Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004244

Physical Location & Seq

Genomic Coordinates Forward (+)

16920605 .. 16921195

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G111000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGATATTTGCATTTGCTCTGCCAACCTTCAAAAGGGCAGTAGCAAGTGATCCTGATATCATTTCTGACTTTATAGTCCCACCGAATTTCAACGGCACAATTGATGGATCGTTTTTCACTTTCACTGGATTTCGTGGAATTTTCGATCAAGCTCCCGAAACTTTTAAGGGATCGAAAGCAAGCCTAGTTGAGTTCCCTGCCCTTACTGGCCGGAGTGTGTCATATGCAGTGCTTCAGTTTCCTCCAAACACACTATTCCCACCTCACACCCGCCCAGACGCAACTGGACTTTTGTTCCTTGTTGATGGTACCTTGGAAGTAGGCCTAATCGACACGAAAAACAATCTATACACTCAAAAGCTTCAAACTGGAGATCTGTTTATTTTTCCCAAGGGATTAGTTCATTATCAGTATAATTCAGACCTTCGAAGACCAGCCACAGCCATTGCAGCATTCGGAAGTTCAAGTGCTAGAGCAGTTACAGTGCCGCCGGCTATTTTTACCATGGGCATTGATGATGCCATTCTTGCCAAATCATTCAAGACTGATGTTAGTACCATAGAGAAGATCAAGGCTGGCTTCACCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016197 GO:0019538 GO:0019941 GO:0030163 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

197

Amino Acids

21.27

Weight (kDa)

6.72

Isoelectric Point (pI)

