Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003698

Physical Location & Seq

Genomic Coordinates Reverse (-)

70487857 .. 70489568

Gene Structure 1712 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52217

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGCAGATGGAAGAGCAAGAAGAGAGAGTTAAAGGAAGCCGTAAGTGGGATAGAGTAATCGAAGAATCGAAACCCTACATCCTCTGTATATTTTGTAATGTATGCTTTGCCGGGTACAATATTGTCTCCAAAGTCGCTCTACACAAAGGCATGAGCAGATATGTGCTTGTGGTTTATGGATATGCGTTTGGAACTCTAGCAACTGCTCTTTTTGCATTTCTCTTTGAGAGGAAAAATGAGAGCAAAATCAATGTTCAGATCTTGCGAAATGTCTTTTTCTTAGGTCTGCTGGGAGGAGCGTTAGGAAGTACACTGTACTACATGGGATTGGAATATACTTCACCAGCTTTTACATCTGCCATGGCCAACATGACTCCATCGATTACCTTCATCTTAGCTGTTTTGTGCAGGATGGAACAGTTTGATATTTCCAAGCCTGGTACCCAAGCCAAGATTGGAGGAACTCTTGCTGCCTTTGCTGGTGCAACACTCATGACCCTCTACAAGGGCGTTGCTGTAATAACAATGCACACCAAAAGCTCCCATCAAACTGCAGGTACCTCAAAATCATCTACAGACGCAGAATGGTTGAAGGGCTCCCTTGTCCTTATTGTTTCATATAGTTCATTTGCAGCATCCTATATCTTACAGACATCAACAATAAAAATGTATCCAGCACCAATCACTCTTACATCATTGACCTGCTTATCTGGGACACTGCTCTCAACAATCATGGCAGGAATTCTAGATCACAAAGCATCTTCTTGGAAGTTATCATGGAACACACTTCTTGCTCCTATATATTGTGGAACTGTGATTTATGGAATCACATTTTATGTTCAGACCTTAGTAGTAATAACAAAAGGCCCAGTTTTCACGACAGCTTTTAGACCACTAGCTACCATTGTTGTTGCTATAATGGGACTACTCATTTTAGGAGAAGCTATATACTTGGGAAGTGTTTTGGGAGCTTTCTTGATAGTTCTTGGTCTGTATGCCACTCTTTGGGGAAAGAAAAAAGAGAAGGAGAAGAAGTCAATGGATCATGGTATATCTCAGCAAGCTATTGACATCAATTTAGAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

362

Amino Acids

39.56

Weight (kDa)

9.25

Isoelectric Point (pI)

