Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004244

Physical Location & Seq

Genomic Coordinates Forward (+)

36408612 .. 36409133

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG179400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGTTGAGTTTCCTGCTCTCAATGGCCAGAGTGTGTCATACGCGGTGCTTCAATTGCCTCCACAGACACTCTTCCCACCTCATACTCGCCTTGATGCAACTGGACTTCTGTTCCTTTTGGATGGTTCCTTGGAAGTAGGCCTAATAGACACAAAAAATAATCTGTATACTCAAAAGCTTCAGGCTGGAGATATGTTTGTATTTCCCAAGGGATTAATACATTATCAGTATAACACTGATTCTCAATTGCCAGCAACCGCCATTGCAGCATTCGGAAGTGCAAGTGCTAGAGCAGTTGCGGTGCCACCTTCTGTTTTTGCTTCAGGTATTGACGATGTCATCCTTGCCAAATCCTTCAAGACAGATCTTGATACTATTAAGAAGATTAAGGCTGGCCTCACTACTAGCTACCTGCGGAATGATTCAAGACTCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016197 GO:0019538 GO:0019941 GO:0030163 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

145

Amino Acids

15.67

Weight (kDa)

6.71

Isoelectric Point (pI)

39.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	3 - 125	1.7e-25	Cupin
Cupin_2	PF07883	17 - 89	2.2e-07	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004244)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g08370 FvH4_7g08383 FvH4_7g08390
malus_domestica	MD07G1084100.v1.1
prunus_persica	Prupe.2G111000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0340191 RchiOBHm_Chr1g0340211 RchiOBHm_Chr1g0340251
rosa_laevigata	RLG00000029004 RLG00000029005 RLG00000029007
rosa_multiflora	Rmu_co8401649.1_g000001 Rmu_sc0001836.1_g000001 Rmu_sc0001836.1_g000002 Rmu_sc0001836.1_g000005 Rmu_sc0005193.1_g000011 Rmu_sc0005193.1_g000016 Rmu_sc0005193.1_g000018
rosa_roxburghii	Rroxscaffold_4G00311090
rosa_rugosa	Rorug01G0164700.1 Rorug01G0165000 Rorug01G0165100
rosa_samantha	Rh1AG179300 Rh1AG179700 Rh1BG147500 Rh1BG147700 Rh1BG147900 Rh1CG166200 Rh1DG179400 Rh1DG179500 Rh1DG179900
rosa_wichuraiana	Rw1G014940 Rw1G014960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	420
AccB1I	GGYRCC	1 cut(s)	301
AccI	GTMKAC	1 cut(s)	167
AccII	CGCG	1 cut(s)	44
AciI	CCGC	4 cut(s)	44, 258, 299, 415
AcoI	YGGCCR	1 cut(s)	25
AcuI	CTGAAG	2 cut(s)	164, 306
AgsI	TTSAA	3 cut(s)	53, 358, 426
AluBI	AGCT	2 cut(s)	178, 408
AluI	AGCT	2 cut(s)	178, 408
AoxI	GGCC	3 cut(s)	25, 139, 394
ApeKI	GCWGC	1 cut(s)	266
AseI	ATTAAT	1 cut(s)	215
BalI	TGGCCA	1 cut(s)	27
BanI	GGYRCC	1 cut(s)	301
BbvI	GCAGC	1 cut(s)	278
BccI	CCATC	1 cut(s)	116
BfaI	CTAG	2 cut(s)	288, 405
BfuAI	ACCTGC	1 cut(s)	420
BglII	AGATCT	1 cut(s)	364
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
BmiI	GGNNCC	2 cut(s)	127, 303
BmsI	GCATC	1 cut(s)	85
BpmI	CTGGAG	1 cut(s)	207
BsaJI	CCNNGG	2 cut(s)	129, 207
Bse1I	ACTGG	1 cut(s)	106
Bse3DI	GCAATG	1 cut(s)	261
BseDI	CCNNGG	2 cut(s)	129, 207
BseGI	GGATG	2 cut(s)	127, 339
BseMI	GCAATG	1 cut(s)	261
BseNI	ACTGG	1 cut(s)	106
BseXI	GCAGC	1 cut(s)	278
Bsh1236I	CGCG	1 cut(s)	44
BshFI	GGCC	3 cut(s)	27, 141, 396
BshNI	GGYRCC	1 cut(s)	301
BsmI	GAATGC	1 cut(s)	269
BsnI	GGCC	3 cut(s)	27, 141, 396
Bsp143I	GATC	1 cut(s)	364
BspACI	CCGC	4 cut(s)	44, 258, 299, 415
BspANI	GGCC	3 cut(s)	27, 141, 396
BspFNI	CGCG	1 cut(s)	44
BspLI	GGNNCC	2 cut(s)	127, 303
BspMI	ACCTGC	1 cut(s)	420
BspT107I	GGYRCC	1 cut(s)	301
BsrDI	GCAATG	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	106
BssECI	CCNNGG	2 cut(s)	129, 207
BssMI	GATC	1 cut(s)	364
BssNAI	GTATAC	1 cut(s)	168
