Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003698

Physical Location & Seq

Genomic Coordinates Reverse (-)

19890340 .. 19892321

Gene Structure 1982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G183600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGAAAATGGAAATGCAAACGGAAGAGCAGGACGACAGGGCGAAAGGAGGAAGCAGTAAGAGGGAGGTGTCAAAACCTTACATTCTTTGTATATTTGCTAACATCTGCTTTGCTGGGTTCCCTGTTGTCATTAAGGTCTCTTTAGACAAAGGCATGAGCTGTTATGTGCTTGTGGTTTATGGCCATGCTTTTGGAACGCTAGCAACTGCTCTTCTTGCACTTCTTTTTGAGAGGAAAAATGAGAGCAAAATCAGTGTTCCGATAATTCGAAATGTCTTCTTCTTGGGCCTGCTGGGAGGAGTGTTGGGAAGAACATTGAATTACATGGGACTGGAATACACTTCACCAGCTATTGCAGCTGCTATGAGCAACCTTATTCCATGTATTACCTTTATCATAGCAGTTGTGTGCAGGATGGAAAAATTTGACATTACAAAGCTTGGTACCCAAGCCAAGATTGGGGGAACTCTTATCTCCTTTGCCGGTGCAGCACTGATGACGCTATACAAGGGAATTGCTGTGATTTCAATGCACACTCAAGCCTCCCATCAATCTGCTACTTCCAAATCATCCGTAGACAGAGACTGGATAAAGGGCTCCCTTTTTCTTCTTGTTTCATATATTTCCTCATCAGCATTCTACATCTTACAGACAATAACAATCGAAATGTATCCTGCACCTATTACTCTTACATCGATAACGTGCTTATCGGGGACTCTACTCACGGCGATCATGGCAGCAATTCTAGATCATGAAGCATCCTCTTGGAAGCTGTCATGGGACAGTACACTTCTTGCTCCTTTGTACAGTGGAGTTTTGATTTTTGGAATCACCATTTATGTGCAAACATTAGTTGTAAAAACAAGAGGCCCAGTTTTCATGACAGCATTTAGACCACTATCCACAATTGTTGCAGCTATAATGGGGCTATTCGTTTTAAGAGAAGCTATATACTTGGGAAGTATTTTAGGAGCTTCCTTGATTATTGTTGGTTTGTCTACAACTCTCTGGGGAGAGAACAAAGAGAAAGAGAAGAACCCATTGAAGGATGCTATATCTCAAGAAGTTTGTGAGATCCAATTAGAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

364

Amino Acids

39.45

Weight (kDa)

8.57

Isoelectric Point (pI)

