Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003698

Physical Location & Seq

Genomic Coordinates Forward (+)

16670835 .. 16672766

Gene Structure 1932 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00095260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGCAAAAAGTAATGCAGATGGAAGAGCAAGAAGAGAGAGTTAAAGGAAGCCGTAAGTGGGATAGAGTAATCGAAGAATCGAAACCCTACATCCTCTGTATATTTTCTAATATATGCTTTGCCGGGTTCAATATTGTCTCCAAAGTGGCTCTAGACAAAGGCATGAGCCGTTATGTGCTTGTGGTTTATGGACATGCTTTTGGAACTCTAGCAACTGCTCTTTTTGCATTTCTCTTTGAGAGGAAAAATGAGAGCAAAATCAATGTTCAGATCTTGCGAAATGTCTTTTTCTTAGGTCTGCTAAGAGTGTTAGGAAGTACACTGTACTACATGGGATTGGAATACACTTCACCAGCTTTTGCATCTGCCATGGCCAACATGATTCCATCGATTACCTTCATCTTAGCTGTTTTGTGCAGGATGGAACAGTTTGATATTTCCAAGCCTGGTACCCAAGCCAAGATTGGAGGAACTCTTGTTGCCTTTGCTGGTGCAACACTCATGACTCTCTACAAGGGCGTTGCTGTAATTACAATGCACGCCAAAAGCTCCTATCAAACTGCAGGTACCTCAAAATCATCTTCACACGCAGAATGGATCAAGGGCTCCCTTGTCCTTATTGTTTCATATAGTTCAGTTGCAGCATCCTATATCTTACAGACATCAACAATTAAAATGTATCCAGCACCAATCACTCTGACATCATTGACCTGCTTATCTGGGACACTGCTCTCAACAATCATGGCAGCAATTCTAGATCACAAAGCATCTTCTTGGAAGTTATCATGGAACACACTCCTTGCTCCTATGTATAGTGGAACTGTGATTTTCGGAGTCACATTTTATGTTCAGACCTTAGTAGTAAAAACAAAAGGCCCAGTTTTCACGGCAGCTTTTAGACCGCTAGCTACCATTGTTGTAGCTATAATGGGACTACTCATTTTAGGAGAAGCTGTATACTCGGGAAGTGTTTTGGGAGCTTTCTTGATAGTTCTTGGTCTGTATGCAACTCTTTGGGGAAAGAAAAAAGAGAAGGAGAAGAAGTCAATGGATCATGGTATATCTCAGCAAGCTATTGACATCAATTTAGAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

365

Amino Acids

39.95

Weight (kDa)

9.5

Isoelectric Point (pI)

