Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001836.1

Orthogroup ID

OG0004244

Physical Location & Seq

Genomic Coordinates Reverse (-)

20533 .. 21153

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001836.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atgacaatgaggttgtttcaattactgatgatgaccatattagttcttgctctggccacctccaaaagggtcttggcaagtgatccggatatccttttggactttttactcccacaaaacagctcaacagttgatgctagtttttttacattcactggatttcgcggaatatttgatcaagcacccaaaaccttgaagacaacaaaagccagcatggttgagtttcctgctctcaatggccagagtgtgtcatatgcggtgcttcaattgcctccacagacactcttcccacctcatactcgccctgatgcagctggacttctgttccttttagatggttccttggaagtaggcctaatagacacaaaaaataatctgtatactcaaaagcttcaggctggagatatgtttgtatttcccaagggattaatacattatcagtataacactgattctcaattgccagccactgccattgcagcattcggaagtgcaagtgctagagcagttgcggtgccaccttctgtttttgcttcaggtattgacgatgtcatccttgccaaatccttcaagacagatgttgatactattaagaagattaaggctagcctcactagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016197 GO:0019538 GO:0019941 GO:0030163 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

206

Amino Acids

22.27

Weight (kDa)

7.92

Isoelectric Point (pI)

30.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004244)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g08370 FvH4_7g08383 FvH4_7g08390
malus_domestica	MD07G1084100.v1.1
prunus_persica	Prupe.2G111000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0340191 RchiOBHm_Chr1g0340211 RchiOBHm_Chr1g0340251
rosa_laevigata	RLG00000029004 RLG00000029005 RLG00000029007
rosa_multiflora	Rmu_co8401649.1_g000001 Rmu_sc0001836.1_g000001 Rmu_sc0001836.1_g000002 Rmu_sc0001836.1_g000005 Rmu_sc0005193.1_g000011 Rmu_sc0005193.1_g000016 Rmu_sc0005193.1_g000018
rosa_roxburghii	Rroxscaffold_4G00311090
rosa_rugosa	Rorug01G0164700.1 Rorug01G0165000 Rorug01G0165100
rosa_samantha	Rh1AG179300 Rh1AG179700 Rh1BG147500 Rh1BG147700 Rh1BG147900 Rh1CG166200 Rh1DG179400 Rh1DG179500 Rh1DG179900
rosa_wichuraiana	Rw1G014940 Rw1G014960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	514
AccI	GTMKAC	1 cut(s)	380
AccII	CGCG	1 cut(s)	165
AccIII	TCCGGA	1 cut(s)	85
AciI	CCGC	3 cut(s)	165, 257, 512
AclWI	GGATC	1 cut(s)	77
AcoI	YGGCCR	2 cut(s)	54, 238
AcuI	CTGAAG	2 cut(s)	377, 519
AfiI	CCNNNNNNNGG	1 cut(s)	66
AgsI	TTSAA	4 cut(s)	20, 196, 266, 571
AluBI	AGCT	4 cut(s)	123, 314, 391, 618
AluI	AGCT	4 cut(s)	123, 314, 391, 618
AlwI	GGATC	1 cut(s)	77
AlwNI	CAGNNNCTG	1 cut(s)	470
Aor13HI	TCCGGA	1 cut(s)	85
AoxI	GGCC	3 cut(s)	54, 238, 352
ApeKI	GCWGC	2 cut(s)	311, 479
AseI	ATTAAT	1 cut(s)	428
AsuNHI	GCTAGC	1 cut(s)	605
BalI	TGGCCA	2 cut(s)	56, 240
BanI	GGYRCC	1 cut(s)	514
