Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004244

Physical Location & Seq

Genomic Coordinates Reverse (-)

31262191 .. 31262820

Gene Structure 630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029004

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCTATGACTATGAGACTGATCCAATTACTGGTGATCATATCGGTAATTGCTTTGGCCATCTCCAGAAGAGCGCTAGCAAGTGATCCTGACATCACTTCCGATTACATACTCCCAGAAAACCACACCAGCACAACTGTTGATGCCTCATTCTTCACATACACAGGATTCCGCGGCTTATTTGATCAAGCACCCAAAACCTTCACGGCAACAAAAGCAAGCATGGATGAGTTCCCTGCTCTCAAAGGCCAGAGTGTGTCATACGCCATGCTTCAATTCCCTCCGAACACATTATTCCCACCTCACACCCGCCTTGACTCTGCCGGGCTTATGTTTGTCCTTACTGGTTCCTTGGAAGTAGGCCTAATTGACTCGAAAAACATTCTATATACTAAAAAGCTTCAAGCTGGAGATATGTTTGTGTTTCCTAAGGGATTGATCCATTATCAGTACAACGCGGATCCTAATTTGCCAGCCACTGCCATTGCAGCATTTGGAAGCGCAAGCGCTAGAACAGTTGCAGTTCCAGCCTCTATCTTCAGCTCTGGAATTCGTGATGTTGTCCTGGCAAAATCATTTAAGACAGATGTTAGTACCGTTAGGAAGATCAGGGCTGGCCTAAAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

210

Amino Acids

22.65

Weight (kDa)

9.48

Isoelectric Point (pI)