32.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004244)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g08370 FvH4_7g08383 FvH4_7g08390
malus_domestica	MD07G1084100.v1.1
prunus_persica	Prupe.2G111000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0340191 RchiOBHm_Chr1g0340211 RchiOBHm_Chr1g0340251
rosa_laevigata	RLG00000029004 RLG00000029005 RLG00000029007
rosa_multiflora	Rmu_co8401649.1_g000001 Rmu_sc0001836.1_g000001 Rmu_sc0001836.1_g000002 Rmu_sc0001836.1_g000005 Rmu_sc0005193.1_g000011 Rmu_sc0005193.1_g000016 Rmu_sc0005193.1_g000018
rosa_roxburghii	Rroxscaffold_4G00311090
rosa_rugosa	Rorug01G0164700.1 Rorug01G0165000 Rorug01G0165100
rosa_samantha	Rh1AG179300 Rh1AG179700 Rh1BG147500 Rh1BG147700 Rh1BG147900 Rh1CG166200 Rh1DG179400 Rh1DG179500 Rh1DG179900
rosa_wichuraiana	Rw1G014940 Rw1G014960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
Acc65I	GGTACC	1 cut(s)	308
AccB1I	GGYRCC	1 cut(s)	308
AciI	CCGC	2 cut(s)	271, 488
AclWI	GGATC	3 cut(s)	44, 115, 178
AcoI	YGGCCR	1 cut(s)	208
AcsI	RAATTY	2 cut(s)	85, 138
AcuI	CTGAAG	1 cut(s)	218
AfaI	GTAC	2 cut(s)	310, 556
AfiI	CCNNNNNNNGG	1 cut(s)	33
AgsI	TTSAA	5 cut(s)	31, 91, 365, 465, 541
AluBI	AGCT	2 cut(s)	152, 361
AluI	AGCT	2 cut(s)	152, 361
AlwI	GGATC	3 cut(s)	44, 115, 178
AoxI	GGCC	2 cut(s)	208, 322
ApeKI	GCWGC	1 cut(s)	449
ApoI	RAATTY	2 cut(s)	85, 138
Asp718I	GGTACC	1 cut(s)	308
AsuHPI	GGTGA	1 cut(s)	574
AsuII	TTCGAA	1 cut(s)	427
BanI	GGYRCC	1 cut(s)	308
BbsI	GAAGAC	1 cut(s)	436
BbvI	GCAGC	1 cut(s)	461
BccI	CCATC	2 cut(s)	98, 299
BceAI	ACGGC	1 cut(s)	109
BfaI	CTAG	3 cut(s)	185, 471, 589
BglII	AGATCT	1 cut(s)	373
BisI	GCNGC	2 cut(s)	450, 488
BlsI	GCNGC	2 cut(s)	451, 489
BmiI	GGNNCC	1 cut(s)	310
BmsI	GCATC	1 cut(s)	508
BpiI	GAAGAC	1 cut(s)	436
BpmI	CTGGAG	1 cut(s)	390
Bpu14I	TTCGAA	1 cut(s)	427
BsaJI	CCNNGG	3 cut(s)	312, 390, 504
Bsc4I	CCNNNNNNNGG	1 cut(s)	33
Bse118I	RCCGGY	1 cut(s)	490
Bse1I	ACTGG	4 cut(s)	130, 211, 289, 373
Bse3DI	GCAATG	1 cut(s)	444
BseDI	CCNNGG	3 cut(s)	312, 390, 504
BseLI	CCNNNNNNNGG	1 cut(s)	33
BseMI	GCAATG	1 cut(s)	444
BseNI	ACTGG	4 cut(s)	130, 211, 289, 373
BseXI	GCAGC	1 cut(s)	461
BshFI	GGCC	2 cut(s)	210, 324
BshNI	GGYRCC	1 cut(s)	308
BsiSI	CCGG	2 cut(s)	211, 491
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	33
BsmFI	GGGAC	1 cut(s)	62
BsmI	GAATGC	1 cut(s)	452
BsnI	GGCC	2 cut(s)	210, 324
Bsp119I	TTCGAA	1 cut(s)	427
Bsp143I	GATC	6 cut(s)	49, 107, 145, 170, 373, 567
Bsp19I	CCATGG	1 cut(s)	504
BspACI	CCGC	2 cut(s)	271, 488
BspANI	GGCC	2 cut(s)	210, 324
BspLI	GGNNCC	1 cut(s)	310
BspPI	GGATC	3 cut(s)	44, 115, 178
BspT104I	TTCGAA	1 cut(s)	427
BspT107I	GGYRCC	1 cut(s)	308
BsrDI	GCAATG	1 cut(s)	444
BsrFI	RCCGGY	1 cut(s)	490
BsrI	ACTGG	4 cut(s)	130, 211, 289, 373
BssAI	RCCGGY	1 cut(s)	490
BssECI	CCNNGG	3 cut(s)	312, 390, 504
BssMI	GATC	6 cut(s)	49, 107, 145, 170, 373, 567
BssT1I	CCWWGG	3 cut(s)	312, 390, 504
Bst4CI	ACNGT	1 cut(s)	484
BstBI	TTCGAA	1 cut(s)	427
BstC8I	GCNNGC	3 cut(s)	181, 492, 577
BstDSI	CCRYGG	1 cut(s)	504
BstENI	CCTNNNNNAGG	1 cut(s)	31
BstKTI	GATC	6 cut(s)	52, 110, 148, 173, 376, 570
BstMBI	GATC	6 cut(s)	49, 107, 145, 170, 373, 567
BstMWI	GCNNNNNNNGC	2 cut(s)	449, 527
BstV1I	GCAGC	1 cut(s)	461
BstV2I	GAAGAC	1 cut(s)	436
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
BsuRI	GGCC	2 cut(s)	210, 324
BtgI	CCRYGG	1 cut(s)	504
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	3 cut(s)	123, 234, 489