34.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	26 - 165	2.4e-15	EamA-like transporter family
EamA	PF00892	198 - 335	2.8e-07	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003698)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g39211 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220
malus_domestica	MD09G1144300.v1.1
prunus_persica	Prupe.3G183600_v2.0.a1 Prupe.3G183600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0122881 RchiOBHm_Chr2g0153031 RchiOBHm_Chr2g0153061
rosa_laevigata	RLG00000020670 RLG00000020672 RLG00000020673
rosa_multiflora	Rmu_sc0000859.1_g000002 Rmu_sc0003830.1_g000003
rosa_roxburghii	Rroxscaffold_2G00095240 Rroxscaffold_2G00095260 Rroxscaffold_2G00121070
rosa_rugosa	Rorug02G0437000
rosa_samantha	Rh2AG499000 Rh2AG499200 Rh2BG309300 Rh2BG510400 Rh2BG510500 Rh2CG485400 Rh2CG485600 Rh2DG521900 Rh2DG522100
rosa_wichuraiana	Rw2G040950 Rw2G040970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	545, 710
Acc65I	GGTACC	2 cut(s)	440, 557
AccB1I	GGYRCC	2 cut(s)	440, 557
AccB7I	CCANNNNNTGG	1 cut(s)	1005
AclWI	GGATC	1 cut(s)	1050
AcoI	YGGCCR	1 cut(s)	363
AcsI	RAATTY	1 cut(s)	741
AfaI	GTAC	5 cut(s)	116, 310, 317, 442, 559
AfiI	CCNNNNNNNGG	3 cut(s)	46, 505, 1005
AgsI	TTSAA	1 cut(s)	592
AjnI	CCWGG	1 cut(s)	436
AluBI	AGCT	8 cut(s)	347, 398, 540, 884, 899, 944, 971, 1064
AluI	AGCT	8 cut(s)	347, 398, 540, 884, 899, 944, 971, 1064
Alw26I	GTCTC	1 cut(s)	130
AlwI	GGATC	1 cut(s)	1050
AoxI	GGCC	2 cut(s)	363, 865
ApeKI	GCWGC	2 cut(s)	470, 632
ApoI	RAATTY	1 cut(s)	741
Asp718I	GGTACC	2 cut(s)	440, 557
AspS9I	GGNCC	1 cut(s)	866
AsuC2I	CCSGG	1 cut(s)	112
AsuHPI	GGTGA	1 cut(s)	333
BalI	TGGCCA	1 cut(s)	365
BanI	GGYRCC	2 cut(s)	440, 557
BanII	GRGCYC	1 cut(s)	599
BbvI	GCAGC	2 cut(s)	457, 644
BccI	CCATC	3 cut(s)	385, 406, 552
BceAI	ACGGC	1 cut(s)	24
BciT130I	CCWGG	1 cut(s)	438
BciVI	GTATCC	1 cut(s)	681
BcnI	CCSGG	1 cut(s)	112
BcoDI	GTCTC	1 cut(s)	130
BfaI	CTAG	3 cut(s)	197, 746, 896
BfmI	CTRYAG	2 cut(s)	552, 573
BfuAI	ACCTGC	2 cut(s)	545, 710
BfuI	GTATCC	1 cut(s)	681
BglII	AGATCT	1 cut(s)	258
BisI	GCNGC	2 cut(s)	471, 633
BlsI	GCNGC	2 cut(s)	472, 634
Bme1390I	CCNGG	2 cut(s)	112, 438
BmgT120I	GGNCC	1 cut(s)	866
BmiI	GGNNCC	3 cut(s)	442, 559, 598
BmrFI	CCNGG	2 cut(s)	112, 438
BmrI	ACTGGG	1 cut(s)	863
BmsI	GCATC	2 cut(s)	644, 767
BmuI	ACTGGG	1 cut(s)	863
BpuMI	CCSGG	1 cut(s)	112
Bsa29I	ATCGAT	1 cut(s)	380
BsaJI	CCNNGG	1 cut(s)	360
BsaXI	ACNNNNNCTCC	2 cut(s)	1019, 1049
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 505, 1005
Bse1I	ACTGG	1 cut(s)	869
BseBI	CCWGG	1 cut(s)	438
BseCI	ATCGAT	1 cut(s)	380
BseDI	CCNNGG	1 cut(s)	360
BseGI	GGATG	3 cut(s)	78, 417, 635
BseLI	CCNNNNNNNGG	3 cut(s)	46, 505, 1005
BseMII	CTCAG	1 cut(s)	1070
BseNI	ACTGG	1 cut(s)	869
BseRI	GAGGAG	1 cut(s)	309
BseXI	GCAGC	2 cut(s)	457, 644
BseYI	CCCAGC	1 cut(s)	289
BsgI	GTGCAG	1 cut(s)	427
BshFI	GGCC	2 cut(s)	365, 867