34.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	67 - 200	9.5e-26	Cupin
Cupin_2	PF07883	91 - 163	8.5e-07	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004244)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g08370 FvH4_7g08383 FvH4_7g08390
malus_domestica	MD07G1084100.v1.1
prunus_persica	Prupe.2G111000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0340191 RchiOBHm_Chr1g0340211 RchiOBHm_Chr1g0340251
rosa_laevigata	RLG00000029004 RLG00000029005 RLG00000029007
rosa_multiflora	Rmu_co8401649.1_g000001 Rmu_sc0001836.1_g000001 Rmu_sc0001836.1_g000002 Rmu_sc0001836.1_g000005 Rmu_sc0005193.1_g000011 Rmu_sc0005193.1_g000016 Rmu_sc0005193.1_g000018
rosa_roxburghii	Rroxscaffold_4G00311090
rosa_rugosa	Rorug01G0164700.1 Rorug01G0165000 Rorug01G0165100
rosa_samantha	Rh1AG179300 Rh1AG179700 Rh1BG147500 Rh1BG147700 Rh1BG147900 Rh1CG166200 Rh1DG179400 Rh1DG179500 Rh1DG179900
rosa_wichuraiana	Rw1G014940 Rw1G014960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	31
AccII	CGCG	2 cut(s)	174, 458
AciI	CCGC	4 cut(s)	172, 174, 310, 458
AclWI	GGATC	5 cut(s)	16, 80, 433, 455, 468
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	1 cut(s)	549
AcuI	CTGAAG	1 cut(s)	523
AfaI	GTAC	2 cut(s)	452, 595
AfeI	AGCGCT	2 cut(s)	75, 508
AfiI	CCNNNNNNNGG	1 cut(s)	31
AgsI	TTSAA	2 cut(s)	275, 404
AjnI	CCWGG	1 cut(s)	564
AluBI	AGCT	3 cut(s)	400, 407, 543
AluI	AGCT	3 cut(s)	400, 407, 543
Alw26I	GTCTC	1 cut(s)	10
AlwI	GGATC	5 cut(s)	16, 80, 433, 455, 468
AlwNI	CAGNNNCTG	1 cut(s)	479
Aor51HI	AGCGCT	2 cut(s)	75, 508
AoxI	GGCC	4 cut(s)	57, 247, 361, 616
ApeKI	GCWGC	1 cut(s)	488
ApoI	RAATTY	1 cut(s)	549
AspLEI	GCGC	3 cut(s)	76, 503, 509
AsuC2I	CCSGG	1 cut(s)	325
AsuHPI	GGTGA	1 cut(s)	46
AsuNHI	GCTAGC	1 cut(s)	76
AxyI	CCTNAGG	1 cut(s)	429
BalI	TGGCCA	1 cut(s)	59
BamHI	GGATCC	1 cut(s)	460
BbvI	GCAGC	1 cut(s)	500
BccI	CCATC	1 cut(s)	68
BceAI	ACGGC	1 cut(s)	222
BciT130I	CCWGG	1 cut(s)	566
BclI	TGATCA	2 cut(s)	36, 184
BcnI	CCSGG	1 cut(s)	325
BcoDI	GTCTC	1 cut(s)	10
BfaI	CTAG	2 cut(s)	77, 510
BfoI	RGCGCY	2 cut(s)	77, 510
BisI	GCNGC	2 cut(s)	175, 489
BlsI	GCNGC	2 cut(s)	176, 490
Bme1390I	CCNGG	2 cut(s)	325, 566
BmiI	GGNNCC	2 cut(s)	349, 462
BmrFI	CCNGG	2 cut(s)	325, 566
BmsI	GCATC	1 cut(s)	133
BmtI	GCTAGC	1 cut(s)	80
BpmI	CTGGAG	2 cut(s)	49, 429
BpuMI	CCSGG	1 cut(s)	325
BsaJI	CCNNGG	2 cut(s)	172, 351
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse1I	ACTGG	2 cut(s)	36, 349
Bse21I	CCTNAGG	1 cut(s)	429
Bse3DI	GCAATG	1 cut(s)	483
BseBI	CCWGG	1 cut(s)	566
BseDI	CCNNGG	2 cut(s)	172, 351
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMI	GCAATG	1 cut(s)	483
BseNI	ACTGG	2 cut(s)	36, 349
BseXI	GCAGC	1 cut(s)	500
Bsh1236I	CGCG	2 cut(s)	174, 458
BshFI	GGCC	4 cut(s)	59, 249, 363, 618
BsiSI	CCGG	1 cut(s)	324
