Rh2BG510400

EamA-like transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0003698
Physical Location & Seq
Reverse (-)
71729545 .. 71733433
3889 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG510400.1

Sequence Viewer

Length: 1017 bp
ATGGAAGAGCAAGAAGAGAGAGTTAAAGGAAGCCGTAAGTGGGATAGAGTAATCGAAGAATCGAAACCCTACATCCTCTGTATATTTTCTAATATATGCTTTGCCGGGTTCAATATTGTCTCCAAAGTGGCTCTAGACAAAGGCATGAGCCGTTATGTCCTTGTGGTTTATGGACATGCTTTTGGAACTCTAGCAACTGCTCTTTTTGAATTTCTCTTTGAGAGGAAAAATGAGAGCAAAATCAATGTTCAGATCTTGCGAAATGTCTTTTTCTTAGGTCTGCTGAGAGTGTTAGGAAGTACACTGTACTACATGGGATTGGAATACACTTCACCAGCTTTTGCATCTGCCATGTCCAACATGATTCCATCGATTACCTTCATCTTAGCTGTTTTGTGCAGGATGGAACAGTTTGATATTTCCAAGCCTGGTACCCAAGCCAAGATTGGAGGAACTCTTGCTGCCTTTGCTGGTGCAACACCCATGACCCTCTACAAGGGCGTTGCTGTAATTACAATGCACACCAAAAGCTCCTATCAAACTGCAGGTACCTCAAAATCATCTACACACGCAGAATGGATCAAGGGCTCCCTTGTCCTTCTTGTTTCATATAGTTCAGTTGCAGCATCCTATATCTTACAGACATCAACAATTAAAATGTATCCAGCACCAATCACTCTTACATCATTGACCTGCTTATCTGGGACACTGCTCTCAACAATCATGGCAGCAATTCTAGATCACAAAGCATCTTCTTGGAAGTTATCATGGAACACACTTCTTGCTCCTATGTATAGTGGAACTGTGATTTTCGGAGTCACATTTTATGTTCAGACCTTAGTAGTAAAAACAAAAGGCCCAGTTTTCATGGCAGCTTTTAGACCACTAGCTACCATTGTTGTTGGTATAATGGGACTACTCATTTTAGGAGAAGCTATATACTCGGGAAGGGTCGTACCAAGTTATGGATTTCTGTATGCAAGATTTTGCAATCCGTCAAGCTTTATTTTTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

338

Amino Acids

37.12

Weight (kDa)

9.44

Isoelectric Point (pI)