BshNI	GGYRCC	2 cut(s)	440, 557
BshVI	ATCGAT	1 cut(s)	380
BsiSI	CCGG	1 cut(s)	111
BslFI	GGGAC	2 cut(s)	727, 936
BslI	CCNNNNNNNGG	3 cut(s)	46, 505, 1005
BsmAI	GTCTC	1 cut(s)	130
BsmFI	GGGAC	2 cut(s)	727, 936
BsnI	GGCC	2 cut(s)	365, 867
Bsp1286I	GDGCHC	1 cut(s)	599
Bsp143I	GATC	3 cut(s)	258, 748, 1042
Bsp19I	CCATGG	1 cut(s)	360
BspANI	GGCC	2 cut(s)	365, 867
BspCNI	CTCAG	1 cut(s)	1069
BspDI	ATCGAT	1 cut(s)	380
BspHI	TCATGA	1 cut(s)	492
BspLI	GGNNCC	3 cut(s)	442, 559, 598
BspMAI	CTGCAG	1 cut(s)	556
BspMI	ACCTGC	2 cut(s)	545, 710
BspPI	GGATC	1 cut(s)	1050
BspQI	GCTCTTC	1 cut(s)	6
BspT107I	GGYRCC	2 cut(s)	440, 557
BsrI	ACTGG	1 cut(s)	869
BssECI	CCNNGG	1 cut(s)	360
BssMI	GATC	3 cut(s)	258, 748, 1042
BssT1I	CCWWGG	1 cut(s)	360
Bst2UI	CCWGG	1 cut(s)	438
Bst4CI	ACNGT	3 cut(s)	315, 420, 814
Bst6I	CTCTTC	2 cut(s)	6, 15
BstC8I	GCNNGC	1 cut(s)	1062
BstDEI	CTNAG	4 cut(s)	280, 394, 847, 1056
BstDSI	CCRYGG	1 cut(s)	360
BstENI	CCTNNNNNAGG	1 cut(s)	503
BstF5I	GGATG	3 cut(s)	78, 417, 635
BstKTI	GATC	3 cut(s)	261, 751, 1045
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	3 cut(s)	258, 748, 1042
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 476
BstNI	CCWGG	1 cut(s)	438
BstSCI	CCNGG	2 cut(s)	110, 436
BstSFI	CTRYAG	2 cut(s)	552, 573
BstV1I	GCAGC	2 cut(s)	457, 644
BstX2I	RGATCY	1 cut(s)	258
BstYI	RGATCY	1 cut(s)	258
Bsu15I	ATCGAT	1 cut(s)	380
BsuI	GTATCC	1 cut(s)	681
BsuRI	GGCC	2 cut(s)	365, 867
BsuTUI	ATCGAT	1 cut(s)	380
BtgI	CCRYGG	1 cut(s)	360
BtsCI	GGATG	3 cut(s)	78, 417, 635
BtsI	GCAGTG	1 cut(s)	716
BtsIMutI	CAGTG	2 cut(s)	311, 716
BveI	ACCTGC	2 cut(s)	545, 710
Cac8I	GCNNGC	1 cut(s)	1062
CciI	TCATGA	1 cut(s)	492
Cfr13I	GGNCC	1 cut(s)	866
ClaI	ATCGAT	1 cut(s)	380
CseI	GACGC	1 cut(s)	587
Csp6I	GTAC	5 cut(s)	115, 309, 316, 441, 558
CviAII	CATG	8 cut(s)	151, 322, 361, 370, 493, 733, 777, 1046
CviQI	GTAC	5 cut(s)	115, 309, 316, 441, 558
DdeI	CTNAG	4 cut(s)	280, 394, 847, 1056
DpnI	GATC	3 cut(s)	260, 750, 1044
DpnII	GATC	3 cut(s)	258, 748, 1042
EaeI	YGGCCR	1 cut(s)	363
Eam1104I	CTCTTC	2 cut(s)	6, 15
EarI	CTCTTC	2 cut(s)	6, 15
Eco130I	CCWWGG	1 cut(s)	360
Eco24I	GRGCYC	1 cut(s)	599
EcoNI	CCTNNNNNAGG	1 cut(s)	503
EcoRI	GAATTC	1 cut(s)	741
EcoRII	CCWGG	1 cut(s)	436
EcoT14I	CCWWGG	1 cut(s)	360
EcoT38I	GRGCYC	1 cut(s)	599
ErhI	CCWWGG	1 cut(s)	360
FaeI	CATG	8 cut(s)	154, 325, 364, 373, 496, 736, 780, 1049
FaqI	GGGAC	2 cut(s)	727, 936
FatI	CATG	8 cut(s)	150, 321, 360, 369, 492, 732, 776, 1045
Fnu4HI	GCNGC	2 cut(s)	471, 633
FokI	GGATG	3 cut(s)	65, 424, 622
FriOI	GRGCYC	1 cut(s)	599
Fsp4HI	GCNGC	2 cut(s)	471, 633
FspBI	CTAG	3 cut(s)	197, 746, 896
GluI	GCNGC	2 cut(s)	471, 633
GsaI	CCCAGC	1 cut(s)	293
HaeIII	GGCC	2 cut(s)	365, 867
HapII	CCGG	1 cut(s)	111
HgaI	GACGC	1 cut(s)	587
Hin1II	CATG	8 cut(s)	154, 325, 364, 373, 496, 736, 780, 1049
HinfI	GANTC	3 cut(s)	65, 373, 825
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	1 cut(s)	333