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmAI	GTCTC	1 cut(s)	10
BsnI	GGCC	4 cut(s)	59, 249, 363, 618
Bsp143I	GATC	7 cut(s)	21, 36, 85, 184, 438, 460, 606
BspACI	CCGC	4 cut(s)	172, 174, 310, 458
BspANI	GGCC	4 cut(s)	59, 249, 363, 618
BspFNI	CGCG	2 cut(s)	174, 458
BspLI	GGNNCC	2 cut(s)	349, 462
BspOI	GCTAGC	1 cut(s)	80
BspPI	GGATC	5 cut(s)	16, 80, 433, 455, 468
BspQI	GCTCTTC	1 cut(s)	64
BsrDI	GCAATG	1 cut(s)	483
BsrI	ACTGG	2 cut(s)	36, 349
BssECI	CCNNGG	2 cut(s)	172, 351
BssMI	GATC	7 cut(s)	21, 36, 85, 184, 438, 460, 606
BssT1I	CCWWGG	1 cut(s)	351
Bst2UI	CCWGG	1 cut(s)	566
Bst4CI	ACNGT	3 cut(s)	139, 517, 598
Bst6I	CTCTTC	1 cut(s)	64
BstC8I	GCNNGC	5 cut(s)	78, 220, 474, 505, 616
BstDEI	CTNAG	1 cut(s)	429
BstDSI	CCRYGG	1 cut(s)	172
BstF5I	GGATG	1 cut(s)	232
BstFNI	CGCG	2 cut(s)	174, 458
BstH2I	RGCGCY	2 cut(s)	77, 510
BstHHI	GCGC	3 cut(s)	76, 503, 509
BstKTI	GATC	7 cut(s)	24, 39, 88, 187, 441, 463, 609
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	7 cut(s)	21, 36, 85, 184, 438, 460, 606
BstMWI	GCNNNNNNNGC	3 cut(s)	215, 488, 527
BstNI	CCWGG	1 cut(s)	566
BstSCI	CCNGG	2 cut(s)	323, 564
BstUI	CGCG	2 cut(s)	174, 458
BstV1I	GCAGC	1 cut(s)	500
BstX2I	RGATCY	1 cut(s)	460
BstYI	RGATCY	1 cut(s)	460
Bsu36I	CCTNAGG	1 cut(s)	429
BsuRI	GGCC	4 cut(s)	59, 249, 363, 618
BtgI	CCRYGG	1 cut(s)	172
BtsCI	GGATG	1 cut(s)	232
BtsI	GCAGTG	1 cut(s)	477
BtsIMutI	CAGTG	1 cut(s)	477
Cac8I	GCNNGC	5 cut(s)	78, 220, 474, 505, 616
CaiI	CAGNNNCTG	1 cut(s)	479
CfoI	GCGC	3 cut(s)	76, 503, 509
Cfr42I	CCGCGG	1 cut(s)	175
Csp6I	GTAC	2 cut(s)	451, 594
CspCI	CAANNNNNGTGG	2 cut(s)	466, 501
CviAII	CATG	2 cut(s)	223, 268
CviQI	GTAC	2 cut(s)	451, 594
DdeI	CTNAG	1 cut(s)	429
DpnI	GATC	7 cut(s)	23, 38, 87, 186, 440, 462, 608
DpnII	GATC	7 cut(s)	21, 36, 85, 184, 438, 460, 606
EaeI	YGGCCR	1 cut(s)	57
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	351
Eco147I	AGGCCT	1 cut(s)	363
Eco47III	AGCGCT	2 cut(s)	75, 508
Eco57I	CTGAAG	1 cut(s)	523
Eco81I	CCTNAGG	1 cut(s)	429
EcoRI	GAATTC	1 cut(s)	549
EcoRII	CCWGG	1 cut(s)	564
EcoT14I	CCWWGG	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	351
FaeI	CATG	2 cut(s)	226, 271
FatI	CATG	2 cut(s)	222, 267
FauI	CCCGC	1 cut(s)	317
FbaI	TGATCA	2 cut(s)	36, 184
Fnu4HI	GCNGC	2 cut(s)	175, 489
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	2 cut(s)	175, 489
FspBI	CTAG	2 cut(s)	77, 510
GlaI	GCGC	3 cut(s)	75, 502, 508
GluI	GCNGC	2 cut(s)	175, 489
GsuI	CTGGAG	2 cut(s)	49, 429
HaeII	RGCGCY	2 cut(s)	77, 510
HaeIII	GGCC	4 cut(s)	59, 249, 363, 618
HapII	CCGG	1 cut(s)	324
HhaI	GCGC	3 cut(s)	76, 503, 509
Hin1II	CATG	2 cut(s)	226, 271
Hin6I	GCGC	3 cut(s)	74, 501, 507
HinP1I	GCGC	3 cut(s)	74, 501, 507
HindIII	AAGCTT	1 cut(s)	398
HinfI	GANTC	3 cut(s)	168, 317, 371
HpaII	CCGG	1 cut(s)	324
