RLG00000020673

EamA-like transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0003698
Physical Location & Seq
Reverse (-)
67356800 .. 67357822
1023 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020673

Sequence Viewer

Length: 624 bp
ATGGAAGAGCAAGAAAAGAGAGTGAAAAGAAGCACCAGGAGCGATACAGTTATTGAAGAGTCGAAACCCTACATCCTCTGTATATTTTCTAATGTATGCTTCGCCGGGTACACTATTGTCTCCAAAGTCGCTCTAGACAAAGGCACGAACCGTTATGTGTTTGTGGTTTATGGACATGGTTTTGGAACTCTAGCAACTGCTCTTTTTGCATTTCTCTTTGAGAGGTTTATCTTTTTCATTCTTCTTGGAATTCTTGAGGTGTTAGGAAGAACACTGTACTACATGGGATTGGAATACACTTCACCAACTTTTGCATCTGCCATGGGCAACATGATTCCATCGATTACCTTCATCTTAGCTGTTTTGTGCAAGATGGAACAGTTTGATATTTCCAAGCCTGGTACCCAAGCCAACATTGGGGGAACTCTTGCTGCCTTTGCTGGTGCAACAGTCATGACCCTCTACAAGGGCGTCGCAGTAATTACAATGCACACCAAAAGCTCCCATCAAACTGCAGCTACCTCAAAATCATCTACAGACGCAGAATGGATAAAGGGCTCCCTTGTCCTTATTGTTTCATTTAGTTCGTTAGCAGCATTCTATATCTTACAGGTACTGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

208

Amino Acids

22.72

Weight (kDa)

8.72

Isoelectric Point (pI)

