Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000859.1

Orthogroup ID

OG0003698

Physical Location & Seq

Genomic Coordinates Reverse (-)

22888 .. 24004

Gene Structure 1117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000859.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

atgggattggaatacacttcaccagcttttgcatctgccatgggcaacatgattccatcgattaccttcatcttagctgttttgtgcaggatggaacagttcgatatttcgaagcttggtacccaagccaagattgggggaactcttgctgcctttgctggtgcaacactcatgaccctctataagggtgttgctgtaattacaacgcacaccaaaagctcccatcaaactgcagctacctcaaaatcatctacagacgcagaatggataaagggctcccttgtccttattgtttcatttagttccttagcagcattctatatcttacagacatcaacaattaaaatgtatccagcaccaatcactcttacatcattgacctgcttatctgggacactgctctcaacaatcatggcagcaattctagatcacaaagcatcttcttggaagttatcatggaacacacttcttgctcctatgtatagtggaattgtgattttcggaatcacagtttatgttcagaccttagtagtacgaacaaaaggcccagttttcatgacagcttttagaccactagctaccattgttgtagctataatgggactactcattttaggagaagcaatatacttgggaagtgttttgggagctttcttgatagttcttggtctgtacgcaactctttggggaaagaaaaaagagaaggagaagaagtcaatggatcatggtgtatctcagcaagctattgagatcaatctagaaaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

255

Amino Acids

27.33

Weight (kDa)

9.45

Isoelectric Point (pI)