HphI	GGTGA	1 cut(s)	46
Hpy188I	TCNGA	2 cut(s)	103, 285
Hpy188III	TCNNGA	4 cut(s)	66, 89, 546, 554
HpyAV	CCTTC	1 cut(s)	211
HpyCH4III	ACNGT	3 cut(s)	139, 517, 598
HpyCH4V	TGCA	2 cut(s)	488, 521
HpyF10VI	GCNNNNNNNGC	3 cut(s)	215, 488, 527
HpyF3I	CTNAG	1 cut(s)	429
Hsp92II	CATG	2 cut(s)	226, 271
HspAI	GCGC	3 cut(s)	74, 501, 507
Ksp22I	TGATCA	2 cut(s)	36, 184
KspI	CCGCGG	1 cut(s)	175
Kzo9I	GATC	7 cut(s)	21, 36, 85, 184, 438, 460, 606
LguI	GCTCTTC	1 cut(s)	64
Lsp1109I	GCAGC	1 cut(s)	500
LweI	GCATC	1 cut(s)	133
MaeI	CTAG	2 cut(s)	77, 510
MalI	GATC	7 cut(s)	23, 38, 87, 186, 440, 462, 608
MboI	GATC	7 cut(s)	21, 36, 85, 184, 438, 460, 606
MboII	GAAGA	4 cut(s)	81, 145, 529, 616
MflI	RGATCY	1 cut(s)	460
MlsI	TGGCCA	1 cut(s)	59
MluCI	AATT	7 cut(s)	26, 48, 275, 366, 466, 549, 625
MluNI	TGGCCA	1 cut(s)	59
MlyI	GAGTC	2 cut(s)	311, 365
MnlI	CCTC	4 cut(s)	157, 291, 312, 541
Mox20I	TGGCCA	1 cut(s)	59
MscI	TGGCCA	1 cut(s)	59
MseI	TTAA	2 cut(s)	579, 628
Msp20I	TGGCCA	1 cut(s)	59
MspA1I	CMGCKG	1 cut(s)	174
MspI	CCGG	1 cut(s)	324
MspR9I	CCNGG	2 cut(s)	325, 566
MvaI	CCWGG	1 cut(s)	566
MvnI	CGCG	2 cut(s)	174, 458
MwoI	GCNNNNNNNGC	3 cut(s)	215, 488, 527
NciI	CCSGG	1 cut(s)	325
NdeII	GATC	7 cut(s)	21, 36, 85, 184, 438, 460, 606
NheI	GCTAGC	1 cut(s)	76
NlaIII	CATG	2 cut(s)	226, 271
NlaIV	GGNNCC	2 cut(s)	349, 462
PceI	AGGCCT	1 cut(s)	363
PciSI	GCTCTTC	1 cut(s)	64
PfeI	GAWTC	1 cut(s)	168
PflMI	CCANNNNNTGG	1 cut(s)	31
PkrI	GCNGC	2 cut(s)	176, 490
PleI	GAGTC	2 cut(s)	311, 365
PpsI	GAGTC	2 cut(s)	311, 365
Psp6I	CCWGG	1 cut(s)	564
PspGI	CCWGG	1 cut(s)	564
PspN4I	GGNNCC	2 cut(s)	349, 462
PstNI	CAGNNNCTG	1 cut(s)	479
PsuI	RGATCY	1 cut(s)	460
RsaI	GTAC	2 cut(s)	452, 595
RsaNI	GTAC	2 cut(s)	451, 594
SacII	CCGCGG	1 cut(s)	175
SapI	GCTCTTC	1 cut(s)	64
SaqAI	TTAA	2 cut(s)	579, 628
SatI	GCNGC	2 cut(s)	175, 489
Sau3AI	GATC	7 cut(s)	21, 36, 85, 184, 438, 460, 606
SchI	GAGTC	2 cut(s)	311, 365
ScrFI	CCNGG	2 cut(s)	325, 566
SetI	ASST	5 cut(s)	203, 304, 402, 409, 545
SfaNI	GCATC	1 cut(s)	133
Sfr303I	CCGCGG	1 cut(s)	175
SgrBI	CCGCGG	1 cut(s)	175
Sse9I	AATT	7 cut(s)	26, 48, 275, 366, 466, 549, 625
SseBI	AGGCCT	1 cut(s)	363
SsiI	CCGC	4 cut(s)	172, 174, 310, 458
SspMI	CTAG	2 cut(s)	77, 510
StuI	AGGCCT	1 cut(s)	363
StyD4I	CCNGG	2 cut(s)	323, 564
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	3 cut(s)	139, 517, 598
TaqI	TCGA	1 cut(s)	374
TasI	AATT	7 cut(s)	26, 48, 275, 366, 466, 549, 625
TatI	WGTACW	1 cut(s)	450
TauI	GCSGC	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	168
Tru1I	TTAA	2 cut(s)	579, 628
Tru9I	TTAA	2 cut(s)	579, 628
TscAI	CASTG	1 cut(s)	484
TseI	GCWGC	1 cut(s)	488
TspRI	CASTG	1 cut(s)	484
Van91I	CCANNNNNTGG	1 cut(s)	31
XapI	RAATTY	1 cut(s)	549
XspI	CTAG	2 cut(s)	77, 510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.