Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004244

Physical Location & Seq

Genomic Coordinates Forward (+)

33274852 .. 33275529

Gene Structure 678 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G014960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGCTAGCAACAAAGTCGTTAACCAAAATAATTCTTCTTCCATTTATGGGTATGACTATGAGGTTGGTTCAATTAATGATGATGATGATCATATTAGTACTTGCTTTGGCCACCTCCAAAAGGGTCTTAGCAAGTGATCCTGACATTCTCTCTGATTATTTACTGCCTCAAAATAGCTCAACTGTTAATGCTACCTATTTTACATACACTGGATTCCGCGAGATATTTGATCAAACACCTGAAACCTTTAAGGCAACAAAAGCCAGTATGGTGGAGTTCCCTGCTCTCAATGGCCAGAGTGTGTCATATACAGTGCTTCAATTCCCTCCAAGCACACTGTTCCCACCTCACACCCGCCCTGATGCTACTGGACTTTTGTTCCTTCTTGCTGGTTCCTTAGAAGTCGGGTTCATTGACACAAAAAATGTCCTATACACTCAAAAGCTTCAGGCTGGAGATATATTTATATTTCCCAAGGGTTTAATCCATTATCAGTATAACTCTGATCCTCAGTTACGAGCTACCGCCATTGCAGCATTTGGAAGTGCAAGTGCTAGAGCAGTTACAGTGCCACCTTCTGTTTTTACCTCGGGTGTCGACGATGTCATCCTTGCCAAATCTTTCAAGACTGATGTTGATACCATTAAGAAGATTAAGGATGGTCTCACTACTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016197 GO:0019538 GO:0019941 GO:0030163 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

225

Amino Acids

24.62

Weight (kDa)

8.73

Isoelectric Point (pI)

