Rh2CG485400

EamA-like transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0003698
Physical Location & Seq
Reverse (-)
65069498 .. 65070828
1331 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG485400.1

Sequence Viewer

Length: 879 bp
ATGCGAAAAGTAATGCAGATAGAAGAGCAAGAAGAGAGAGTTAAAGGAAGCCGTAAGTGGGATAGAGTAATCGAAGAATCGAAACCCTACATCCTCTGTATATTTTCTAATATATGCTTTGCCGGGTTCAATATTGTCTCCAAATTGGCTCTAGACAAAGGCATGAGCCGTTATGTGCTTGTGGTTTATGGACATGCTTTTGGAACTCTAGCAACTGCTCTTTTTGCATTTCTCTTTGAGAGGAAAAATGAGAGCAAAATCAATGTTCAGATCTTGCGAAATGTCTTTTTCTTAGGTCTGCTGAGAGTGTTAGGAAGTACACTGTACTACATGGGATTGGAATACACTTCACCAGCTTTTGCATCTGCCATGTCCAACATGATTCCATCGATTACCTTCATCTTAGCTGTTTTGTGCAGGATGGAACAGTTTGATATTTCCAAGCCTGGTACCCAAGCCAAGATTGGAGGAACTCTTGCTGCCTTTGCTGGTGCAACACTCATGACCCTCTACAAGGGCGTTGCTGTAATTACAATGCACACCAAAAGCTCCTATCAAACTGCAGGTACCTCAAAATCATCTACACACGCAGAATGGATCAAGGGCTCCCTTGTCCTTATTGTTTCATATAGTTCAGTTGCAGCATCCTATATCTTACAGACATCAACAATTAAAATGTATCCAGCACCAATCACTCTTACATCATTGACCTGCTTATCTGGGACACTGCTCTCAACAATCATGGCAGCAATTCTAGATCACAAAGCATCTTCTTGGAAGTTATCATGGAACACACTTCTTGCTCCTATGTATAGTGTAAGAACTCAATCACACGTCTTCAACTGTCTATGGCCTATGATGTTTGTTTATGAAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

292

Amino Acids

32.5

Weight (kDa)

9.48

Isoelectric Point (pI)