BssT1I	CCWWGG	2 cut(s)	129, 207
Bst1107I	GTATAC	1 cut(s)	168
Bst6I	CTCTTC	1 cut(s)	77
BstC8I	GCNNGC	2 cut(s)	252, 394
BstF5I	GGATG	2 cut(s)	127, 339
BstFNI	CGCG	1 cut(s)	44
BstKTI	GATC	1 cut(s)	367
BstMBI	GATC	1 cut(s)	364
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 266
BstUI	CGCG	1 cut(s)	44
BstV1I	GCAGC	1 cut(s)	278
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BstZ17I	GTATAC	1 cut(s)	168
BsuRI	GGCC	3 cut(s)	27, 141, 396
BtsCI	GGATG	2 cut(s)	127, 339
BtsIMutI	CAGTG	1 cut(s)	234
BveI	ACCTGC	1 cut(s)	420
Cac8I	GCNNGC	2 cut(s)	252, 394
CviJI	RGCY	7 cut(s)	27, 141, 178, 185, 392, 396, 408
CviKI_1	RGCY	7 cut(s)	27, 141, 178, 185, 392, 396, 408
DpnI	GATC	1 cut(s)	366
DpnII	GATC	1 cut(s)	364
EaeI	YGGCCR	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
Eco130I	CCWWGG	2 cut(s)	129, 207
Eco147I	AGGCCT	1 cut(s)	141
Eco57I	CTGAAG	2 cut(s)	164, 306
EcoT14I	CCWWGG	2 cut(s)	129, 207
ErhI	CCWWGG	2 cut(s)	129, 207
FaiI	YATR	5 cut(s)	40, 84, 168, 194, 231
FblI	GTMKAC	1 cut(s)	167
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	2 cut(s)	134, 326
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	2 cut(s)	288, 405
GluI	GCNGC	1 cut(s)	267
GsuI	CTGGAG	1 cut(s)	207
HaeIII	GGCC	3 cut(s)	27, 141, 396
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	3 cut(s)	239, 422, 429
Hpy166II	GTNNAC	1 cut(s)	168
Hpy188I	TCNGA	1 cut(s)	275
Hpy188III	TCNNGA	3 cut(s)	358, 368, 426
Hpy8I	GTNNAC	1 cut(s)	168
HpyAV	CCTTC	2 cut(s)	318, 364
HpyCH4V	TGCA	3 cut(s)	98, 266, 281
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 266
Kzo9I	GATC	1 cut(s)	364
LpnPI	CCDG	9 cut(s)	27, 41, 87, 167, 171, 264, 309, 378, 425
Lsp1109I	GCAGC	1 cut(s)	278
LweI	GCATC	1 cut(s)	85
MaeI	CTAG	2 cut(s)	288, 405
MalI	GATC	1 cut(s)	366
MboI	GATC	1 cut(s)	364
MboII	GAAGA	2 cut(s)	64, 394
MfeI	CAATTG	2 cut(s)	53, 245
MflI	RGATCY	1 cut(s)	364
MlsI	TGGCCA	1 cut(s)	27
MluCI	AATT	2 cut(s)	53, 245
MluNI	TGGCCA	1 cut(s)	27
MlyI	GAGTC	1 cut(s)	423
MnlI	CCTC	3 cut(s)	69, 90, 407
Mox20I	TGGCCA	1 cut(s)	27
MscI	TGGCCA	1 cut(s)	27
MseI	TTAA	3 cut(s)	215, 378, 387
Msp20I	TGGCCA	1 cut(s)	27
MunI	CAATTG	2 cut(s)	53, 245
Mva1269I	GAATGC	1 cut(s)	269
MvnI	CGCG	1 cut(s)	44
MwoI	GCNNNNNNNGC	2 cut(s)	55, 266
NdeII	GATC	1 cut(s)	364
NlaIV	GGNNCC	2 cut(s)	127, 303
PceI	AGGCCT	1 cut(s)	141
PctI	GAATGC	1 cut(s)	269
PfeI	GAWTC	2 cut(s)	239, 422
PflFI	GACNNNGTC	1 cut(s)	335
PkrI	GCNGC	1 cut(s)	268
PleI	GAGTC	1 cut(s)	423
PpsI	GAGTC	1 cut(s)	423
PshBI	ATTAAT	1 cut(s)	215
PspN4I	GGNNCC	2 cut(s)	127, 303
PsuI	RGATCY	1 cut(s)	364
PsyI	GACNNNGTC	1 cut(s)	335
SaqAI	TTAA	3 cut(s)	215, 378, 387
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	1 cut(s)	364
SchI	GAGTC	1 cut(s)	423
SetI	ASST	6 cut(s)	82, 180, 310, 328, 410, 414
SfaNI	GCATC	1 cut(s)	85
Sse9I	AATT	2 cut(s)	53, 245
SseBI	AGGCCT	1 cut(s)	141
SsiI	CCGC	4 cut(s)	44, 258, 299, 415
SspMI	CTAG	2 cut(s)	288, 405
StuI	AGGCCT	1 cut(s)	141
StyI	CCWWGG	2 cut(s)	129, 207
TasI	AATT	2 cut(s)	53, 245
TfiI	GAWTC	2 cut(s)	239, 422
Tru1I	TTAA	3 cut(s)	215, 378, 387
Tru9I	TTAA	3 cut(s)	215, 378, 387
TscAI	CASTG	1 cut(s)	241
TseI	GCWGC	1 cut(s)	266
TspRI	CASTG	1 cut(s)	241
Tth111I	GACNNNGTC	1 cut(s)	335
VspI	ATTAAT	1 cut(s)	215
XmiI	GTMKAC	1 cut(s)	167
XspI	CTAG	2 cut(s)	288, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.