BbsI	GAAGAC	1 cut(s)	203
BbvI	GCAGC	2 cut(s)	323, 491
BccI	CCATC	1 cut(s)	329
BclI	TGATCA	1 cut(s)	175
BfaI	CTAG	4 cut(s)	138, 501, 606, 615
BisI	GCNGC	2 cut(s)	312, 480
BlsI	GCNGC	2 cut(s)	313, 481
BmiI	GGNNCC	2 cut(s)	340, 516
BmsI	GCATC	2 cut(s)	124, 298
BmtI	GCTAGC	1 cut(s)	609
BpiI	GAAGAC	1 cut(s)	203
BpmI	CTGGAG	1 cut(s)	420
BsaJI	CCNNGG	2 cut(s)	342, 420
BsaWI	WCCGGW	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse1I	ACTGG	1 cut(s)	160
Bse3DI	GCAATG	1 cut(s)	474
BseAI	TCCGGA	1 cut(s)	85
BseDI	CCNNGG	2 cut(s)	342, 420
BseGI	GGATG	1 cut(s)	552
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseMI	GCAATG	1 cut(s)	474
BseNI	ACTGG	1 cut(s)	160
BseXI	GCAGC	2 cut(s)	323, 491
Bsh1236I	CGCG	1 cut(s)	165
BshFI	GGCC	3 cut(s)	56, 240, 354
BshNI	GGYRCC	1 cut(s)	514
BsiSI	CCGG	1 cut(s)	86
BslI	CCNNNNNNNGG	1 cut(s)	66
BsmI	GAATGC	1 cut(s)	482
BsnI	GGCC	3 cut(s)	56, 240, 354
Bsp13I	TCCGGA	1 cut(s)	85
Bsp143I	GATC	2 cut(s)	82, 175
BspACI	CCGC	3 cut(s)	165, 257, 512
BspANI	GGCC	3 cut(s)	56, 240, 354
BspEI	TCCGGA	1 cut(s)	85
BspFNI	CGCG	1 cut(s)	165
BspLI	GGNNCC	2 cut(s)	340, 516
BspOI	GCTAGC	1 cut(s)	609
BspPI	GGATC	1 cut(s)	77
BspT107I	GGYRCC	1 cut(s)	514
BsrDI	GCAATG	1 cut(s)	474
BsrI	ACTGG	1 cut(s)	160
BssECI	CCNNGG	2 cut(s)	342, 420
BssMI	GATC	2 cut(s)	82, 175
BssNAI	GTATAC	1 cut(s)	381
BssT1I	CCWWGG	2 cut(s)	342, 420
Bst1107I	GTATAC	1 cut(s)	381
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	1 cut(s)	290
BstC8I	GCNNGC	3 cut(s)	211, 465, 607
BstENI	CCTNNNNNAGG	1 cut(s)	64
BstF5I	GGATG	1 cut(s)	552
BstFNI	CGCG	1 cut(s)	165
BstKTI	GATC	2 cut(s)	85, 178
BstMBI	GATC	2 cut(s)	82, 175
BstMWI	GCNNNNNNNGC	3 cut(s)	268, 479, 615
BstUI	CGCG	1 cut(s)	165
BstV1I	GCAGC	2 cut(s)	323, 491
BstV2I	GAAGAC	1 cut(s)	203
BstZ17I	GTATAC	1 cut(s)	381
BsuRI	GGCC	3 cut(s)	56, 240, 354
BtsCI	GGATG	1 cut(s)	552
BtsI	GCAGTG	1 cut(s)	468
BtsIMutI	CAGTG	3 cut(s)	153, 447, 468
Cac8I	GCNNGC	3 cut(s)	211, 465, 607
CaiI	CAGNNNCTG	1 cut(s)	470
CspCI	CAANNNNNGTGG	2 cut(s)	457, 492
CviAII	CATG	1 cut(s)	214
DpnI	GATC	2 cut(s)	84, 177
DpnII	GATC	2 cut(s)	82, 175
EaeI	YGGCCR	2 cut(s)	54, 238
Eam1104I	CTCTTC	1 cut(s)	290
EarI	CTCTTC	1 cut(s)	290
Eco130I	CCWWGG	2 cut(s)	342, 420
Eco147I	AGGCCT	1 cut(s)	354
Eco32I	GATATC	1 cut(s)	91
Eco57I	CTGAAG	2 cut(s)	377, 519
EcoNI	CCTNNNNNAGG	1 cut(s)	64
EcoRV	GATATC	1 cut(s)	91
EcoT14I	CCWWGG	2 cut(s)	342, 420
ErhI	CCWWGG	2 cut(s)	342, 420
FaeI	CATG	1 cut(s)	217
FaiI	YATR	8 cut(s)	38, 215, 253, 255, 297, 381, 407, 444
FatI	CATG	1 cut(s)	213
FauNDI	CATATG	1 cut(s)	253
FbaI	TGATCA	1 cut(s)	175
FblI	GTMKAC	1 cut(s)	380
Fnu4HI	GCNGC	2 cut(s)	312, 480