37.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 23 - 132 3.5e-11 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 401
AccB1I GGYRCC 1 cut(s) 401
AcsI RAATTY 1 cut(s) 249
AcyI GRCGYC 1 cut(s) 471
AfaI GTAC 4 cut(s) 110, 278, 403, 615
AfiI CCNNNNNNNGG 2 cut(s) 417, 466
AgsI TTSAA 1 cut(s) 56
AjnI CCWGG 2 cut(s) 35, 397
AluBI AGCT 3 cut(s) 359, 501, 518
AluI AGCT 3 cut(s) 359, 501, 518
Alw26I GTCTC 1 cut(s) 124
AlwNI CAGNNNCTG 1 cut(s) 616
ApeKI GCWGC 3 cut(s) 431, 515, 593
ApoI RAATTY 1 cut(s) 249
Asp718I GGTACC 1 cut(s) 401
AsuC2I CCSGG 1 cut(s) 106
AsuHPI GGTGA 1 cut(s) 294
BanI GGYRCC 1 cut(s) 401
BanII GRGCYC 1 cut(s) 560
BbvI GCAGC 3 cut(s) 418, 527, 605
BccI CCATC 3 cut(s) 346, 367, 513
BciT130I CCWGG 2 cut(s) 37, 399
BcnI CCSGG 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 124
BfaI CTAG 2 cut(s) 134, 191
BfmI CTRYAG 2 cut(s) 513, 534
BisI GCNGC 3 cut(s) 432, 516, 594
BlsI GCNGC 3 cut(s) 433, 517, 595
Bme1390I CCNGG 3 cut(s) 37, 106, 399
BmiI GGNNCC 2 cut(s) 403, 559
BmrFI CCNGG 3 cut(s) 37, 106, 399
BmsI GCATC 1 cut(s) 323
BpuEI CTTGAG 1 cut(s) 275
BpuMI CCSGG 1 cut(s) 106
Bsa29I ATCGAT 1 cut(s) 341
BsaHI GRCGYC 1 cut(s) 471
BsaJI CCNNGG 1 cut(s) 321
Bsc4I CCNNNNNNNGG 2 cut(s) 417, 466
BseBI CCWGG 2 cut(s) 37, 399
BseCI ATCGAT 1 cut(s) 341
BseDI CCNNGG 1 cut(s) 321
BseGI GGATG 1 cut(s) 72
BseLI CCNNNNNNNGG 2 cut(s) 417, 466
BseXI GCAGC 3 cut(s) 418, 527, 605
BshNI GGYRCC 1 cut(s) 401
BshVI ATCGAT 1 cut(s) 341
BsiSI CCGG 1 cut(s) 105
BslI CCNNNNNNNGG 2 cut(s) 417, 466
BsmAI GTCTC 1 cut(s) 124
BsmI GAATGC 1 cut(s) 596
Bsp1286I GDGCHC 1 cut(s) 560
Bsp19I CCATGG 1 cut(s) 321
BspDI ATCGAT 1 cut(s) 341
BspHI TCATGA 1 cut(s) 453
BspLI GGNNCC 2 cut(s) 403, 559
BspMAI CTGCAG 1 cut(s) 517
BspT107I GGYRCC 1 cut(s) 401
BssECI CCNNGG 1 cut(s) 321
BssNI GRCGYC 1 cut(s) 471
BssT1I CCWWGG 1 cut(s) 321
Bst2UI CCWGG 2 cut(s) 37, 399
Bst4CI ACNGT 5 cut(s) 49, 152, 276, 381, 451
Bst6I CTCTTC 1 cut(s) 51
BstACI GRCGYC 1 cut(s) 471
BstDEI CTNAG 1 cut(s) 355
BstDSI CCRYGG 1 cut(s) 321
BstENI CCTNNNNNAGG 1 cut(s) 464
BstF5I GGATG 1 cut(s) 72
BstMAI GTCTC 1 cut(s) 124
BstMWI GCNNNNNNNGC 3 cut(s) 39, 206, 437
BstNI CCWGG 2 cut(s) 37, 399
BstSCI CCNGG 3 cut(s) 35, 104, 397
BstSFI CTRYAG 2 cut(s) 513, 534
BstV1I GCAGC 3 cut(s) 418, 527, 605
Bsu15I ATCGAT 1 cut(s) 341
BsuTUI ATCGAT 1 cut(s) 341
BtgI CCRYGG 1 cut(s) 321
BtsCI GGATG 1 cut(s) 72
BtsIMutI CAGTG 1 cut(s) 272
CaiI CAGNNNCTG 1 cut(s) 616
CciI TCATGA 1 cut(s) 453
ClaI ATCGAT 1 cut(s) 341
CseI GACGC 2 cut(s) 460, 548
Csp6I GTAC 4 cut(s) 109, 277, 402, 614
CviAII CATG 5 cut(s) 176, 283, 322, 331, 454
CviJI RGCY 6 cut(s) 359, 397, 410, 501, 518, 558
CviKI_1 RGCY 6 cut(s) 359, 397, 410, 501, 518, 558
CviQI GTAC 4 cut(s) 109, 277, 402, 614
DdeI CTNAG 1 cut(s) 355
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 321
Eco24I GRGCYC 1 cut(s) 560
EcoNI CCTNNNNNAGG 1 cut(s) 464