28.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003698)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g39211 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220
malus_domestica	MD09G1144300.v1.1
prunus_persica	Prupe.3G183600_v2.0.a1 Prupe.3G183600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0122881 RchiOBHm_Chr2g0153031 RchiOBHm_Chr2g0153061
rosa_laevigata	RLG00000020670 RLG00000020672 RLG00000020673
rosa_multiflora	Rmu_sc0000859.1_g000002 Rmu_sc0003830.1_g000003
rosa_roxburghii	Rroxscaffold_2G00095240 Rroxscaffold_2G00095260 Rroxscaffold_2G00121070
rosa_rugosa	Rorug02G0437000
rosa_samantha	Rh2AG499000 Rh2AG499200 Rh2BG309300 Rh2BG510400 Rh2BG510500 Rh2CG485400 Rh2CG485600 Rh2DG521900 Rh2DG522100
rosa_wichuraiana	Rw2G040950 Rw2G040970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	389
Acc65I	GGTACC	1 cut(s)	119
AccB1I	GGYRCC	1 cut(s)	119
AclWI	GGATC	1 cut(s)	729
AfaI	GTAC	3 cut(s)	121, 534, 674
AfiI	CCNNNNNNNGG	2 cut(s)	135, 184
AlwI	GGATC	1 cut(s)	729
AoxI	GGCC	1 cut(s)	544
ApeKI	GCWGC	4 cut(s)	149, 233, 311, 416
Asp718I	GGTACC	1 cut(s)	119
AspS9I	GGNCC	1 cut(s)	545
AsuHPI	GGTGA	1 cut(s)	12
AsuII	TTCGAA	1 cut(s)	110
BanI	GGYRCC	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	278
BbvI	GCAGC	4 cut(s)	136, 245, 323, 428
BccI	CCATC	3 cut(s)	64, 85, 231
BciVI	GTATCC	1 cut(s)	360
BfaI	CTAG	3 cut(s)	425, 575, 758
BfmI	CTRYAG	2 cut(s)	231, 252
BfuAI	ACCTGC	1 cut(s)	389
BfuI	GTATCC	1 cut(s)	360
BisI	GCNGC	4 cut(s)	150, 234, 312, 417
BlsI	GCNGC	4 cut(s)	151, 235, 313, 418
BmgT120I	GGNCC	1 cut(s)	545
BmiI	GGNNCC	2 cut(s)	121, 277
BmrI	ACTGGG	1 cut(s)	542
BmsI	GCATC	2 cut(s)	41, 446
BmuI	ACTGGG	1 cut(s)	542
Bpu10I	CCTNAGC	1 cut(s)	307
Bpu14I	TTCGAA	1 cut(s)	110
Bsa29I	ATCGAT	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	39
BsaXI	ACNNNNNCTCC	2 cut(s)	698, 728
Bsc4I	CCNNNNNNNGG	2 cut(s)	135, 184
Bse1I	ACTGG	1 cut(s)	548
BseCI	ATCGAT	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	1 cut(s)	96
BseLI	CCNNNNNNNGG	2 cut(s)	135, 184
BseMII	CTCAG	1 cut(s)	749
BseNI	ACTGG	1 cut(s)	548
BseXI	GCAGC	4 cut(s)	136, 245, 323, 428
BsgI	GTGCAG	1 cut(s)	106
BshFI	GGCC	1 cut(s)	546
BshNI	GGYRCC	1 cut(s)	119
BshVI	ATCGAT	1 cut(s)	59
BslFI	GGGAC	2 cut(s)	406, 615
BslI	CCNNNNNNNGG	2 cut(s)	135, 184
BsmFI	GGGAC	2 cut(s)	406, 615
BsmI	GAATGC	1 cut(s)	314
BsnI	GGCC	1 cut(s)	546
Bsp119I	TTCGAA	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	278
Bsp143I	GATC	3 cut(s)	427, 721, 750
Bsp19I	CCATGG	1 cut(s)	39
BspANI	GGCC	1 cut(s)	546
BspCNI	CTCAG	1 cut(s)	748
BspDI	ATCGAT	1 cut(s)	59
BspHI	TCATGA	2 cut(s)	171, 555
BspLI	GGNNCC	2 cut(s)	121, 277
BspMAI	CTGCAG	1 cut(s)	235
BspMI	ACCTGC	1 cut(s)	389
BspPI	GGATC	1 cut(s)	729
BspT104I	TTCGAA	1 cut(s)	110
BspT107I	GGYRCC	1 cut(s)	119
BsrI	ACTGG	1 cut(s)	548
BssECI	CCNNGG	1 cut(s)	39
BssMI	GATC	3 cut(s)	427, 721, 750
BssT1I	CCWWGG	1 cut(s)	39
Bst4CI	ACNGT	2 cut(s)	99, 511
BstBI	TTCGAA	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	741
BstDEI	CTNAG	4 cut(s)	73, 307, 526, 735
BstDSI	CCRYGG	1 cut(s)	39
BstENI	CCTNNNNNAGG	1 cut(s)	182
BstF5I	GGATG	1 cut(s)	96
BstKTI	GATC	3 cut(s)	430, 724, 753
BstMBI	GATC	3 cut(s)	427, 721, 750
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstSFI	CTRYAG	2 cut(s)	231, 252
BstV1I	GCAGC	4 cut(s)	136, 245, 323, 428
Bsu15I	ATCGAT	1 cut(s)	59
BsuI	GTATCC	1 cut(s)	360
BsuRI	GGCC	1 cut(s)	546