35.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003698)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g39211 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220 FvH4_6g39220
malus_domestica	MD09G1144300.v1.1
prunus_persica	Prupe.3G183600_v2.0.a1 Prupe.3G183600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0122881 RchiOBHm_Chr2g0153031 RchiOBHm_Chr2g0153061
rosa_laevigata	RLG00000020670 RLG00000020672 RLG00000020673
rosa_multiflora	Rmu_sc0000859.1_g000002 Rmu_sc0003830.1_g000003
rosa_roxburghii	Rroxscaffold_2G00095240 Rroxscaffold_2G00095260 Rroxscaffold_2G00121070
rosa_rugosa	Rorug02G0437000
rosa_samantha	Rh2AG499000 Rh2AG499200 Rh2BG309300 Rh2BG510400 Rh2BG510500 Rh2CG485400 Rh2CG485600 Rh2DG521900 Rh2DG522100
rosa_wichuraiana	Rw2G040950 Rw2G040970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	443
AccB1I	GGYRCC	1 cut(s)	443
AccI	GTMKAC	2 cut(s)	576, 998
AclWI	GGATC	1 cut(s)	1069
AcoI	YGGCCR	1 cut(s)	181
AcsI	RAATTY	1 cut(s)	422
AfaI	GTAC	3 cut(s)	445, 787, 806
AfiI	CCNNNNNNNGG	2 cut(s)	459, 1045
AgsI	TTSAA	3 cut(s)	319, 528, 1045
AluBI	AGCT	8 cut(s)	159, 350, 359, 439, 772, 917, 947, 974
AluI	AGCT	8 cut(s)	159, 350, 359, 439, 772, 917, 947, 974
Alw26I	GTCTC	2 cut(s)	142, 576
AlwI	GGATC	1 cut(s)	1069
AlwNI	CAGNNNCTG	1 cut(s)	585
AoxI	GGCC	3 cut(s)	181, 286, 868
ApeKI	GCWGC	5 cut(s)	356, 359, 488, 737, 914
ApoI	RAATTY	1 cut(s)	422
Asp718I	GGTACC	1 cut(s)	443
AspS9I	GGNCC	2 cut(s)	286, 869
AsuHPI	GGTGA	2 cut(s)	336, 823
AsuII	TTCGAA	1 cut(s)	268
AsuNHI	GCTAGC	1 cut(s)	199
BalI	TGGCCA	1 cut(s)	183
BanI	GGYRCC	1 cut(s)	443
BanII	GRGCYC	1 cut(s)	599
BbsI	GAAGAC	1 cut(s)	268
BbvI	GCAGC	5 cut(s)	346, 368, 500, 749, 926
BccI	CCATC	2 cut(s)	409, 555
BceAI	ACGGC	1 cut(s)	741
BciVI	GTATCC	1 cut(s)	681
BcoDI	GTCTC	2 cut(s)	142, 576
BfaI	CTAG	2 cut(s)	200, 746
BfuI	GTATCC	1 cut(s)	681
BisI	GCNGC	5 cut(s)	357, 360, 489, 738, 915
BlsI	GCNGC	5 cut(s)	358, 361, 490, 739, 916
BmgT120I	GGNCC	2 cut(s)	286, 869
BmiI	GGNNCC	3 cut(s)	119, 445, 598
BmrI	ACTGGG	1 cut(s)	866
BmsI	GCATC	2 cut(s)	767, 1039
BmtI	GCTAGC	1 cut(s)	203
BmuI	ACTGGG	1 cut(s)	866
BpiI	GAAGAC	1 cut(s)	268
Bpu14I	TTCGAA	1 cut(s)	268
BpuEI	CTTGAG	2 cut(s)	522, 1044
Bsa29I	ATCGAT	1 cut(s)	695
BsaI	GGTCTC	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	2 cut(s)	459, 1045
Bse118I	RCCGGY	1 cut(s)	482
Bse1I	ACTGG	3 cut(s)	336, 590, 872
BseCI	ATCGAT	1 cut(s)	695
BseGI	GGATG	4 cut(s)	420, 569, 758, 1054
BseLI	CCNNNNNNNGG	2 cut(s)	459, 1045
BseNI	ACTGG	3 cut(s)	336, 590, 872
BseRI	GAGGAG	1 cut(s)	312
BseXI	GCAGC	5 cut(s)	346, 368, 500, 749, 926
BseYI	CCCAGC	2 cut(s)	113, 292
BsgI	GTGCAG	3 cut(s)	430, 507, 660
BshFI	GGCC	3 cut(s)	183, 288, 870
BshNI	GGYRCC	1 cut(s)	443
BshVI	ATCGAT	1 cut(s)	695
BsiSI	CCGG	1 cut(s)	483
BslFI	GGGAC	3 cut(s)	342, 727, 794
BslI	CCNNNNNNNGG	2 cut(s)	459, 1045
BsmAI	GTCTC	2 cut(s)	142, 576
BsmFI	GGGAC	3 cut(s)	342, 727, 794
BsmI	GAATGC	1 cut(s)	635