EcoRI GAATTC 1 cut(s) 249
EcoRII CCWGG 2 cut(s) 35, 397
EcoT14I CCWWGG 1 cut(s) 321
EcoT38I GRGCYC 1 cut(s) 560
ErhI CCWWGG 1 cut(s) 321
FaeI CATG 5 cut(s) 179, 286, 325, 334, 457
FatI CATG 5 cut(s) 175, 282, 321, 330, 453
Fnu4HI GCNGC 3 cut(s) 432, 516, 594
FokI GGATG 1 cut(s) 59
FriOI GRGCYC 1 cut(s) 560
Fsp4HI GCNGC 3 cut(s) 432, 516, 594
FspBI CTAG 2 cut(s) 134, 191
GluI GCNGC 3 cut(s) 432, 516, 594
HapII CCGG 1 cut(s) 105
HgaI GACGC 2 cut(s) 460, 548
Hin1I GRCGYC 1 cut(s) 471
Hin1II CATG 5 cut(s) 179, 286, 325, 334, 457
HinfI GANTC 2 cut(s) 59, 334
HpaII CCGG 1 cut(s) 105
HphI GGTGA 1 cut(s) 294
Hpy166II GTNNAC 1 cut(s) 111
Hpy188III TCNNGA 3 cut(s) 134, 254, 454
Hpy8I GTNNAC 1 cut(s) 111
Hpy99I CGWCG 1 cut(s) 476
HpyAV CCTTC 1 cut(s) 358
HpyCH4III ACNGT 5 cut(s) 49, 152, 276, 381, 451
HpyCH4V TGCA 6 cut(s) 209, 314, 369, 446, 490, 515
HpyF10VI GCNNNNNNNGC 3 cut(s) 39, 206, 437
HpyF3I CTNAG 1 cut(s) 355
Hsp92I GRCGYC 1 cut(s) 471
Hsp92II CATG 5 cut(s) 179, 286, 325, 334, 457
KpnI GGTACC 1 cut(s) 405
LmnI GCTCC 3 cut(s) 39, 506, 563
LpnPI CCDG 7 cut(s) 22, 49, 118, 384, 411, 426, 596
Lsp1109I GCAGC 3 cut(s) 418, 527, 605
LweI GCATC 1 cut(s) 323
MaeI CTAG 2 cut(s) 134, 191
MboII GAAGA 4 cut(s) 17, 68, 233, 279
MhlI GDGCHC 1 cut(s) 560
MluCI AATT 2 cut(s) 249, 480
MlyI GAGTC 1 cut(s) 68
MnlI CCTC 5 cut(s) 86, 216, 250, 470, 532
MspI CCGG 1 cut(s) 105
MspR9I CCNGG 3 cut(s) 37, 106, 399
Mva1269I GAATGC 1 cut(s) 596
MvaI CCWGG 2 cut(s) 37, 399
MwoI GCNNNNNNNGC 3 cut(s) 39, 206, 437
NciI CCSGG 1 cut(s) 106
NcoI CCATGG 1 cut(s) 321
NlaIII CATG 5 cut(s) 179, 286, 325, 334, 457
NlaIV GGNNCC 2 cut(s) 403, 559
PagI TCATGA 1 cut(s) 453
PctI GAATGC 1 cut(s) 596
PfeI GAWTC 1 cut(s) 334
PkrI GCNGC 3 cut(s) 433, 517, 595
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
Psp6I CCWGG 2 cut(s) 35, 397
PspGI CCWGG 2 cut(s) 35, 397
PspN4I GGNNCC 2 cut(s) 403, 559
PstI CTGCAG 1 cut(s) 517
PstNI CAGNNNCTG 1 cut(s) 616
RsaI GTAC 4 cut(s) 110, 278, 403, 615
RsaNI GTAC 4 cut(s) 109, 277, 402, 614
SatI GCNGC 3 cut(s) 432, 516, 594
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 3 cut(s) 37, 106, 399
SduI GDGCHC 1 cut(s) 560
SetI ASST 8 cut(s) 227, 261, 350, 361, 503, 520, 524, 615
SfaNI GCATC 1 cut(s) 323
SfcI CTRYAG 2 cut(s) 513, 534
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 2 cut(s) 249, 480
SspMI CTAG 2 cut(s) 134, 191
StyD4I CCNGG 3 cut(s) 35, 104, 397
StyI CCWWGG 1 cut(s) 321
TaaI ACNGT 5 cut(s) 49, 152, 276, 381, 451
TaqI TCGA 2 cut(s) 62, 341
TasI AATT 2 cut(s) 249, 480
TatI WGTACW 1 cut(s) 276
TfiI GAWTC 1 cut(s) 334
TscAI CASTG 1 cut(s) 279
TseI GCWGC 3 cut(s) 431, 515, 593
TspDTI ATGAA 3 cut(s) 226, 340, 567
TspRI CASTG 1 cut(s) 279
XagI CCTNNNNNAGG 1 cut(s) 464
XapI RAATTY 1 cut(s) 249
XbaI TCTAGA 1 cut(s) 133
XcmI CCANNNNNNNNNTGG 1 cut(s) 413
XspI CTAG 2 cut(s) 134, 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.