Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004244

Physical Location & Seq

Genomic Coordinates Reverse (-)

8260996 .. 8261406

Gene Structure 411 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g08370.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGTGGAGTTTCCTGCTCTCAATGGCCAAAGTGTGTCTTACGCAGTGCTTCAATTGCCTCCACAGACACTCCTCCCACCTCATACTCGCCCCGATGCCGCCGGACTTTTGTTCCTTTTGGATGGTTCCTTGGAAGTAGGCCTAATAGACACGAAAAATAATTTGTACACTAAAAAGCTTCAGGCCGGAGACATCTTTATATTTCCCAAGGGATTGATACATTATCAGTATAACACTGATTCTCAACTTCCAGCCACCGCCATTGCAGCATTTGGAAGTGCAAGCGCTAGAGCAGTTGCGGTGCCACCTTCTGTGTTTGCTTCGGGTATTGACGATGTCATCCTTGCCAAATCCTTCAAGACAGATATCGACACCATTAGGAAGATTAAGGCTGGCCTCACTACTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016197 GO:0019538 GO:0019941 GO:0030163 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

137

Amino Acids

14.47

Weight (kDa)

6.71

Isoelectric Point (pI)

36.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	3 - 125	2.8e-25	Cupin
Cupin_2	PF07883	17 - 89	2.7e-08	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004244)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g08370 FvH4_7g08383 FvH4_7g08390
malus_domestica	MD07G1084100.v1.1
prunus_persica	Prupe.2G111000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0340191 RchiOBHm_Chr1g0340211 RchiOBHm_Chr1g0340251
rosa_laevigata	RLG00000029004 RLG00000029005 RLG00000029007
rosa_multiflora	Rmu_co8401649.1_g000001 Rmu_sc0001836.1_g000001 Rmu_sc0001836.1_g000002 Rmu_sc0001836.1_g000005 Rmu_sc0005193.1_g000011 Rmu_sc0005193.1_g000016 Rmu_sc0005193.1_g000018
rosa_roxburghii	Rroxscaffold_4G00311090
rosa_rugosa	Rorug01G0164700.1 Rorug01G0165000 Rorug01G0165100
rosa_samantha	Rh1AG179300 Rh1AG179700 Rh1BG147500 Rh1BG147700 Rh1BG147900 Rh1CG166200 Rh1DG179400 Rh1DG179500 Rh1DG179900
rosa_wichuraiana	Rw1G014940 Rw1G014960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	301
AciI	CCGC	3 cut(s)	99, 258, 299
AcoI	YGGCCR	1 cut(s)	25
AcuI	CTGAAG	1 cut(s)	164
AfaI	GTAC	1 cut(s)	167
AfeI	AGCGCT	1 cut(s)	286
AgsI	TTSAA	2 cut(s)	53, 358
AluBI	AGCT	2 cut(s)	178, 408
AluI	AGCT	2 cut(s)	178, 408
Alw26I	GTCTC	1 cut(s)	183
Aor51HI	AGCGCT	1 cut(s)	286
AoxI	GGCC	4 cut(s)	25, 139, 183, 394
ApeKI	GCWGC	1 cut(s)	266
AspLEI	GCGC	1 cut(s)	287
BalI	TGGCCA	1 cut(s)	27
BanI	GGYRCC	1 cut(s)	301
BbvI	GCAGC	1 cut(s)	278
BccI	CCATC	1 cut(s)	116
BcoDI	GTCTC	1 cut(s)	183
BfaI	CTAG	2 cut(s)	288, 405
BfoI	RGCGCY	1 cut(s)	288
BisI	GCNGC	2 cut(s)	99, 267
BlsI	GCNGC	2 cut(s)	100, 268
BmiI	GGNNCC	2 cut(s)	127, 303
BmsI	GCATC	1 cut(s)	85
BsaJI	CCNNGG	2 cut(s)	129, 207
BsaXI	ACNNNNNCTCC	2 cut(s)	54, 84
Bse3DI	GCAATG	1 cut(s)	261
BseDI	CCNNGG	2 cut(s)	129, 207
BseGI	GGATG	2 cut(s)	127, 339
BseMI	GCAATG	1 cut(s)	261
BseRI	GAGGAG	1 cut(s)	62
BseXI	GCAGC	1 cut(s)	278
BshFI	GGCC	4 cut(s)	27, 141, 185, 396
BshNI	GGYRCC	1 cut(s)	301
BsiSI	CCGG	2 cut(s)	102, 186
BsmAI	GTCTC	1 cut(s)	183
BsnI	GGCC	4 cut(s)	27, 141, 185, 396
Bsp1407I	TGTACA	1 cut(s)	165
BspACI	CCGC	3 cut(s)	99, 258, 299
BspANI	GGCC	4 cut(s)	27, 141, 185, 396
BspLI	GGNNCC	2 cut(s)	127, 303
BspT107I	GGYRCC	1 cut(s)	301