40.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 23 - 141 2.1e-12 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 536, 701
Acc65I GGTACC 2 cut(s) 431, 548
AccB1I GGYRCC 2 cut(s) 431, 548
AccB7I CCANNNNNTGG 1 cut(s) 965
AclWI GGATC 1 cut(s) 587
AcsI RAATTY 1 cut(s) 209
AfaI GTAC 5 cut(s) 301, 308, 433, 550, 957
AfiI CCNNNNNNNGG 3 cut(s) 40, 496, 965
AgsI TTSAA 2 cut(s) 112, 209
AjnI CCWGG 1 cut(s) 427
AluBI AGCT 7 cut(s) 338, 389, 531, 875, 890, 935, 1002
AluI AGCT 7 cut(s) 338, 389, 531, 875, 890, 935, 1002
Alw26I GTCTC 1 cut(s) 124
AlwI GGATC 1 cut(s) 587
Ama87I CYCGRG 1 cut(s) 943
AoxI GGCC 1 cut(s) 856
ApeKI GCWGC 4 cut(s) 461, 623, 728, 872
ApoI RAATTY 1 cut(s) 209
Asp718I GGTACC 2 cut(s) 431, 548
AspS9I GGNCC 1 cut(s) 857
AsuC2I CCSGG 1 cut(s) 106
AsuHPI GGTGA 1 cut(s) 324
AvaI CYCGRG 1 cut(s) 943
BanI GGYRCC 2 cut(s) 431, 548
BanII GRGCYC 1 cut(s) 590
BbvI GCAGC 4 cut(s) 448, 635, 740, 884
BccI CCATC 2 cut(s) 376, 397
BceAI ACGGC 2 cut(s) 18, 135
BciT130I CCWGG 1 cut(s) 429
BciVI GTATCC 1 cut(s) 672
BcnI CCSGG 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 124
BfaI CTAG 4 cut(s) 134, 191, 737, 887
BfmI CTRYAG 1 cut(s) 543
BfuAI ACCTGC 2 cut(s) 536, 701
BfuI GTATCC 1 cut(s) 672
BglII AGATCT 1 cut(s) 252
BisI GCNGC 4 cut(s) 462, 624, 729, 873
BlsI GCNGC 4 cut(s) 463, 625, 730, 874
Bme1390I CCNGG 2 cut(s) 106, 429
BmeT110I CYCGRG 1 cut(s) 943
BmgT120I GGNCC 1 cut(s) 857
BmiI GGNNCC 3 cut(s) 433, 550, 589
BmrFI CCNGG 2 cut(s) 106, 429
BmrI ACTGGG 1 cut(s) 854
BmsI GCATC 3 cut(s) 353, 635, 758
BmuI ACTGGG 1 cut(s) 854
BpuMI CCSGG 1 cut(s) 106
Bsa29I ATCGAT 1 cut(s) 371
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 496, 965
Bse1I ACTGG 1 cut(s) 860
BseBI CCWGG 1 cut(s) 429
BseCI ATCGAT 1 cut(s) 371
BseGI GGATG 3 cut(s) 72, 408, 626
BseLI CCNNNNNNNGG 3 cut(s) 40, 496, 965
BseMII CTCAG 1 cut(s) 275
BseNI ACTGG 1 cut(s) 860
BseXI GCAGC 4 cut(s) 448, 635, 740, 884
BsgI GTGCAG 1 cut(s) 418
BshFI GGCC 1 cut(s) 858
BshNI GGYRCC 2 cut(s) 431, 548
BshVI ATCGAT 1 cut(s) 371
BsiHKCI CYCGRG 1 cut(s) 943
BsiSI CCGG 1 cut(s) 105
BslFI GGGAC 2 cut(s) 718, 927
BslI CCNNNNNNNGG 3 cut(s) 40, 496, 965
BsmAI GTCTC 1 cut(s) 124
BsmFI GGGAC 2 cut(s) 718, 927
BsnI GGCC 1 cut(s) 858
BsoBI CYCGRG 1 cut(s) 943
Bsp1286I GDGCHC 1 cut(s) 590
Bsp143I GATC 3 cut(s) 252, 579, 739
BspANI GGCC 1 cut(s) 858
BspCNI CTCAG 1 cut(s) 276
BspDI ATCGAT 1 cut(s) 371
BspLI GGNNCC 3 cut(s) 433, 550, 589