BsuTUI	ATCGAT	1 cut(s)	59
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	96
BtsI	GCAGTG	1 cut(s)	395
BtsIMutI	CAGTG	1 cut(s)	395
BveI	ACCTGC	1 cut(s)	389
Cac8I	GCNNGC	1 cut(s)	741
CciI	TCATGA	2 cut(s)	171, 555
Cfr13I	GGNCC	1 cut(s)	545
ClaI	ATCGAT	1 cut(s)	59
CseI	GACGC	1 cut(s)	266
Csp6I	GTAC	3 cut(s)	120, 533, 673
CviAII	CATG	7 cut(s)	40, 49, 172, 412, 456, 556, 725
CviQI	GTAC	3 cut(s)	120, 533, 673
DdeI	CTNAG	4 cut(s)	73, 307, 526, 735
DpnI	GATC	3 cut(s)	429, 723, 752
DpnII	GATC	3 cut(s)	427, 721, 750
Eco130I	CCWWGG	1 cut(s)	39
Eco24I	GRGCYC	1 cut(s)	278
EcoNI	CCTNNNNNAGG	1 cut(s)	182
EcoT14I	CCWWGG	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	278
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	7 cut(s)	43, 52, 175, 415, 459, 559, 728
FaqI	GGGAC	2 cut(s)	406, 615
FatI	CATG	7 cut(s)	39, 48, 171, 411, 455, 555, 724
Fnu4HI	GCNGC	4 cut(s)	150, 234, 312, 417
FokI	GGATG	1 cut(s)	103
FriOI	GRGCYC	1 cut(s)	278
Fsp4HI	GCNGC	4 cut(s)	150, 234, 312, 417
FspBI	CTAG	3 cut(s)	425, 575, 758
GluI	GCNGC	4 cut(s)	150, 234, 312, 417
HaeIII	GGCC	1 cut(s)	546
HgaI	GACGC	1 cut(s)	266
Hin1II	CATG	7 cut(s)	43, 52, 175, 415, 459, 559, 728
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	2 cut(s)	52, 504
HphI	GGTGA	1 cut(s)	12
Hpy188I	TCNGA	2 cut(s)	503, 522
Hpy188III	TCNNGA	5 cut(s)	172, 425, 556, 655, 758
HpyAV	CCTTC	2 cut(s)	76, 697
HpyCH4III	ACNGT	2 cut(s)	99, 511
HpyCH4V	TGCA	4 cut(s)	32, 87, 164, 233
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	4 cut(s)	73, 307, 526, 735
Hsp92II	CATG	7 cut(s)	43, 52, 175, 415, 459, 559, 728
KpnI	GGTACC	1 cut(s)	123
Kzo9I	GATC	3 cut(s)	427, 721, 750
LmnI	GCTCC	4 cut(s)	224, 281, 478, 647
LpnPI	CCDG	7 cut(s)	36, 73, 144, 366, 375, 394, 561
Lsp1109I	GCAGC	4 cut(s)	136, 245, 323, 428
LweI	GCATC	2 cut(s)	41, 446
MaeI	CTAG	3 cut(s)	425, 575, 758
MalI	GATC	3 cut(s)	429, 723, 752
MboI	GATC	3 cut(s)	427, 721, 750
MboII	GAAGA	2 cut(s)	432, 721
MhlI	GDGCHC	1 cut(s)	278
MluCI	AATT	4 cut(s)	198, 339, 420, 489
MnlI	CCTC	2 cut(s)	188, 250
MseI	TTAA	1 cut(s)	342
Mva1269I	GAATGC	1 cut(s)	314
MwoI	GCNNNNNNNGC	1 cut(s)	155
NcoI	CCATGG	1 cut(s)	39
NdeII	GATC	3 cut(s)	427, 721, 750
NlaIII	CATG	7 cut(s)	43, 52, 175, 415, 459, 559, 728
NlaIV	GGNNCC	2 cut(s)	121, 277
NspV	TTCGAA	1 cut(s)	110
PagI	TCATGA	2 cut(s)	171, 555
PctI	GAATGC	1 cut(s)	314
PfeI	GAWTC	2 cut(s)	52, 504
PkrI	GCNGC	4 cut(s)	151, 235, 313, 418
PspN4I	GGNNCC	2 cut(s)	121, 277
PspPI	GGNCC	1 cut(s)	545
PstI	CTGCAG	1 cut(s)	235
RsaI	GTAC	3 cut(s)	121, 534, 674
RsaNI	GTAC	3 cut(s)	120, 533, 673
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	4 cut(s)	150, 234, 312, 417
Sau3AI	GATC	3 cut(s)	427, 721, 750
Sau96I	GGNCC	1 cut(s)	545
SduI	GDGCHC	1 cut(s)	278
SfaNI	GCATC	2 cut(s)	41, 446
SfcI	CTRYAG	2 cut(s)	231, 252
SfuI	TTCGAA	1 cut(s)	110
Sse9I	AATT	4 cut(s)	198, 339, 420, 489
SspMI	CTAG	3 cut(s)	425, 575, 758
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	2 cut(s)	99, 511
TaqI	TCGA	3 cut(s)	59, 102, 110
TasI	AATT	4 cut(s)	198, 339, 420, 489
TfiI	GAWTC	2 cut(s)	52, 504
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	1 cut(s)	402
TseI	GCWGC	4 cut(s)	149, 233, 311, 416
TspDTI	ATGAA	3 cut(s)	58, 285, 544
TspRI	CASTG	1 cut(s)	402
XagI	CCTNNNNNAGG	1 cut(s)	182
XbaI	TCTAGA	2 cut(s)	424, 757
XcmI	CCANNNNNNNNNTGG	1 cut(s)	131
XspI	CTAG	3 cut(s)	425, 575, 758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.