BsrDI	GCAATG	1 cut(s)	261
BsrGI	TGTACA	1 cut(s)	165
BssECI	CCNNGG	2 cut(s)	129, 207
BssT1I	CCWWGG	2 cut(s)	129, 207
BstAUI	TGTACA	1 cut(s)	165
BstC8I	GCNNGC	2 cut(s)	283, 394
BstF5I	GGATG	2 cut(s)	127, 339
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	287
BstMAI	GTCTC	1 cut(s)	183
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 266
BstV1I	GCAGC	1 cut(s)	278
BsuRI	GGCC	4 cut(s)	27, 141, 185, 396
BtsCI	GGATG	2 cut(s)	127, 339
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	2 cut(s)	51, 234
Cac8I	GCNNGC	2 cut(s)	283, 394
CfoI	GCGC	1 cut(s)	287
Csp6I	GTAC	1 cut(s)	166
CspCI	CAANNNNNGTGG	2 cut(s)	244, 279
CviJI	RGCY	8 cut(s)	27, 141, 178, 185, 254, 392, 396, 408
CviKI_1	RGCY	8 cut(s)	27, 141, 178, 185, 254, 392, 396, 408
CviQI	GTAC	1 cut(s)	166
EaeI	YGGCCR	1 cut(s)	25
Eco130I	CCWWGG	2 cut(s)	129, 207
Eco147I	AGGCCT	1 cut(s)	141
Eco32I	GATATC	1 cut(s)	367
Eco47III	AGCGCT	1 cut(s)	286
Eco57I	CTGAAG	1 cut(s)	164
EcoRV	GATATC	1 cut(s)	367
EcoT14I	CCWWGG	2 cut(s)	129, 207
ErhI	CCWWGG	2 cut(s)	129, 207
FaiI	YATR	3 cut(s)	84, 200, 231
FalI	AAGNNNNNCTT	2 cut(s)	22, 54
Fnu4HI	GCNGC	2 cut(s)	99, 267
FokI	GGATG	2 cut(s)	134, 326
Fsp4HI	GCNGC	2 cut(s)	99, 267
FspBI	CTAG	2 cut(s)	288, 405
GlaI	GCGC	1 cut(s)	286
GluI	GCNGC	2 cut(s)	99, 267
HaeII	RGCGCY	1 cut(s)	288
HaeIII	GGCC	4 cut(s)	27, 141, 185, 396
HapII	CCGG	2 cut(s)	102, 186
HhaI	GCGC	1 cut(s)	287
Hin6I	GCGC	1 cut(s)	285
HinP1I	GCGC	1 cut(s)	285
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	1 cut(s)	239
HpaII	CCGG	2 cut(s)	102, 186
Hpy166II	GTNNAC	1 cut(s)	168
Hpy188III	TCNNGA	1 cut(s)	358
Hpy8I	GTNNAC	1 cut(s)	168
HpyAV	CCTTC	2 cut(s)	318, 364
HpyCH4V	TGCA	2 cut(s)	266, 281
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 266
HspAI	GCGC	1 cut(s)	285
LpnPI	CCDG	6 cut(s)	27, 115, 167, 199, 264, 378
Lsp1109I	GCAGC	1 cut(s)	278
LweI	GCATC	1 cut(s)	85
MaeI	CTAG	2 cut(s)	288, 405
MboII	GAAGA	1 cut(s)	394
MfeI	CAATTG	1 cut(s)	53
MlsI	TGGCCA	1 cut(s)	27
MluCI	AATT	2 cut(s)	53, 160
MluNI	TGGCCA	1 cut(s)	27
MnlI	CCTC	4 cut(s)	69, 83, 90, 407
Mox20I	TGGCCA	1 cut(s)	27
MscI	TGGCCA	1 cut(s)	27
MseI	TTAA	1 cut(s)	387
Msp20I	TGGCCA	1 cut(s)	27
MspI	CCGG	2 cut(s)	102, 186
MunI	CAATTG	1 cut(s)	53
MwoI	GCNNNNNNNGC	2 cut(s)	55, 266
NlaIV	GGNNCC	2 cut(s)	127, 303
PceI	AGGCCT	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	239
PflFI	GACNNNGTC	1 cut(s)	335
PkrI	GCNGC	2 cut(s)	100, 268
PspN4I	GGNNCC	2 cut(s)	127, 303
PsyI	GACNNNGTC	1 cut(s)	335
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	2 cut(s)	99, 267
SetI	ASST	4 cut(s)	82, 180, 310, 410
SfaNI	GCATC	1 cut(s)	85
Sse9I	AATT	2 cut(s)	53, 160
SseBI	AGGCCT	1 cut(s)	141
SsiI	CCGC	3 cut(s)	99, 258, 299
SspMI	CTAG	2 cut(s)	288, 405
StuI	AGGCCT	1 cut(s)	141
StyI	CCWWGG	2 cut(s)	129, 207
TaqI	TCGA	1 cut(s)	369
TasI	AATT	2 cut(s)	53, 160
TatI	WGTACW	1 cut(s)	165
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	2 cut(s)	51, 241
TseI	GCWGC	1 cut(s)	266
TspRI	CASTG	2 cut(s)	51, 241
Tth111I	GACNNNGTC	1 cut(s)	335
XspI	CTAG	2 cut(s)	288, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.