BsnI	GGCC	3 cut(s)	183, 288, 870
Bso31I	GGTCTC	1 cut(s)	142
Bsp119I	TTCGAA	1 cut(s)	268
Bsp1286I	GDGCHC	1 cut(s)	599
Bsp1407I	TGTACA	1 cut(s)	804
Bsp143I	GATC	3 cut(s)	729, 748, 1074
BspANI	GGCC	3 cut(s)	183, 288, 870
BspDI	ATCGAT	1 cut(s)	695
BspHI	TCATGA	2 cut(s)	751, 879
BspLI	GGNNCC	3 cut(s)	119, 445, 598
BspOI	GCTAGC	1 cut(s)	203
BspPI	GGATC	1 cut(s)	1069
BspQI	GCTCTTC	2 cut(s)	18, 216
BspT104I	TTCGAA	1 cut(s)	268
BspT107I	GGYRCC	1 cut(s)	443
BspTNI	GGTCTC	1 cut(s)	142
BsrFI	RCCGGY	1 cut(s)	482
BsrGI	TGTACA	1 cut(s)	804
BsrI	ACTGG	3 cut(s)	336, 590, 872
BssAI	RCCGGY	1 cut(s)	482
BssMI	GATC	3 cut(s)	729, 748, 1074
Bst4CI	ACNGT	2 cut(s)	785, 809
Bst6I	CTCTTC	2 cut(s)	18, 216
BstAUI	TGTACA	1 cut(s)	804
BstBI	TTCGAA	1 cut(s)	268
BstC8I	GCNNGC	2 cut(s)	201, 290
BstF5I	GGATG	4 cut(s)	420, 569, 758, 1054
BstKTI	GATC	3 cut(s)	732, 751, 1077
BstMAI	GTCTC	2 cut(s)	142, 576
BstMBI	GATC	3 cut(s)	729, 748, 1074
BstMWI	GCNNNNNNNGC	4 cut(s)	215, 356, 488, 734
BstV1I	GCAGC	5 cut(s)	346, 368, 500, 749, 926
BstV2I	GAAGAC	1 cut(s)	268
BstX2I	RGATCY	1 cut(s)	1074
BstXI	CCANNNNNNTGG	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	1074
Bsu15I	ATCGAT	1 cut(s)	695
BsuI	GTATCC	1 cut(s)	681
BsuRI	GGCC	3 cut(s)	183, 288, 870
BsuTUI	ATCGAT	1 cut(s)	695
BtsCI	GGATG	4 cut(s)	420, 569, 758, 1054
BtsIMutI	CAGTG	3 cut(s)	259, 491, 814
Cac8I	GCNNGC	2 cut(s)	201, 290
CaiI	CAGNNNCTG	1 cut(s)	585
CciI	TCATGA	2 cut(s)	751, 879
Cfr10I	RCCGGY	1 cut(s)	482
Cfr13I	GGNCC	2 cut(s)	286, 869
ClaI	ATCGAT	1 cut(s)	695
CseI	GACGC	1 cut(s)	508
Csp6I	GTAC	3 cut(s)	444, 786, 805
CspCI	CAANNNNNGTGG	2 cut(s)	892, 927
CviAII	CATG	8 cut(s)	154, 185, 325, 381, 733, 752, 777, 880
CviQI	GTAC	3 cut(s)	444, 786, 805
DpnI	GATC	3 cut(s)	731, 750, 1076
DpnII	GATC	3 cut(s)	729, 748, 1074
EaeI	YGGCCR	1 cut(s)	181
Eam1104I	CTCTTC	2 cut(s)	18, 216
EarI	CTCTTC	2 cut(s)	18, 216
Eco24I	GRGCYC	1 cut(s)	599
Eco31I	GGTCTC	1 cut(s)	142
EcoT38I	GRGCYC	1 cut(s)	599
FaeI	CATG	8 cut(s)	157, 188, 328, 384, 736, 755, 780, 883
FaqI	GGGAC	3 cut(s)	342, 727, 794
FatI	CATG	8 cut(s)	153, 184, 324, 380, 732, 751, 776, 879
FblI	GTMKAC	2 cut(s)	576, 998
Fnu4HI	GCNGC	5 cut(s)	357, 360, 489, 738, 915
FokI	GGATG	4 cut(s)	427, 556, 745, 1061
FriOI	GRGCYC	1 cut(s)	599
Fsp4HI	GCNGC	5 cut(s)	357, 360, 489, 738, 915
FspBI	CTAG	2 cut(s)	200, 746
GluI	GCNGC	5 cut(s)	357, 360, 489, 738, 915
GsaI	CCCAGC	2 cut(s)	117, 296
HaeIII	GGCC	3 cut(s)	183, 288, 870
HapII	CCGG	1 cut(s)	483
HgaI	GACGC	1 cut(s)	508
Hin1II	CATG	8 cut(s)	157, 188, 328, 384, 736, 755, 780, 883
HindIII	AAGCTT	1 cut(s)	437
HinfI	GANTC	2 cut(s)	715, 828
HpaII	CCGG	1 cut(s)	483
HphI	GGTGA	2 cut(s)	336, 823
Hpy166II	GTNNAC	3 cut(s)	577, 788, 999
Hpy188I	TCNGA	1 cut(s)	261
Hpy188III	TCNNGA	4 cut(s)	746, 752, 880, 1061
Hpy8I	GTNNAC	3 cut(s)	577, 788, 999
HpyAV	CCTTC	1 cut(s)	1039
HpyCH4III	ACNGT	2 cut(s)	785, 809
HpyCH4IV	ACGT	1 cut(s)	701
