Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003830.1

Orthogroup ID

OG0003698

Physical Location & Seq

Genomic Coordinates Forward (+)

7347 .. 8473

Gene Structure 1127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003830.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

atgggattggaatatacttcaccagcttttacatctgccatggccaacatgactccatcaattaccttcatcttagctgttttgtgcaggatggaacagtttgatatttccaagcctggtacccaagccaagattggaggaactcttgctgcctttgctggtgcaacactcatgaccctctacaagggcgttgctgtaataacaatgcacaccaaaagctcccatcaaactgcaggcacctcaaaatcatctacagacgcagaatggttgaagggctcccttgtccttattgtttcatatagttcttttgcagcatcctatatcttacagaccttagtagtaataacaaaaggcccagttttcacgacagcttttagaccactagctaccattgttgttgctataatgggactactcattttaggagaagctatatacttgggaagtgttttgggagctttcttgatagttcttggtctgtatgcaactctttggggaaagaaaaaagagaaggagaagaagtcaatggatcatggtatatctcagcaagctattgacatcaatttagaaaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

191

Amino Acids

20.36

Weight (kDa)

9.3

Isoelectric Point (pI)

24.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003698)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g39211 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220
malus_domestica	MD09G1144300.v1.1
prunus_persica	Prupe.3G183600_v2.0.a1 Prupe.3G183600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0122881 RchiOBHm_Chr2g0153031 RchiOBHm_Chr2g0153061
rosa_laevigata	RLG00000020670 RLG00000020672 RLG00000020673
rosa_multiflora	Rmu_sc0000859.1_g000002 Rmu_sc0003830.1_g000003
rosa_roxburghii	Rroxscaffold_2G00095240 Rroxscaffold_2G00095260 Rroxscaffold_2G00121070
rosa_rugosa	Rorug02G0437000
rosa_samantha	Rh2AG499000 Rh2AG499200 Rh2BG309300 Rh2BG510400 Rh2BG510500 Rh2CG485400 Rh2CG485600 Rh2DG521900 Rh2DG522100
rosa_wichuraiana	Rw2G040950 Rw2G040970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	119
AccB1I	GGYRCC	2 cut(s)	119, 236
AclWI	GGATC	1 cut(s)	537
AcoI	YGGCCR	1 cut(s)	42
AfaI	GTAC	1 cut(s)	121
AfiI	CCNNNNNNNGG	1 cut(s)	184
AgsI	TTSAA	1 cut(s)	271
AjnI	CCWGG	1 cut(s)	115
AluBI	AGCT	8 cut(s)	26, 77, 219, 371, 386, 431, 458, 551
AluI	AGCT	8 cut(s)	26, 77, 219, 371, 386, 431, 458, 551
AlwI	GGATC	1 cut(s)	537
AoxI	GGCC	2 cut(s)	42, 352
ApeKI	GCWGC	2 cut(s)	149, 311
Asp718I	GGTACC	1 cut(s)	119
AspS9I	GGNCC	1 cut(s)	353
AsuHPI	GGTGA	1 cut(s)	12
BalI	TGGCCA	1 cut(s)	44
BanI	GGYRCC	2 cut(s)	119, 236
BanII	GRGCYC	1 cut(s)	278
BbvI	GCAGC	2 cut(s)	136, 323
BccI	CCATC	3 cut(s)	64, 85, 231
BciT130I	CCWGG	1 cut(s)	117
BfaI	CTAG	1 cut(s)	383
BfmI	CTRYAG	2 cut(s)	231, 252
BisI	GCNGC	2 cut(s)	150, 312
BlsI	GCNGC	2 cut(s)	151, 313
Bme1390I	CCNGG	1 cut(s)	117
BmgT120I	GGNCC	1 cut(s)	353
BmiI	GGNNCC	3 cut(s)	121, 238, 277
BmrFI	CCNGG	1 cut(s)	117
BmrI	ACTGGG	1 cut(s)	350
BmsI	GCATC	1 cut(s)	323
BmuI	ACTGGG	1 cut(s)	350
BsaJI	CCNNGG	1 cut(s)	39
BsaXI	ACNNNNNCTCC	2 cut(s)	506, 536
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
Bse1I	ACTGG	1 cut(s)	356
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	2 cut(s)	96, 314
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseMII	CTCAG	1 cut(s)	557
BseNI	ACTGG	1 cut(s)	356
BseXI	GCAGC	2 cut(s)	136, 323
BsgI	GTGCAG	1 cut(s)	106
BshFI	GGCC	2 cut(s)	44, 354
BshNI	GGYRCC	2 cut(s)	119, 236
BslFI	GGGAC	1 cut(s)	423
BslI	CCNNNNNNNGG	1 cut(s)	184
BsmFI	GGGAC	1 cut(s)	423
BsnI	GGCC	2 cut(s)	44, 354
Bsp1286I	GDGCHC	1 cut(s)	278
Bsp143I	GATC	1 cut(s)	529
Bsp19I	CCATGG	1 cut(s)	39
BspANI	GGCC	2 cut(s)	44, 354
BspCNI	CTCAG	1 cut(s)	556
BspHI	TCATGA	1 cut(s)	171