Hpy166II	GTNNAC	1 cut(s)	311
Hpy188I	TCNGA	2 cut(s)	258, 843
Hpy188III	TCNNGA	4 cut(s)	493, 746, 877, 976
Hpy8I	GTNNAC	1 cut(s)	311
HpyAV	CCTTC	3 cut(s)	397, 586, 1018
HpyCH4III	ACNGT	3 cut(s)	315, 420, 814
HpyCH4V	TGCA	7 cut(s)	4, 215, 408, 485, 529, 554, 632
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 476
HpyF3I	CTNAG	4 cut(s)	280, 394, 847, 1056
Hsp92II	CATG	8 cut(s)	154, 325, 364, 373, 496, 736, 780, 1049
KpnI	GGTACC	2 cut(s)	444, 561
Kzo9I	GATC	3 cut(s)	258, 748, 1042
LguI	GCTCTTC	1 cut(s)	6
LmnI	GCTCC	5 cut(s)	296, 545, 602, 799, 968
Lsp1109I	GCAGC	2 cut(s)	457, 644
LweI	GCATC	2 cut(s)	644, 767
MaeI	CTAG	3 cut(s)	197, 746, 896
MalI	GATC	3 cut(s)	260, 750, 1044
MboI	GATC	3 cut(s)	258, 748, 1042
MboII	GAAGA	5 cut(s)	23, 32, 74, 753, 1042
MflI	RGATCY	1 cut(s)	258
MhlI	GDGCHC	1 cut(s)	599
MlsI	TGGCCA	1 cut(s)	365
MluCI	AATT	2 cut(s)	741, 1075
MluNI	TGGCCA	1 cut(s)	365
MlyI	GAGTC	1 cut(s)	367
MnlI	CCTC	6 cut(s)	92, 222, 287, 452, 509, 571
Mox20I	TGGCCA	1 cut(s)	365
MscI	TGGCCA	1 cut(s)	365
MseI	TTAA	1 cut(s)	30
Msp20I	TGGCCA	1 cut(s)	365
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	2 cut(s)	112, 438
MvaI	CCWGG	1 cut(s)	438
MwoI	GCNNNNNNNGC	2 cut(s)	212, 476
NciI	CCSGG	1 cut(s)	112
NcoI	CCATGG	1 cut(s)	360
NdeII	GATC	3 cut(s)	258, 748, 1042
NlaIII	CATG	8 cut(s)	154, 325, 364, 373, 496, 736, 780, 1049
NlaIV	GGNNCC	3 cut(s)	442, 559, 598
PagI	TCATGA	1 cut(s)	492
PciSI	GCTCTTC	1 cut(s)	6
PfeI	GAWTC	2 cut(s)	65, 825
PflMI	CCANNNNNTGG	1 cut(s)	1005
PkrI	GCNGC	2 cut(s)	472, 634
PleI	GAGTC	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	367
Psp6I	CCWGG	1 cut(s)	436
PspFI	CCCAGC	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	436
PspN4I	GGNNCC	3 cut(s)	442, 559, 598
PspPI	GGNCC	1 cut(s)	866
PstI	CTGCAG	1 cut(s)	556
PsuI	RGATCY	1 cut(s)	258
RsaI	GTAC	5 cut(s)	116, 310, 317, 442, 559
RsaNI	GTAC	5 cut(s)	115, 309, 316, 441, 558
SapI	GCTCTTC	1 cut(s)	6
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	2 cut(s)	471, 633
Sau3AI	GATC	3 cut(s)	258, 748, 1042
Sau96I	GGNCC	1 cut(s)	866
SchI	GAGTC	1 cut(s)	367
ScrFI	CCNGG	2 cut(s)	112, 438
SduI	GDGCHC	1 cut(s)	599
SfaNI	GCATC	2 cut(s)	644, 767
SfcI	CTRYAG	2 cut(s)	552, 573
Sse9I	AATT	2 cut(s)	741, 1075
SspI	AATATT	1 cut(s)	121
SspMI	CTAG	3 cut(s)	197, 746, 896
StyD4I	CCNGG	2 cut(s)	110, 436
StyI	CCWWGG	1 cut(s)	360
TaaI	ACNGT	3 cut(s)	315, 420, 814
TaqI	TCGA	3 cut(s)	60, 68, 380
TasI	AATT	2 cut(s)	741, 1075
TatI	WGTACW	2 cut(s)	308, 315
TfiI	GAWTC	2 cut(s)	65, 825
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	2 cut(s)	318, 723
TseI	GCWGC	2 cut(s)	470, 632
TspDTI	ATGAA	3 cut(s)	379, 606, 615
TspRI	CASTG	2 cut(s)	318, 723
Van91I	CCANNNNNTGG	1 cut(s)	1005
XagI	CCTNNNNNAGG	1 cut(s)	503
XapI	RAATTY	1 cut(s)	741
XbaI	TCTAGA	1 cut(s)	745
XcmI	CCANNNNNNNNNTGG	1 cut(s)	452
XspI	CTAG	3 cut(s)	197, 746, 896

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.