	55, 327, 691
SapI	GCTCTTC	1 cut(s)	18
SaqAI	TTAA	2 cut(s)	477, 549
SatI	GCNGC	4 cut(s)	357, 441, 519, 624
Sau3AI	GATC	3 cut(s)	634, 739, 768
SduI	GDGCHC	1 cut(s)	485
SfaNI	GCATC	1 cut(s)	653
SfcI	CTRYAG	2 cut(s)	438, 459
SfuI	TTCGAA	1 cut(s)	317
Sse9I	AATT	4 cut(s)	405, 546, 615, 627
SspI	AATATT	1 cut(s)	61
SspMI	CTAG	5 cut(s)	80, 137, 488, 632, 776
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	1 cut(s)	306
TaqI	TCGA	3 cut(s)	266, 309, 317
TasI	AATT	4 cut(s)	405, 546, 615, 627
TfiI	GAWTC	1 cut(s)	259
Tru1I	TTAA	2 cut(s)	477, 549
Tru9I	TTAA	2 cut(s)	477, 549
TscAI	CASTG	1 cut(s)	609
TseI	GCWGC	4 cut(s)	356, 440, 518, 623
TspDTI	ATGAA	3 cut(s)	265, 492, 501
TspRI	CASTG	1 cut(s)	609
XagI	CCTNNNNNAGG	1 cut(s)	389
XbaI	TCTAGA	3 cut(s)	79, 631, 775
XceI	RCATGY	1 cut(s)	125
XcmI	CCANNNNNNNNNTGG	1 cut(s)	338
XspI	CTAG	5 cut(s)	80, 137, 488, 632, 776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.