BspLI	GGNNCC	3 cut(s)	121, 238, 277
BspMAI	CTGCAG	1 cut(s)	235
BspPI	GGATC	1 cut(s)	537
BspT107I	GGYRCC	2 cut(s)	119, 236
BsrI	ACTGG	1 cut(s)	356
BssECI	CCNNGG	1 cut(s)	39
BssMI	GATC	1 cut(s)	529
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	99
BstC8I	GCNNGC	2 cut(s)	235, 549
BstDEI	CTNAG	3 cut(s)	73, 334, 543
BstDSI	CCRYGG	1 cut(s)	39
BstENI	CCTNNNNNAGG	1 cut(s)	182
BstF5I	GGATG	2 cut(s)	96, 314
BstKTI	GATC	1 cut(s)	532
BstMBI	GATC	1 cut(s)	529
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstNI	CCWGG	1 cut(s)	117
BstSCI	CCNGG	1 cut(s)	115
BstSFI	CTRYAG	2 cut(s)	231, 252
BstV1I	GCAGC	2 cut(s)	136, 323
BsuRI	GGCC	2 cut(s)	44, 354
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	2 cut(s)	96, 314
Cac8I	GCNNGC	2 cut(s)	235, 549
CciI	TCATGA	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	353
CseI	GACGC	1 cut(s)	266
Csp6I	GTAC	1 cut(s)	120
CviAII	CATG	4 cut(s)	40, 49, 172, 533
CviQI	GTAC	1 cut(s)	120
DdeI	CTNAG	3 cut(s)	73, 334, 543
DpnI	GATC	1 cut(s)	531
DpnII	GATC	1 cut(s)	529
EaeI	YGGCCR	1 cut(s)	42
Eco130I	CCWWGG	1 cut(s)	39
Eco24I	GRGCYC	1 cut(s)	278
EcoNI	CCTNNNNNAGG	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	278
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	4 cut(s)	43, 52, 175, 536
FaqI	GGGAC	1 cut(s)	423
FatI	CATG	4 cut(s)	39, 48, 171, 532
Fnu4HI	GCNGC	2 cut(s)	150, 312
FokI	GGATG	2 cut(s)	103, 301
FriOI	GRGCYC	1 cut(s)	278
Fsp4HI	GCNGC	2 cut(s)	150, 312
FspBI	CTAG	1 cut(s)	383
GluI	GCNGC	2 cut(s)	150, 312
HaeIII	GGCC	2 cut(s)	44, 354
HgaI	GACGC	1 cut(s)	266
Hin1II	CATG	4 cut(s)	43, 52, 175, 536
HinfI	GANTC	1 cut(s)	52
HphI	GGTGA	1 cut(s)	12
Hpy188III	TCNNGA	3 cut(s)	172, 364, 463
HpyAV	CCTTC	3 cut(s)	76, 265, 505
HpyCH4III	ACNGT	1 cut(s)	99
HpyCH4V	TGCA	6 cut(s)	87, 164, 208, 233, 311, 485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	3 cut(s)	73, 334, 543
Hsp92II	CATG	4 cut(s)	43, 52, 175, 536
KpnI	GGTACC	1 cut(s)	123
Kzo9I	GATC	1 cut(s)	529
LmnI	GCTCC	3 cut(s)	224, 281, 455
LpnPI	CCDG	7 cut(s)	36, 73, 102, 129, 144, 219, 369
Lsp1109I	GCAGC	2 cut(s)	136, 323
LweI	GCATC	1 cut(s)	323
MaeI	CTAG	1 cut(s)	383
MalI	GATC	1 cut(s)	531
MboI	GATC	1 cut(s)	529
MboII	GAAGA	1 cut(s)	529
MhlI	GDGCHC	1 cut(s)	278
MlsI	TGGCCA	1 cut(s)	44
MluCI	AATT	2 cut(s)	60, 562
MluNI	TGGCCA	1 cut(s)	44
MlyI	GAGTC	1 cut(s)	46
MnlI	CCTC	3 cut(s)	131, 188, 250
Mox20I	TGGCCA	1 cut(s)	44
MscI	TGGCCA	1 cut(s)	44
Msp20I	TGGCCA	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	117
MvaI	CCWGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	1 cut(s)	155
NcoI	CCATGG	1 cut(s)	39
NdeII	GATC	1 cut(s)	529
NlaIII	CATG	4 cut(s)	43, 52, 175, 536
NlaIV	GGNNCC	3 cut(s)	121, 238, 277
PagI	TCATGA	1 cut(s)	171
PkrI	GCNGC	2 cut(s)	151, 313
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	3 cut(s)	121, 238, 277
PspPI	GGNCC	1 cut(s)	353
PstI	CTGCAG	1 cut(s)	235
RsaI	GTAC	1 cut(s)	121
RsaNI	GTAC	1 cut(s)	120
SatI	GCNGC	2 cut(s)	150, 312
Sau3AI	GATC	1 cut(s)	529
Sau96I	GGNCC	1 cut(s)	353
SchI	GAGTC	1 cut(s)	46
ScrFI	CCNGG	1 cut(s)	117
SduI	GDGCHC	1 cut(s)	278
SfaNI	GCATC	1 cut(s)	323
SfcI	CTRYAG	2 cut(s)	231, 252
Sse9I	AATT	2 cut(s)	60, 562
SspMI	CTAG	1 cut(s)	383
StyD4I	CCNGG	1 cut(s)	115
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	1 cut(s)	99
TasI	AATT	2 cut(s)	60, 562
TseI	GCWGC	2 cut(s)	149, 311
TspDTI	ATGAA	2 cut(s)	58, 285
XagI	CCTNNNNNAGG	1 cut(s)	182
XcmI	CCANNNNNNNNNTGG	1 cut(s)	131
XspI	CTAG	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.