35.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	29 - 168	7.2e-13	EamA-like transporter family
EamA	PF00892	201 - 338	4.6e-08	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003698)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g39211 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220
malus_domestica	MD09G1144300.v1.1
prunus_persica	Prupe.3G183600_v2.0.a1 Prupe.3G183600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0122881 RchiOBHm_Chr2g0153031 RchiOBHm_Chr2g0153061
rosa_laevigata	RLG00000020670 RLG00000020672 RLG00000020673
rosa_multiflora	Rmu_sc0000859.1_g000002 Rmu_sc0003830.1_g000003
rosa_roxburghii	Rroxscaffold_2G00095240 Rroxscaffold_2G00095260 Rroxscaffold_2G00121070
rosa_rugosa	Rorug02G0437000
rosa_samantha	Rh2AG499000 Rh2AG499200 Rh2BG309300 Rh2BG510400 Rh2BG510500 Rh2CG485400 Rh2CG485600 Rh2DG521900 Rh2DG522100
rosa_wichuraiana	Rw2G040950 Rw2G040970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	554, 719
Acc65I	GGTACC	2 cut(s)	449, 566
AccB1I	GGYRCC	2 cut(s)	449, 566
AccI	GTMKAC	1 cut(s)	957
AciI	CCGC	1 cut(s)	902
AclWI	GGATC	2 cut(s)	605, 1059
AcoI	YGGCCR	1 cut(s)	372
AfaI	GTAC	4 cut(s)	319, 326, 451, 568
AfiI	CCNNNNNNNGG	1 cut(s)	58
AgsI	TTSAA	1 cut(s)	130
AjnI	CCWGG	1 cut(s)	445
AluBI	AGCT	9 cut(s)	356, 407, 549, 893, 908, 923, 953, 980, 1073
AluI	AGCT	9 cut(s)	356, 407, 549, 893, 908, 923, 953, 980, 1073
Alw26I	GTCTC	1 cut(s)	142
AlwI	GGATC	2 cut(s)	605, 1059
Ama87I	CYCGRG	1 cut(s)	961
AoxI	GGCC	2 cut(s)	372, 874
ApeKI	GCWGC	3 cut(s)	641, 746, 890
Asp718I	GGTACC	2 cut(s)	449, 566
AspS9I	GGNCC	1 cut(s)	875
AsuC2I	CCSGG	1 cut(s)	124
AsuHPI	GGTGA	1 cut(s)	342
AsuNHI	GCTAGC	1 cut(s)	904
AvaI	CYCGRG	1 cut(s)	961
BalI	TGGCCA	1 cut(s)	374
BanI	GGYRCC	2 cut(s)	449, 566
BanII	GRGCYC	1 cut(s)	608
BbvI	GCAGC	3 cut(s)	653, 758, 902
BccI	CCATC	3 cut(s)	13, 394, 415
BceAI	ACGGC	3 cut(s)	36, 153, 903
BciT130I	CCWGG	1 cut(s)	447
BciVI	GTATCC	1 cut(s)	690
BcnI	CCSGG	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	142
BfaI	CTAG	4 cut(s)	152, 209, 755, 905
BfmI	CTRYAG	1 cut(s)	561
BfuAI	ACCTGC	2 cut(s)	554, 719
BfuI	GTATCC	1 cut(s)	690
BglII	AGATCT	1 cut(s)	270
BisI	GCNGC	3 cut(s)	642, 747, 891
BlsI	GCNGC	3 cut(s)	643, 748, 892
Bme1390I	CCNGG	2 cut(s)	124, 447
BmeT110I	CYCGRG	1 cut(s)	961
BmgT120I	GGNCC	1 cut(s)	875
BmiI	GGNNCC	3 cut(s)	451, 568, 607
BmrFI	CCNGG	2 cut(s)	124, 447
BmrI	ACTGGG	1 cut(s)	872
BmsI	GCATC	3 cut(s)	371, 653, 776
BmtI	GCTAGC	1 cut(s)	908
BmuI	ACTGGG	1 cut(s)	872
BpuMI	CCSGG	1 cut(s)	124
Bsa29I	ATCGAT	1 cut(s)	389
BsaJI	CCNNGG	1 cut(s)	369
BsaXI	ACNNNNNCTCC	4 cut(s)	939, 969, 1028, 1058
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	878
BseBI	CCWGG	1 cut(s)	447
BseCI	ATCGAT	1 cut(s)	389
BseDI	CCNNGG	1 cut(s)	369
BseGI	GGATG	3 cut(s)	90, 426, 644
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMII	CTCAG	1 cut(s)	1079
BseNI	ACTGG	1 cut(s)	878
BseXI	GCAGC	3 cut(s)	653, 758, 902
BsgI	GTGCAG	1 cut(s)	436
BshFI	GGCC	2 cut(s)	374, 876
BshNI	GGYRCC	2 cut(s)	449, 566
BshVI	ATCGAT	1 cut(s)	389