HpyCH4V	TGCA	9 cut(s)	16, 218, 356, 411, 488, 532, 677, 844, 914
HpyF10VI	GCNNNNNNNGC	4 cut(s)	215, 356, 488, 734
HpySE526I	ACGT	1 cut(s)	701
Hsp92II	CATG	8 cut(s)	157, 188, 328, 384, 736, 755, 780, 883
KpnI	GGTACC	1 cut(s)	447
Kzo9I	GATC	3 cut(s)	729, 748, 1074
LguI	GCTCTTC	2 cut(s)	18, 216
LmnI	GCTCC	3 cut(s)	602, 802, 971
Lsp1109I	GCAGC	5 cut(s)	346, 368, 500, 749, 926
LweI	GCATC	2 cut(s)	767, 1039
MaeI	CTAG	2 cut(s)	200, 746
MaeII	ACGT	1 cut(s)	701
MalI	GATC	3 cut(s)	731, 750, 1076
MboI	GATC	3 cut(s)	729, 748, 1074
MboII	GAAGA	7 cut(s)	35, 203, 268, 271, 321, 599, 1045
MfeI	CAATTG	1 cut(s)	906
MflI	RGATCY	1 cut(s)	1074
MhlI	GDGCHC	1 cut(s)	599
MlsI	TGGCCA	1 cut(s)	183
MluCI	AATT	8 cut(s)	264, 319, 422, 513, 741, 906, 1079, 1087
MluNI	TGGCCA	1 cut(s)	183
MlyI	GAGTC	1 cut(s)	709
MnlI	CCTC	9 cut(s)	41, 54, 58, 225, 290, 553, 637, 772, 860
Mox20I	TGGCCA	1 cut(s)	183
MscI	TGGCCA	1 cut(s)	183
MseI	TTAA	3 cut(s)	132, 938, 1090
MslI	CAYNNNNRTG	1 cut(s)	839
Msp20I	TGGCCA	1 cut(s)	183
MspA1I	CMGCKG	1 cut(s)	359
MspI	CCGG	1 cut(s)	483
MunI	CAATTG	1 cut(s)	906
Mva1269I	GAATGC	1 cut(s)	635
MwoI	GCNNNNNNNGC	4 cut(s)	215, 356, 488, 734
NdeII	GATC	3 cut(s)	729, 748, 1074
NheI	GCTAGC	1 cut(s)	199
NlaIII	CATG	8 cut(s)	157, 188, 328, 384, 736, 755, 780, 883
NlaIV	GGNNCC	3 cut(s)	119, 445, 598
NspV	TTCGAA	1 cut(s)	268
PagI	TCATGA	2 cut(s)	751, 879
PciSI	GCTCTTC	2 cut(s)	18, 216
PctI	GAATGC	1 cut(s)	635
PfeI	GAWTC	1 cut(s)	828
PkrI	GCNGC	5 cut(s)	358, 361, 490, 739, 916
PleI	GAGTC	1 cut(s)	709
PpsI	GAGTC	1 cut(s)	709
PspFI	CCCAGC	2 cut(s)	113, 292
PspN4I	GGNNCC	3 cut(s)	119, 445, 598
PspPI	GGNCC	2 cut(s)	286, 869
PstNI	CAGNNNCTG	1 cut(s)	585
PsuI	RGATCY	1 cut(s)	1074
PvuII	CAGCTG	1 cut(s)	359
RsaI	GTAC	3 cut(s)	445, 787, 806
RsaNI	GTAC	3 cut(s)	444, 786, 805
RseI	CAYNNNNRTG	1 cut(s)	839
SapI	GCTCTTC	2 cut(s)	18, 216
SaqAI	TTAA	3 cut(s)	132, 938, 1090
SatI	GCNGC	5 cut(s)	357, 360, 489, 738, 915
Sau3AI	GATC	3 cut(s)	729, 748, 1074
Sau96I	GGNCC	2 cut(s)	286, 869
SchI	GAGTC	1 cut(s)	709
SduI	GDGCHC	1 cut(s)	599
SfaNI	GCATC	2 cut(s)	767, 1039
SfuI	TTCGAA	1 cut(s)	268
SmiMI	CAYNNNNRTG	1 cut(s)	839
SmlI	CTYRAG	2 cut(s)	537, 1059
SmoI	CTYRAG	2 cut(s)	537, 1059
Sse9I	AATT	8 cut(s)	264, 319, 422, 513, 741, 906, 1079, 1087
SspMI	CTAG	2 cut(s)	200, 746
TaaI	ACNGT	2 cut(s)	785, 809
TaiI	ACGT	1 cut(s)	704
TaqI	TCGA	3 cut(s)	268, 663, 695
TasI	AATT	8 cut(s)	264, 319, 422, 513, 741, 906, 1079, 1087
TatI	WGTACW	2 cut(s)	785, 804
TfiI	GAWTC	1 cut(s)	828
Tru1I	TTAA	3 cut(s)	132, 938, 1090
Tru9I	TTAA	3 cut(s)	132, 938, 1090
TscAI	CASTG	3 cut(s)	259, 498, 814
TseI	GCWGC	5 cut(s)	356, 359, 488, 737, 914
TspDTI	ATGAA	4 cut(s)	17, 606, 768, 868
TspGWI	ACGGA	2 cut(s)	35, 562
TspRI	CASTG	3 cut(s)	259, 498, 814
XapI	RAATTY	1 cut(s)	422
XbaI	TCTAGA	1 cut(s)	745
XcmI	CCANNNNNNNNNTGG	1 cut(s)	455
XmiI	GTMKAC	2 cut(s)	576, 998
XspI	CTAG	2 cut(s)	200, 746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.