28.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	81 - 215	2.3e-24	Cupin
Cupin_2	PF07883	106 - 171	1.4e-06	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004244)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g08370 FvH4_7g08383 FvH4_7g08390
malus_domestica	MD07G1084100.v1.1
prunus_persica	Prupe.2G111000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0340191 RchiOBHm_Chr1g0340211 RchiOBHm_Chr1g0340251
rosa_laevigata	RLG00000029004 RLG00000029005 RLG00000029007
rosa_multiflora	Rmu_co8401649.1_g000001 Rmu_sc0001836.1_g000001 Rmu_sc0001836.1_g000002 Rmu_sc0001836.1_g000005 Rmu_sc0005193.1_g000011 Rmu_sc0005193.1_g000016 Rmu_sc0005193.1_g000018
rosa_roxburghii	Rroxscaffold_4G00311090
rosa_rugosa	Rorug01G0164700.1 Rorug01G0165000 Rorug01G0165100
rosa_samantha	Rh1AG179300 Rh1AG179700 Rh1BG147500 Rh1BG147700 Rh1BG147900 Rh1CG166200 Rh1DG179400 Rh1DG179500 Rh1DG179900
rosa_wichuraiana	Rw1G014940 Rw1G014960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	597
AccII	CGCG	1 cut(s)	219
AciI	CCGC	3 cut(s)	217, 355, 525
AclWI	GGATC	2 cut(s)	131, 500
AcoI	YGGCCR	2 cut(s)	108, 292
AcuI	CTGAAG	1 cut(s)	431
AfaI	GTAC	1 cut(s)	99
AfiI	CCNNNNNNNGG	2 cut(s)	47, 120
AgsI	TTSAA	3 cut(s)	71, 320, 625
AluBI	AGCT	4 cut(s)	177, 445, 521, 675
AluI	AGCT	4 cut(s)	177, 445, 521, 675
Alw26I	GTCTC	1 cut(s)	668
AlwI	GGATC	2 cut(s)	131, 500
Ama87I	CYCGRG	1 cut(s)	589
AoxI	GGCC	2 cut(s)	108, 292
ApeKI	GCWGC	1 cut(s)	533
AseI	ATTAAT	1 cut(s)	74
AsuNHI	GCTAGC	1 cut(s)	4
AvaI	CYCGRG	1 cut(s)	589
BalI	TGGCCA	2 cut(s)	110, 294
BbvI	GCAGC	1 cut(s)	545
BccI	CCATC	1 cut(s)	653
BcgI	CGANNNNNNTGC	1 cut(s)	31
BclI	TGATCA	2 cut(s)	87, 229
BcoDI	GTCTC	1 cut(s)	668
BfaI	CTAG	3 cut(s)	5, 555, 672
BisI	GCNGC	1 cut(s)	534
BlsI	GCNGC	1 cut(s)	535
BmcAI	AGTACT	1 cut(s)	99
BmeT110I	CYCGRG	1 cut(s)	589
BmiI	GGNNCC	1 cut(s)	394
BmsI	GCATC	1 cut(s)	352
BmtI	GCTAGC	1 cut(s)	8
BpmI	CTGGAG	1 cut(s)	474
BsaBI	GATNNNNATC	1 cut(s)	86
BsaI	GGTCTC	1 cut(s)	668
BsaJI	CCNNGG	2 cut(s)	474, 588
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 120
Bse1I	ACTGG	3 cut(s)	214, 264, 373
Bse3DI	GCAATG	1 cut(s)	528
Bse8I	GATNNNNATC	1 cut(s)	86
BseDI	CCNNGG	2 cut(s)	474, 588
BseGI	GGATG	2 cut(s)	606, 664
BseJI	GATNNNNATC	1 cut(s)	86
BseLI	CCNNNNNNNGG	2 cut(s)	47, 120
BseMI	GCAATG	1 cut(s)	528
BseMII	CTCAG	1 cut(s)	524
BseNI	ACTGG	3 cut(s)	214, 264, 373
BseXI	GCAGC	1 cut(s)	545
Bsh1236I	CGCG	1 cut(s)	219
BshFI	GGCC	2 cut(s)	110, 294
BsiHKCI	CYCGRG	1 cut(s)	589
BslI	CCNNNNNNNGG	2 cut(s)	47, 120
BsmAI	GTCTC	1 cut(s)	668
BsnI	GGCC	2 cut(s)	110, 294
Bso31I	GGTCTC	1 cut(s)	668
BsoBI	CYCGRG	1 cut(s)	589
Bsp143I	GATC	4 cut(s)	87, 136, 229, 505
BspACI	CCGC	3 cut(s)	217, 355, 525
BspANI	GGCC	2 cut(s)	110, 294
BspCNI	CTCAG	1 cut(s)	523
BspFNI	CGCG	1 cut(s)	219
BspLI	GGNNCC	1 cut(s)	394
BspOI	GCTAGC	1 cut(s)	8
BspPI	GGATC	2 cut(s)	131, 500
BspTNI	GGTCTC	1 cut(s)	668
BsrDI	GCAATG	1 cut(s)	528
BsrI	ACTGG	3 cut(s)	214, 264, 373
BssECI	CCNNGG	2 cut(s)	474, 588
BssMI	GATC	4 cut(s)	87, 136, 229, 505
BssT1I	CCWWGG	1 cut(s)	474
Bst4CI	ACNGT	4 cut(s)	184, 313, 339, 568
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	3 cut(s)	127, 397, 510
BstENI	CCTNNNNNAGG	1 cut(s)	118
BstF5I	GGATG	2 cut(s)	606, 664
BstFNI	CGCG	1 cut(s)	219
BstKTI	GATC	4 cut(s)	90, 139, 232, 508
BstMAI	GTCTC	1 cut(s)	668
BstMBI	GATC	4 cut(s)	87, 136, 229, 505
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 533