BspMAI CTGCAG 1 cut(s) 547
BspMI ACCTGC 2 cut(s) 536, 701
BspPI GGATC 1 cut(s) 587
BspT107I GGYRCC 2 cut(s) 431, 548
BsrI ACTGG 1 cut(s) 860
BssMI GATC 3 cut(s) 252, 579, 739
Bst2UI CCWGG 1 cut(s) 429
Bst4CI ACNGT 3 cut(s) 306, 411, 805
Bst6I CTCTTC 1 cut(s) 9
BstDEI CTNAG 4 cut(s) 274, 284, 385, 838
BstENI CCTNNNNNAGG 1 cut(s) 494
BstF5I GGATG 3 cut(s) 72, 408, 626
BstKTI GATC 3 cut(s) 255, 582, 742
BstMAI GTCTC 1 cut(s) 124
BstMBI GATC 3 cut(s) 252, 579, 739
BstMWI GCNNNNNNNGC 1 cut(s) 467
BstNI CCWGG 1 cut(s) 429
BstNSI RCATGY 1 cut(s) 179
BstSCI CCNGG 2 cut(s) 104, 427
BstSFI CTRYAG 1 cut(s) 543
BstV1I GCAGC 4 cut(s) 448, 635, 740, 884
BstX2I RGATCY 1 cut(s) 252
BstYI RGATCY 1 cut(s) 252
Bsu15I ATCGAT 1 cut(s) 371
BsuI GTATCC 1 cut(s) 672
BsuRI GGCC 1 cut(s) 858
BsuTUI ATCGAT 1 cut(s) 371
BtsCI GGATG 3 cut(s) 72, 408, 626
BtsI GCAGTG 1 cut(s) 707
BtsIMutI CAGTG 2 cut(s) 302, 707
BveI ACCTGC 2 cut(s) 536, 701
Cfr13I GGNCC 1 cut(s) 857
ClaI ATCGAT 1 cut(s) 371
Csp6I GTAC 5 cut(s) 300, 307, 432, 549, 956
CviAII CATG 9 cut(s) 145, 176, 313, 352, 361, 484, 724, 768, 868
CviQI GTAC 5 cut(s) 300, 307, 432, 549, 956
DdeI CTNAG 4 cut(s) 274, 284, 385, 838
DpnI GATC 3 cut(s) 254, 581, 741
DpnII GATC 3 cut(s) 252, 579, 739
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
Eco24I GRGCYC 1 cut(s) 590
Eco88I CYCGRG 1 cut(s) 943
EcoNI CCTNNNNNAGG 1 cut(s) 494
EcoRII CCWGG 1 cut(s) 427
EcoT38I GRGCYC 1 cut(s) 590
FaeI CATG 9 cut(s) 148, 179, 316, 355, 364, 487, 727, 771, 871
FaqI GGGAC 2 cut(s) 718, 927
FatI CATG 9 cut(s) 144, 175, 312, 351, 360, 483, 723, 767, 867
Fnu4HI GCNGC 4 cut(s) 462, 624, 729, 873
FokI GGATG 3 cut(s) 59, 415, 613
FriOI GRGCYC 1 cut(s) 590
Fsp4HI GCNGC 4 cut(s) 462, 624, 729, 873
FspBI CTAG 4 cut(s) 134, 191, 737, 887
GluI GCNGC 4 cut(s) 462, 624, 729, 873
HaeIII GGCC 1 cut(s) 858
HapII CCGG 1 cut(s) 105
Hin1II CATG 9 cut(s) 148, 179, 316, 355, 364, 487, 727, 771, 871
HindIII AAGCTT 1 cut(s) 1000
HinfI GANTC 3 cut(s) 59, 364, 816
HpaII CCGG 1 cut(s) 105
HphI GGTGA 1 cut(s) 324
Hpy166II GTNNAC 1 cut(s) 302
Hpy188I TCNGA 3 cut(s) 252, 815, 834
Hpy188III TCNNGA 3 cut(s) 134, 737, 945
Hpy8I GTNNAC 1 cut(s) 302
HpyAV CCTTC 3 cut(s) 388, 608, 942
HpyCH4III ACNGT 3 cut(s) 306, 411, 805
HpyCH4V TGCA 8 cut(s) 344, 399, 476, 520, 545, 623, 980, 990
HpyF10VI GCNNNNNNNGC 1 cut(s) 467
HpyF3I CTNAG 4 cut(s) 274, 284, 385, 838