42.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 29 - 168 2.7e-13 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 554, 719
Acc65I GGTACC 2 cut(s) 449, 566
AccB1I GGYRCC 2 cut(s) 449, 566
AclWI GGATC 1 cut(s) 605
AfaI GTAC 4 cut(s) 319, 326, 451, 568
AfiI CCNNNNNNNGG 2 cut(s) 58, 514
AflIII ACRYGT 1 cut(s) 832
AgsI TTSAA 2 cut(s) 130, 841
AjiI CACGTC 1 cut(s) 835
AjnI CCWGG 1 cut(s) 445
AluBI AGCT 3 cut(s) 356, 407, 549
AluI AGCT 3 cut(s) 356, 407, 549
Alw26I GTCTC 1 cut(s) 142
AlwI GGATC 1 cut(s) 605
AoxI GGCC 1 cut(s) 851
ApeKI GCWGC 3 cut(s) 479, 641, 746
Asp718I GGTACC 2 cut(s) 449, 566
AsuC2I CCSGG 1 cut(s) 124
AsuHPI GGTGA 1 cut(s) 342
BanI GGYRCC 2 cut(s) 449, 566
BanII GRGCYC 1 cut(s) 608
BbsI GAAGAC 1 cut(s) 829
BbvI GCAGC 3 cut(s) 466, 653, 758
BccI CCATC 2 cut(s) 394, 415
BceAI ACGGC 2 cut(s) 36, 153
BciT130I CCWGG 1 cut(s) 447
BciVI GTATCC 1 cut(s) 690
BcnI CCSGG 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 142
BfaI CTAG 3 cut(s) 152, 209, 755
BfmI CTRYAG 1 cut(s) 561
BfuAI ACCTGC 2 cut(s) 554, 719
BfuI GTATCC 1 cut(s) 690
BglII AGATCT 1 cut(s) 270
BisI GCNGC 3 cut(s) 480, 642, 747
BlsI GCNGC 3 cut(s) 481, 643, 748
Bme1390I CCNGG 2 cut(s) 124, 447
BmgBI CACGTC 1 cut(s) 835
BmiI GGNNCC 3 cut(s) 451, 568, 607
BmrFI CCNGG 2 cut(s) 124, 447
BmsI GCATC 3 cut(s) 371, 653, 776
BpiI GAAGAC 1 cut(s) 829
BpuMI CCSGG 1 cut(s) 124
Bsa29I ATCGAT 1 cut(s) 389
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 514
BseBI CCWGG 1 cut(s) 447
BseCI ATCGAT 1 cut(s) 389
BseGI GGATG 3 cut(s) 90, 426, 644
BseLI CCNNNNNNNGG 2 cut(s) 58, 514
BseMII CTCAG 1 cut(s) 293
BseXI GCAGC 3 cut(s) 466, 653, 758
BsgI GTGCAG 1 cut(s) 436
BshFI GGCC 1 cut(s) 853
BshNI GGYRCC 2 cut(s) 449, 566
BshVI ATCGAT 1 cut(s) 389
BsiSI CCGG 1 cut(s) 123
BslFI GGGAC 1 cut(s) 736
BslI CCNNNNNNNGG 2 cut(s) 58, 514
BsmAI GTCTC 1 cut(s) 142
BsmFI GGGAC 1 cut(s) 736
BsnI GGCC 1 cut(s) 853
Bsp1286I GDGCHC 1 cut(s) 608
Bsp143I GATC 3 cut(s) 270, 597, 757
BspANI GGCC 1 cut(s) 853
BspCNI CTCAG 1 cut(s) 294
BspDI ATCGAT 1 cut(s) 389
BspHI TCATGA 1 cut(s) 501
BspLI GGNNCC 3 cut(s) 451, 568, 607
BspMAI CTGCAG 1 cut(s) 565
BspMI ACCTGC 2 cut(s) 554, 719
BspPI GGATC 1 cut(s) 605
BspQI GCTCTTC 1 cut(s) 18
BspT107I GGYRCC 2 cut(s) 449, 566
BssMI GATC 3 cut(s) 270, 597, 757
Bst2UI CCWGG 1 cut(s) 447
Bst4CI ACNGT 3 cut(s) 324, 429, 845
Bst6I CTCTTC 2 cut(s) 18, 27
BstDEI CTNAG 3 cut(s) 292, 302, 403
BstENI CCTNNNNNAGG 1 cut(s) 512
BstF5I GGATG 3 cut(s) 90, 426, 644
BstKTI GATC 3 cut(s) 273, 600, 760
BstMAI GTCTC 1 cut(s) 142
BstMBI GATC 3 cut(s) 270, 597, 757
BstMWI GCNNNNNNNGC 2 cut(s) 224, 485
BstNI CCWGG 1 cut(s) 447
BstNSI RCATGY 1 cut(s) 197
BstSCI CCNGG 2 cut(s) 122, 445
BstSFI CTRYAG 1 cut(s) 561
BstV1I GCAGC 3 cut(s) 466, 653, 758
BstV2I GAAGAC 1 cut(s) 829
BstX2I RGATCY 1 cut(s) 270
BstYI RGATCY 1 cut(s) 270
Bsu15I ATCGAT 1 cut(s) 389
BsuI GTATCC 1 cut(s) 690
BsuRI GGCC 1 cut(s) 853
BsuTUI ATCGAT 1 cut(s) 389
BtrI CACGTC 1 cut(s) 835
BtsCI GGATG 3 cut(s) 90, 426, 644
BtsI GCAGTG 1 cut(s) 725
BtsIMutI CAGTG 2 cut(s) 320, 725
BveI ACCTGC 2 cut(s) 554, 719
CciI TCATGA 1 cut(s) 501
ClaI ATCGAT 1 cut(s) 389
Csp6I GTAC 4 cut(s) 318, 325, 450, 567
CviAII CATG 8 cut(s) 163, 194, 331, 370, 379, 502, 742, 786
CviQI GTAC 4 cut(s) 318, 325, 450, 567
DdeI CTNAG 3 cut(s) 292, 302, 403
DpnI GATC 3 cut(s) 272, 599, 759