BsiHKCI	CYCGRG	1 cut(s)	961
BsiSI	CCGG	1 cut(s)	123
BslFI	GGGAC	2 cut(s)	736, 945
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmAI	GTCTC	1 cut(s)	142
BsmFI	GGGAC	2 cut(s)	736, 945
BsnI	GGCC	2 cut(s)	374, 876
BsoBI	CYCGRG	1 cut(s)	961
Bsp1286I	GDGCHC	1 cut(s)	608
Bsp143I	GATC	4 cut(s)	270, 597, 757, 1051
Bsp19I	CCATGG	1 cut(s)	369
BspACI	CCGC	1 cut(s)	902
BspANI	GGCC	2 cut(s)	374, 876
BspCNI	CTCAG	1 cut(s)	1078
BspDI	ATCGAT	1 cut(s)	389
BspHI	TCATGA	1 cut(s)	501
BspLI	GGNNCC	3 cut(s)	451, 568, 607
BspMAI	CTGCAG	1 cut(s)	565
BspMI	ACCTGC	2 cut(s)	554, 719
BspOI	GCTAGC	1 cut(s)	908
BspPI	GGATC	2 cut(s)	605, 1059
BspQI	GCTCTTC	1 cut(s)	18
BspT107I	GGYRCC	2 cut(s)	449, 566
BsrI	ACTGG	1 cut(s)	878
BssECI	CCNNGG	1 cut(s)	369
BssMI	GATC	4 cut(s)	270, 597, 757, 1051
BssNAI	GTATAC	1 cut(s)	958
BssT1I	CCWWGG	1 cut(s)	369
Bst1107I	GTATAC	1 cut(s)	958
Bst2UI	CCWGG	1 cut(s)	447
Bst4CI	ACNGT	3 cut(s)	324, 429, 823
Bst6I	CTCTTC	2 cut(s)	18, 27
BstC8I	GCNNGC	3 cut(s)	540, 906, 1071
BstDEI	CTNAG	5 cut(s)	292, 302, 403, 856, 1065
BstDSI	CCRYGG	1 cut(s)	369
BstF5I	GGATG	3 cut(s)	90, 426, 644
BstKTI	GATC	4 cut(s)	273, 600, 760, 1054
BstMAI	GTCTC	1 cut(s)	142
BstMBI	GATC	4 cut(s)	270, 597, 757, 1051
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstNI	CCWGG	1 cut(s)	447
BstNSI	RCATGY	1 cut(s)	197
BstSCI	CCNGG	2 cut(s)	122, 445
BstSFI	CTRYAG	1 cut(s)	561
BstV1I	GCAGC	3 cut(s)	653, 758, 902
BstX2I	RGATCY	1 cut(s)	270
BstYI	RGATCY	1 cut(s)	270
BstZ17I	GTATAC	1 cut(s)	958
Bsu15I	ATCGAT	1 cut(s)	389
BsuI	GTATCC	1 cut(s)	690
BsuRI	GGCC	2 cut(s)	374, 876
BsuTUI	ATCGAT	1 cut(s)	389
BtgI	CCRYGG	1 cut(s)	369
BtsCI	GGATG	3 cut(s)	90, 426, 644
BtsI	GCAGTG	1 cut(s)	725
BtsIMutI	CAGTG	2 cut(s)	320, 725
BveI	ACCTGC	2 cut(s)	554, 719
Cac8I	GCNNGC	3 cut(s)	540, 906, 1071
CciI	TCATGA	1 cut(s)	501
Cfr13I	GGNCC	1 cut(s)	875
ClaI	ATCGAT	1 cut(s)	389
Csp6I	GTAC	4 cut(s)	318, 325, 450, 567
CviAII	CATG	9 cut(s)	163, 194, 331, 370, 379, 502, 742, 786, 1055
CviQI	GTAC	4 cut(s)	318, 325, 450, 567
DdeI	CTNAG	5 cut(s)	292, 302, 403, 856, 1065
DpnI	GATC	4 cut(s)	272, 599, 759, 1053
DpnII	GATC	4 cut(s)	270, 597, 757, 1051
EaeI	YGGCCR	1 cut(s)	372
Eam1104I	CTCTTC	2 cut(s)	18, 27
EarI	CTCTTC	2 cut(s)	18, 27
Eco130I	CCWWGG	1 cut(s)	369
Eco24I	GRGCYC	1 cut(s)	608
Eco88I	CYCGRG	1 cut(s)	961
EcoRII	CCWGG	1 cut(s)	445
EcoT14I	CCWWGG	1 cut(s)	369
EcoT38I	GRGCYC	1 cut(s)	608
ErhI	CCWWGG	1 cut(s)	369
FaeI	CATG	9 cut(s)	166, 197, 334, 373, 382, 505, 745, 789, 1058
FaqI	GGGAC	2 cut(s)	736, 945
FatI	CATG	9 cut(s)	162, 193, 330, 369, 378, 501, 741, 785, 1054
FblI	GTMKAC	1 cut(s)	957
Fnu4HI	GCNGC	3 cut(s)	642, 747, 891
FokI	GGATG	3 cut(s)	77, 433, 631
FriOI	GRGCYC	1 cut(s)	608
Fsp4HI	GCNGC	3 cut(s)	642, 747, 891
FspBI	CTAG	4 cut(s)	152, 209, 755, 905
GluI	GCNGC	3 cut(s)	642, 747, 891
HaeIII	GGCC	2 cut(s)	374, 876
HapII	CCGG	1 cut(s)	123
Hin1II	CATG	9 cut(s)	166, 197, 334, 373, 382, 505, 745, 789, 1058
HinfI	GANTC	4 cut(s)	77, 382, 505, 834
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	1 cut(s)	342