FokI	GGATG	1 cut(s)	539
Fsp4HI	GCNGC	2 cut(s)	312, 480
FspBI	CTAG	4 cut(s)	138, 501, 606, 615
GluI	GCNGC	2 cut(s)	312, 480
GsuI	CTGGAG	1 cut(s)	420
HaeIII	GGCC	3 cut(s)	56, 240, 354
HapII	CCGG	1 cut(s)	86
Hin1II	CATG	1 cut(s)	217
HindIII	AAGCTT	1 cut(s)	389
HinfI	GANTC	1 cut(s)	452
HpaII	CCGG	1 cut(s)	86
Hpy166II	GTNNAC	1 cut(s)	381
Hpy188I	TCNGA	1 cut(s)	488
Hpy188III	TCNNGA	2 cut(s)	86, 571
Hpy8I	GTNNAC	1 cut(s)	381
HpyAV	CCTTC	2 cut(s)	531, 577
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	3 cut(s)	311, 479, 494
HpyF10VI	GCNNNNNNNGC	3 cut(s)	268, 479, 615
Hsp92II	CATG	1 cut(s)	217
Kpn2I	TCCGGA	1 cut(s)	85
Ksp22I	TGATCA	1 cut(s)	175
Kzo9I	GATC	2 cut(s)	82, 175
Lsp1109I	GCAGC	2 cut(s)	323, 491
LweI	GCATC	2 cut(s)	124, 298
MaeI	CTAG	4 cut(s)	138, 501, 606, 615
MalI	GATC	2 cut(s)	84, 177
MboI	GATC	2 cut(s)	82, 175
MboII	GAAGA	3 cut(s)	208, 277, 607
MfeI	CAATTG	2 cut(s)	266, 458
MlsI	TGGCCA	2 cut(s)	56, 240
MluCI	AATT	3 cut(s)	20, 266, 458
MluNI	TGGCCA	2 cut(s)	56, 240
MnlI	CCTC	5 cut(s)	3, 70, 282, 303, 620
Mox20I	TGGCCA	2 cut(s)	56, 240
MroI	TCCGGA	1 cut(s)	85
MscI	TGGCCA	2 cut(s)	56, 240
MseI	TTAA	3 cut(s)	428, 591, 600
Msp20I	TGGCCA	2 cut(s)	56, 240
MspA1I	CMGCKG	1 cut(s)	314
MspI	CCGG	1 cut(s)	86
MunI	CAATTG	2 cut(s)	266, 458
Mva1269I	GAATGC	1 cut(s)	482
MvnI	CGCG	1 cut(s)	165
MwoI	GCNNNNNNNGC	3 cut(s)	268, 479, 615
NdeI	CATATG	1 cut(s)	253
NdeII	GATC	2 cut(s)	82, 175
NheI	GCTAGC	1 cut(s)	605
NlaIII	CATG	1 cut(s)	217
NlaIV	GGNNCC	2 cut(s)	340, 516
PceI	AGGCCT	1 cut(s)	354
PctI	GAATGC	1 cut(s)	482
PfeI	GAWTC	1 cut(s)	452
PflFI	GACNNNGTC	1 cut(s)	548
PkrI	GCNGC	2 cut(s)	313, 481
PshBI	ATTAAT	1 cut(s)	428
PspN4I	GGNNCC	2 cut(s)	340, 516
PstNI	CAGNNNCTG	1 cut(s)	470
PsyI	GACNNNGTC	1 cut(s)	548
PvuII	CAGCTG	1 cut(s)	314
SaqAI	TTAA	3 cut(s)	428, 591, 600
SatI	GCNGC	2 cut(s)	312, 480
Sau3AI	GATC	2 cut(s)	82, 175
SfaNI	GCATC	2 cut(s)	124, 298
Sse9I	AATT	3 cut(s)	20, 266, 458
SseBI	AGGCCT	1 cut(s)	354
SsiI	CCGC	3 cut(s)	165, 257, 512
SspI	AATATT	1 cut(s)	171
SspMI	CTAG	4 cut(s)	138, 501, 606, 615
StuI	AGGCCT	1 cut(s)	354
StyI	CCWWGG	2 cut(s)	342, 420
TaaI	ACNGT	1 cut(s)	130
TasI	AATT	3 cut(s)	20, 266, 458
TfiI	GAWTC	1 cut(s)	452
Tru1I	TTAA	3 cut(s)	428, 591, 600
Tru9I	TTAA	3 cut(s)	428, 591, 600
TscAI	CASTG	3 cut(s)	160, 454, 475
TseI	GCWGC	2 cut(s)	311, 479
TspRI	CASTG	3 cut(s)	160, 454, 475
Tth111I	GACNNNGTC	1 cut(s)	548
VspI	ATTAAT	1 cut(s)	428
XagI	CCTNNNNNAGG	1 cut(s)	64
XcmI	CCANNNNNNNNNTGG	1 cut(s)	70
XmiI	GTMKAC	1 cut(s)	380
XspI	CTAG	4 cut(s)	138, 501, 606, 615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.