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	545
BstXI	CCANNNNNNTGG	1 cut(s)	271
BsuRI	GGCC	2 cut(s)	110, 294
BtsCI	GGATG	2 cut(s)	606, 664
BtsIMutI	CAGTG	4 cut(s)	207, 318, 335, 573
Cac8I	GCNNGC	1 cut(s)	6
Csp6I	GTAC	1 cut(s)	98
CviJI	RGCY	8 cut(s)	110, 177, 263, 294, 445, 452, 521, 675
CviKI_1	RGCY	8 cut(s)	110, 177, 263, 294, 445, 452, 521, 675
CviQI	GTAC	1 cut(s)	98
DdeI	CTNAG	3 cut(s)	127, 397, 510
DpnI	GATC	4 cut(s)	89, 138, 231, 507
DpnII	GATC	4 cut(s)	87, 136, 229, 505
EaeI	YGGCCR	2 cut(s)	108, 292
Eco130I	CCWWGG	1 cut(s)	474
Eco31I	GGTCTC	1 cut(s)	668
Eco57I	CTGAAG	1 cut(s)	431
Eco88I	CYCGRG	1 cut(s)	589
EcoNI	CCTNNNNNAGG	1 cut(s)	118
EcoT14I	CCWWGG	1 cut(s)	474
ErhI	CCWWGG	1 cut(s)	474
FauI	CCCGC	1 cut(s)	362
FbaI	TGATCA	2 cut(s)	87, 229
FblI	GTMKAC	1 cut(s)	597
Fnu4HI	GCNGC	1 cut(s)	534
FokI	GGATG	2 cut(s)	593, 671
Fsp4HI	GCNGC	1 cut(s)	534
FspBI	CTAG	3 cut(s)	5, 555, 672
GluI	GCNGC	1 cut(s)	534
GsuI	CTGGAG	1 cut(s)	474
HaeIII	GGCC	2 cut(s)	110, 294
HincII	GTYRAC	2 cut(s)	21, 598
HindII	GTYRAC	2 cut(s)	21, 598
HindIII	AAGCTT	1 cut(s)	443
HinfI	GANTC	1 cut(s)	213
HpaI	GTTAAC	1 cut(s)	21
Hpy166II	GTNNAC	2 cut(s)	21, 598
Hpy188I	TCNGA	2 cut(s)	154, 505
Hpy188III	TCNNGA	2 cut(s)	140, 625
Hpy8I	GTNNAC	2 cut(s)	21, 598
Hpy99I	CGWCG	1 cut(s)	602
HpyAV	CCTTC	2 cut(s)	392, 585
HpyCH4III	ACNGT	4 cut(s)	184, 313, 339, 568
HpyCH4V	TGCA	2 cut(s)	533, 548
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 533
HpyF3I	CTNAG	3 cut(s)	127, 397, 510
Ksp22I	TGATCA	2 cut(s)	87, 229
KspAI	GTTAAC	1 cut(s)	21
Kzo9I	GATC	4 cut(s)	87, 136, 229, 505
Lsp1109I	GCAGC	1 cut(s)	545
LweI	GCATC	1 cut(s)	352
MaeI	CTAG	3 cut(s)	5, 555, 672
MaeIII	GTNAC	2 cut(s)	513, 562
MalI	GATC	4 cut(s)	89, 138, 231, 507
MboI	GATC	4 cut(s)	87, 136, 229, 505
MboII	GAAGA	3 cut(s)	26, 29, 661
MlsI	TGGCCA	2 cut(s)	110, 294
MluCI	AATT	3 cut(s)	30, 71, 320
MluNI	TGGCCA	2 cut(s)	110, 294
MnlI	CCTC	7 cut(s)	54, 124, 177, 336, 357, 519, 598
Mox20I	TGGCCA	2 cut(s)	110, 294
MscI	TGGCCA	2 cut(s)	110, 294
MseI	TTAA	7 cut(s)	20, 74, 186, 249, 482, 645, 654
Msp20I	TGGCCA	2 cut(s)	110, 294
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	2 cut(s)	260, 533
NdeII	GATC	4 cut(s)	87, 136, 229, 505
NheI	GCTAGC	1 cut(s)	4
NlaIV	GGNNCC	1 cut(s)	394
PfeI	GAWTC	1 cut(s)	213
PflFI	GACNNNGTC	1 cut(s)	602
PkrI	GCNGC	1 cut(s)	535
PshBI	ATTAAT	1 cut(s)	74
PspN4I	GGNNCC	1 cut(s)	394
PsyI	GACNNNGTC	1 cut(s)	602
RsaI	GTAC	1 cut(s)	99
RsaNI	GTAC	1 cut(s)	98
SalI	GTCGAC	1 cut(s)	596
SaqAI	TTAA	7 cut(s)	20, 74, 186, 249, 482, 645, 654
SatI	GCNGC	1 cut(s)	534
Sau3AI	GATC	4 cut(s)	87, 136, 229, 505
ScaI	AGTACT	1 cut(s)	99
SfaNI	GCATC	1 cut(s)	352
Sse9I	AATT	3 cut(s)	30, 71, 320
SsiI	CCGC	3 cut(s)	217, 355, 525
SspMI	CTAG	3 cut(s)	5, 555, 672
StyI	CCWWGG	1 cut(s)	474
TaaI	ACNGT	4 cut(s)	184, 313, 339, 568
TaqI	TCGA	1 cut(s)	597
TasI	AATT	3 cut(s)	30, 71, 320
TatI	WGTACW	1 cut(s)	97
TfiI	GAWTC	1 cut(s)	213
Tru1I	TTAA	7 cut(s)	20, 74, 186, 249, 482, 645, 654
Tru9I	TTAA	7 cut(s)	20, 74, 186, 249, 482, 645, 654
TscAI	CASTG	4 cut(s)	214, 318, 342, 573
TseI	GCWGC	1 cut(s)	533
TspDTI	ATGAA	1 cut(s)	400
TspRI	CASTG	4 cut(s)	214, 318, 342, 573
Tth111I	GACNNNGTC	1 cut(s)	602
VspI	ATTAAT	1 cut(s)	74
XagI	CCTNNNNNAGG	1 cut(s)	118
XmiI	GTMKAC	1 cut(s)	597
XspI	CTAG	3 cut(s)	5, 555, 672
ZrmI	AGTACT	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.