Hpy166II	GTNNAC	2 cut(s)	320, 958
Hpy188I	TCNGA	4 cut(s)	270, 699, 833, 852
Hpy188III	TCNNGA	5 cut(s)	152, 502, 755, 963, 985
Hpy8I	GTNNAC	2 cut(s)	320, 958
HpyAV	CCTTC	2 cut(s)	406, 1027
HpyCH4III	ACNGT	3 cut(s)	324, 429, 823
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpyF3I	CTNAG	5 cut(s)	292, 302, 403, 856, 1065
Hsp92II	CATG	9 cut(s)	166, 197, 334, 373, 382, 505, 745, 789, 1058
KpnI	GGTACC	2 cut(s)	453, 570
Kzo9I	GATC	4 cut(s)	270, 597, 757, 1051
LguI	GCTCTTC	1 cut(s)	18
LmnI	GCTCC	4 cut(s)	554, 611, 808, 977
Lsp1109I	GCAGC	3 cut(s)	653, 758, 902
LweI	GCATC	3 cut(s)	371, 653, 776
MaeI	CTAG	4 cut(s)	152, 209, 755, 905
MaeIII	GTNAC	1 cut(s)	835
MalI	GATC	4 cut(s)	272, 599, 759, 1053
MboI	GATC	4 cut(s)	270, 597, 757, 1051
MboII	GAAGA	6 cut(s)	35, 44, 86, 573, 762, 1051
MflI	RGATCY	1 cut(s)	270
MhlI	GDGCHC	1 cut(s)	608
MlsI	TGGCCA	1 cut(s)	374
MluCI	AATT	4 cut(s)	528, 669, 750, 1084
MluNI	TGGCCA	1 cut(s)	374
MlyI	GAGTC	2 cut(s)	499, 843
MnlI	CCTC	4 cut(s)	104, 234, 461, 580
Mox20I	TGGCCA	1 cut(s)	374
MscI	TGGCCA	1 cut(s)	374
MseI	TTAA	2 cut(s)	42, 672
Msp20I	TGGCCA	1 cut(s)	374
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	2 cut(s)	124, 447
MvaI	CCWGG	1 cut(s)	447
MwoI	GCNNNNNNNGC	1 cut(s)	224
NciI	CCSGG	1 cut(s)	124
NcoI	CCATGG	1 cut(s)	369
NdeII	GATC	4 cut(s)	270, 597, 757, 1051
NheI	GCTAGC	1 cut(s)	904
NlaIII	CATG	9 cut(s)	166, 197, 334, 373, 382, 505, 745, 789, 1058
NlaIV	GGNNCC	3 cut(s)	451, 568, 607
NmuCI	GTSAC	1 cut(s)	835
NspI	RCATGY	1 cut(s)	197
PagI	TCATGA	1 cut(s)	501
PciSI	GCTCTTC	1 cut(s)	18
PfeI	GAWTC	2 cut(s)	77, 382
PkrI	GCNGC	3 cut(s)	643, 748, 892
PleI	GAGTC	2 cut(s)	499, 842
PpsI	GAGTC	2 cut(s)	499, 842
Psp6I	CCWGG	1 cut(s)	445
PspGI	CCWGG	1 cut(s)	445
PspN4I	GGNNCC	3 cut(s)	451, 568, 607
PspPI	GGNCC	1 cut(s)	875
PstI	CTGCAG	1 cut(s)	565
PsuI	RGATCY	1 cut(s)	270
RsaI	GTAC	4 cut(s)	319, 326, 451, 568
RsaNI	GTAC	4 cut(s)	318, 325, 450, 567
SapI	GCTCTTC	1 cut(s)	18
SaqAI	TTAA	2 cut(s)	42, 672
SatI	GCNGC	3 cut(s)	642, 747, 891
Sau3AI	GATC	4 cut(s)	270, 597, 757, 1051
Sau96I	GGNCC	1 cut(s)	875
SchI	GAGTC	2 cut(s)	499, 843
ScrFI	CCNGG	2 cut(s)	124, 447
SduI	GDGCHC	1 cut(s)	608
SfaNI	GCATC	3 cut(s)	371, 653, 776
SfcI	CTRYAG	1 cut(s)	561
Sse9I	AATT	4 cut(s)	528, 669, 750, 1084
SsiI	CCGC	1 cut(s)	902
SspI	AATATT	1 cut(s)	133
SspMI	CTAG	4 cut(s)	152, 209, 755, 905
StyD4I	CCNGG	2 cut(s)	122, 445
StyI	CCWWGG	1 cut(s)	369
TaaI	ACNGT	3 cut(s)	324, 429, 823
TaqI	TCGA	3 cut(s)	72, 80, 389
TasI	AATT	4 cut(s)	528, 669, 750, 1084
TatI	WGTACW	2 cut(s)	317, 324
TfiI	GAWTC	2 cut(s)	77, 382
Tru1I	TTAA	2 cut(s)	42, 672
Tru9I	TTAA	2 cut(s)	42, 672
TscAI	CASTG	2 cut(s)	327, 732
TseFI	GTSAC	1 cut(s)	835
TseI	GCWGC	3 cut(s)	641, 746, 890
Tsp45I	GTSAC	1 cut(s)	835
TspDTI	ATGAA	2 cut(s)	388, 615
TspRI	CASTG	2 cut(s)	327, 732
XbaI	TCTAGA	2 cut(s)	151, 754
XceI	RCATGY	1 cut(s)	197
XcmI	CCANNNNNNNNNTGG	1 cut(s)	461
XmiI	GTMKAC	1 cut(s)	957
XspI	CTAG	4 cut(s)	152, 209, 755, 905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.