Cac8I	GCNNGC	3 cut(s)	181, 492, 577
Cfr10I	RCCGGY	1 cut(s)	490
CseI	GACGC	1 cut(s)	287
Csp6I	GTAC	2 cut(s)	309, 555
CspCI	CAANNNNNGTGG	2 cut(s)	427, 462
CviAII	CATG	1 cut(s)	505
CviQI	GTAC	2 cut(s)	309, 555
DpnI	GATC	6 cut(s)	51, 109, 147, 172, 375, 569
DpnII	GATC	6 cut(s)	49, 107, 145, 170, 373, 567
DrdI	GACNNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	74
EaeI	YGGCCR	1 cut(s)	208
Eco130I	CCWWGG	3 cut(s)	312, 390, 504
Eco147I	AGGCCT	1 cut(s)	324
Eco32I	GATATC	1 cut(s)	58
Eco57I	CTGAAG	1 cut(s)	218
EcoNI	CCTNNNNNAGG	1 cut(s)	31
EcoRV	GATATC	1 cut(s)	58
EcoT14I	CCWWGG	3 cut(s)	312, 390, 504
ErhI	CCWWGG	3 cut(s)	312, 390, 504
FaeI	CATG	1 cut(s)	508
FaiI	YATR	7 cut(s)	74, 223, 225, 349, 414, 506, 560
FalI	AAGNNNNNCTT	1 cut(s)	563
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	1 cut(s)	504
FauI	CCCGC	1 cut(s)	278
FauNDI	CATATG	1 cut(s)	223
Fnu4HI	GCNGC	2 cut(s)	450, 488
Fsp4HI	GCNGC	2 cut(s)	450, 488
FspBI	CTAG	3 cut(s)	185, 471, 589
GluI	GCNGC	2 cut(s)	450, 488
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	2 cut(s)	210, 324
HapII	CCGG	2 cut(s)	211, 491
HgaI	GACGC	1 cut(s)	287
Hin1II	CATG	1 cut(s)	508
HindIII	AAGCTT	1 cut(s)	359
HpaII	CCGG	2 cut(s)	211, 491
HphI	GGTGA	1 cut(s)	574
Hpy188I	TCNGA	3 cut(s)	67, 421, 458
Hpy188III	TCNNGA	3 cut(s)	53, 155, 541
HpyAV	CCTTC	2 cut(s)	37, 434
HpyCH4III	ACNGT	1 cut(s)	484
HpyCH4V	TGCA	3 cut(s)	11, 227, 449
HpyF10VI	GCNNNNNNNGC	2 cut(s)	449, 527
Hsp92II	CATG	1 cut(s)	508
KpnI	GGTACC	1 cut(s)	312
KroI	GCCGGC	1 cut(s)	490
KroNI	GCCGGC	1 cut(s)	492
Kzo9I	GATC	6 cut(s)	49, 107, 145, 170, 373, 567
LmnI	GCTCC	1 cut(s)	157
Lsp1109I	GCAGC	1 cut(s)	461
LweI	GCATC	1 cut(s)	508
MaeI	CTAG	3 cut(s)	185, 471, 589
MaeIII	GTNAC	1 cut(s)	478
MalI	GATC	6 cut(s)	51, 109, 147, 172, 375, 569
MboI	GATC	6 cut(s)	49, 107, 145, 170, 373, 567
MboII	GAAGA	2 cut(s)	441, 577
MfeI	CAATTG	1 cut(s)	99
MflI	RGATCY	1 cut(s)	373
MluCI	AATT	4 cut(s)	85, 99, 138, 415
MnlI	CCTC	2 cut(s)	252, 273
MroNI	GCCGGC	1 cut(s)	490
MseI	TTAA	1 cut(s)	165
MspI	CCGG	2 cut(s)	211, 491
MunI	CAATTG	1 cut(s)	99
Mva1269I	GAATGC	1 cut(s)	452
MwoI	GCNNNNNNNGC	2 cut(s)	449, 527
NaeI	GCCGGC	1 cut(s)	492
NcoI	CCATGG	1 cut(s)	504
NdeI	CATATG	1 cut(s)	223
NdeII	GATC	6 cut(s)	49, 107, 145, 170, 373, 567
NgoMIV	GCCGGC	1 cut(s)	490
NlaIII	CATG	1 cut(s)	508
NlaIV	GGNNCC	1 cut(s)	310
NspV	TTCGAA	1 cut(s)	427
PceI	AGGCCT	1 cut(s)	324
PctI	GAATGC	1 cut(s)	452
PdiI	GCCGGC	1 cut(s)	492
PkrI	GCNGC	2 cut(s)	451, 489
PspN4I	GGNNCC	1 cut(s)	310
PsuI	RGATCY	1 cut(s)	373
RsaI	GTAC	2 cut(s)	310, 556
RsaNI	GTAC	2 cut(s)	309, 555
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	2 cut(s)	450, 488
Sau3AI	GATC	6 cut(s)	49, 107, 145, 170, 373, 567
SetI	ASST	6 cut(s)	29, 154, 265, 314, 363, 426
SfaNI	GCATC	1 cut(s)	508
SfuI	TTCGAA	1 cut(s)	427
Sse9I	AATT	4 cut(s)	85, 99, 138, 415
SseBI	AGGCCT	1 cut(s)	324
SsiI	CCGC	2 cut(s)	271, 488
SspMI	CTAG	3 cut(s)	185, 471, 589
StuI	AGGCCT	1 cut(s)	324
StyI	CCWWGG	3 cut(s)	312, 390, 504
TaaI	ACNGT	1 cut(s)	484
TaqI	TCGA	4 cut(s)	144, 173, 330, 427
TasI	AATT	4 cut(s)	85, 99, 138, 415
TauI	GCSGC	1 cut(s)	490
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TscAI	CASTG	3 cut(s)	130, 234, 489
TseI	GCWGC	1 cut(s)	449
TspDTI	ATGAA	1 cut(s)	392
TspRI	CASTG	3 cut(s)	130, 234, 489
XagI	CCTNNNNNAGG	1 cut(s)	31
XapI	RAATTY	2 cut(s)	85, 138
XspI	CTAG	3 cut(s)	185, 471, 589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.