Hsp92II CATG 9 cut(s) 148, 179, 316, 355, 364, 487, 727, 771, 871
KpnI GGTACC 2 cut(s) 435, 552
Kzo9I GATC 3 cut(s) 252, 579, 739
LmnI GCTCC 3 cut(s) 536, 593, 790
Lsp1109I GCAGC 4 cut(s) 448, 635, 740, 884
LweI GCATC 3 cut(s) 353, 635, 758
MaeI CTAG 4 cut(s) 134, 191, 737, 887
MaeIII GTNAC 1 cut(s) 817
MalI GATC 3 cut(s) 254, 581, 741
MboI GATC 3 cut(s) 252, 579, 739
MboII GAAGA 4 cut(s) 17, 26, 68, 744
MflI RGATCY 1 cut(s) 252
MhlI GDGCHC 1 cut(s) 590
MluCI AATT 4 cut(s) 209, 510, 651, 732
MlyI GAGTC 1 cut(s) 825
MmeI TCCRAC 1 cut(s) 381
MnlI CCTC 5 cut(s) 86, 216, 443, 500, 562
MseI TTAA 3 cut(s) 24, 654, 1015
MspI CCGG 1 cut(s) 105
MspR9I CCNGG 2 cut(s) 106, 429
MvaI CCWGG 1 cut(s) 429
MwoI GCNNNNNNNGC 1 cut(s) 467
NciI CCSGG 1 cut(s) 106
NdeII GATC 3 cut(s) 252, 579, 739
NlaIII CATG 9 cut(s) 148, 179, 316, 355, 364, 487, 727, 771, 871
NlaIV GGNNCC 3 cut(s) 433, 550, 589
NmuCI GTSAC 1 cut(s) 817
NspI RCATGY 1 cut(s) 179
PfeI GAWTC 2 cut(s) 59, 364
PflMI CCANNNNNTGG 1 cut(s) 965
PkrI GCNGC 4 cut(s) 463, 625, 730, 874
PleI GAGTC 1 cut(s) 824
PpsI GAGTC 1 cut(s) 824
Psp6I CCWGG 1 cut(s) 427
PspGI CCWGG 1 cut(s) 427
PspN4I GGNNCC 3 cut(s) 433, 550, 589
PspPI GGNCC 1 cut(s) 857
PstI CTGCAG 1 cut(s) 547
PsuI RGATCY 1 cut(s) 252
RsaI GTAC 5 cut(s) 301, 308, 433, 550, 957
RsaNI GTAC 5 cut(s) 300, 307, 432, 549, 956
SaqAI TTAA 3 cut(s) 24, 654, 1015
SatI GCNGC 4 cut(s) 462, 624, 729, 873
Sau3AI GATC 3 cut(s) 252, 579, 739
Sau96I GGNCC 1 cut(s) 857
SchI GAGTC 1 cut(s) 825
ScrFI CCNGG 2 cut(s) 106, 429
SduI GDGCHC 1 cut(s) 590
SfaNI GCATC 3 cut(s) 353, 635, 758
SfcI CTRYAG 1 cut(s) 543
Sse9I AATT 4 cut(s) 209, 510, 651, 732
SspI AATATT 1 cut(s) 115
SspMI CTAG 4 cut(s) 134, 191, 737, 887
StyD4I CCNGG 2 cut(s) 104, 427
TaaI ACNGT 3 cut(s) 306, 411, 805
TaqI TCGA 3 cut(s) 54, 62, 371
TasI AATT 4 cut(s) 209, 510, 651, 732
TatI WGTACW 2 cut(s) 299, 306
TfiI GAWTC 2 cut(s) 59, 364
Tru1I TTAA 3 cut(s) 24, 654, 1015
Tru9I TTAA 3 cut(s) 24, 654, 1015
TscAI CASTG 2 cut(s) 309, 714
TseFI GTSAC 1 cut(s) 817
TseI GCWGC 4 cut(s) 461, 623, 728, 872
Tsp45I GTSAC 1 cut(s) 817
TspDTI ATGAA 3 cut(s) 370, 597, 856
TspGWI ACGGA 1 cut(s) 984
TspRI CASTG 2 cut(s) 309, 714
Van91I CCANNNNNTGG 1 cut(s) 965
XagI CCTNNNNNAGG 1 cut(s) 494
XapI RAATTY 1 cut(s) 209
XbaI TCTAGA 2 cut(s) 133, 736
XceI RCATGY 1 cut(s) 179
XcmI CCANNNNNNNNNTGG 1 cut(s) 443
XspI CTAG 4 cut(s) 134, 191, 737, 887
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.