DpnII GATC 3 cut(s) 270, 597, 757
Eam1104I CTCTTC 2 cut(s) 18, 27
EarI CTCTTC 2 cut(s) 18, 27
Eco24I GRGCYC 1 cut(s) 608
EcoNI CCTNNNNNAGG 1 cut(s) 512
EcoRII CCWGG 1 cut(s) 445
EcoT38I GRGCYC 1 cut(s) 608
FaeI CATG 8 cut(s) 166, 197, 334, 373, 382, 505, 745, 789
FaqI GGGAC 1 cut(s) 736
FatI CATG 8 cut(s) 162, 193, 330, 369, 378, 501, 741, 785
Fnu4HI GCNGC 3 cut(s) 480, 642, 747
FokI GGATG 3 cut(s) 77, 433, 631
FriOI GRGCYC 1 cut(s) 608
Fsp4HI GCNGC 3 cut(s) 480, 642, 747
FspBI CTAG 3 cut(s) 152, 209, 755
GluI GCNGC 3 cut(s) 480, 642, 747
HaeIII GGCC 1 cut(s) 853
HapII CCGG 1 cut(s) 123
Hin1II CATG 8 cut(s) 166, 197, 334, 373, 382, 505, 745, 789
HinfI GANTC 2 cut(s) 77, 382
HpaII CCGG 1 cut(s) 123
HphI GGTGA 1 cut(s) 342
Hpy166II GTNNAC 1 cut(s) 320
Hpy188I TCNGA 1 cut(s) 270
Hpy188III TCNNGA 3 cut(s) 152, 502, 755
Hpy8I GTNNAC 1 cut(s) 320
HpyAV CCTTC 1 cut(s) 406
HpyCH4III ACNGT 3 cut(s) 324, 429, 845
HpyCH4IV ACGT 1 cut(s) 834
HpyCH4V TGCA 8 cut(s) 16, 227, 362, 417, 494, 538, 563, 641
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 485
HpyF3I CTNAG 3 cut(s) 292, 302, 403
HpySE526I ACGT 1 cut(s) 834
Hsp92II CATG 8 cut(s) 166, 197, 334, 373, 382, 505, 745, 789
KpnI GGTACC 2 cut(s) 453, 570
Kzo9I GATC 3 cut(s) 270, 597, 757
LguI GCTCTTC 1 cut(s) 18
LmnI GCTCC 3 cut(s) 554, 611, 808
Lsp1109I GCAGC 3 cut(s) 466, 653, 758
LweI GCATC 3 cut(s) 371, 653, 776
MaeI CTAG 3 cut(s) 152, 209, 755
MaeII ACGT 1 cut(s) 834
MalI GATC 3 cut(s) 272, 599, 759
MboI GATC 3 cut(s) 270, 597, 757
MboII GAAGA 5 cut(s) 35, 44, 86, 762, 829
MflI RGATCY 1 cut(s) 270
MhlI GDGCHC 1 cut(s) 608
MluCI AATT 4 cut(s) 143, 528, 669, 750
MmeI TCCRAC 1 cut(s) 399
MnlI CCTC 5 cut(s) 104, 234, 461, 518, 580
MseI TTAA 2 cut(s) 42, 672
MspI CCGG 1 cut(s) 123
MspR9I CCNGG 2 cut(s) 124, 447
MvaI CCWGG 1 cut(s) 447
MwoI GCNNNNNNNGC 2 cut(s) 224, 485
NciI CCSGG 1 cut(s) 124
NdeII GATC 3 cut(s) 270, 597, 757
NlaIII CATG 8 cut(s) 166, 197, 334, 373, 382, 505, 745, 789
NlaIV GGNNCC 3 cut(s) 451, 568, 607
NspI RCATGY 1 cut(s) 197
PagI TCATGA 1 cut(s) 501
PciSI GCTCTTC 1 cut(s) 18
PfeI GAWTC 2 cut(s) 77, 382
PkrI GCNGC 3 cut(s) 481, 643, 748
Psp6I CCWGG 1 cut(s) 445
PspGI CCWGG 1 cut(s) 445
PspN4I GGNNCC 3 cut(s) 451, 568, 607
PstI CTGCAG 1 cut(s) 565
PsuI RGATCY 1 cut(s) 270
RsaI GTAC 4 cut(s) 319, 326, 451, 568
RsaNI GTAC 4 cut(s) 318, 325, 450, 567
SapI GCTCTTC 1 cut(s) 18
SaqAI TTAA 2 cut(s) 42, 672
SatI GCNGC 3 cut(s) 480, 642, 747
Sau3AI GATC 3 cut(s) 270, 597, 757
ScrFI CCNGG 2 cut(s) 124, 447
SduI GDGCHC 1 cut(s) 608
SetI ASST 9 cut(s) 298, 358, 398, 409, 551, 568, 572, 713, 837
SfaNI GCATC 3 cut(s) 371, 653, 776
SfcI CTRYAG 1 cut(s) 561
Sse9I AATT 4 cut(s) 143, 528, 669, 750
SspI AATATT 1 cut(s) 133
SspMI CTAG 3 cut(s) 152, 209, 755
StyD4I CCNGG 2 cut(s) 122, 445
TaaI ACNGT 3 cut(s) 324, 429, 845
TaiI ACGT 1 cut(s) 837
TaqI TCGA 3 cut(s) 72, 80, 389
TasI AATT 4 cut(s) 143, 528, 669, 750
TatI WGTACW 2 cut(s) 317, 324
TfiI GAWTC 2 cut(s) 77, 382
Tru1I TTAA 2 cut(s) 42, 672
Tru9I TTAA 2 cut(s) 42, 672
TscAI CASTG 2 cut(s) 327, 732
TseI GCWGC 3 cut(s) 479, 641, 746
TspDTI ATGAA 2 cut(s) 388, 615
TspRI CASTG 2 cut(s) 327, 732
XagI CCTNNNNNAGG 1 cut(s) 512
XbaI TCTAGA 2 cut(s) 151, 754
XceI RCATGY 1 cut(s) 197
XcmI CCANNNNNNNNNTGG 1 cut(s) 461
XspI CTAG 3 cut(s) 152, 209, 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.