Cupin domain
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g08370 FvH4_7g08383 FvH4_7g08390 |
| malus_domestica | MD07G1084100.v1.1 |
| prunus_persica | Prupe.2G111000_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr1g0340191 RchiOBHm_Chr1g0340211 RchiOBHm_Chr1g0340251 |
| rosa_laevigata | RLG00000029004 RLG00000029005 RLG00000029007 |
| rosa_multiflora | Rmu_co8401649.1_g000001 Rmu_sc0001836.1_g000001 Rmu_sc0001836.1_g000002 Rmu_sc0001836.1_g000005 Rmu_sc0005193.1_g000011 Rmu_sc0005193.1_g000016 Rmu_sc0005193.1_g000018 |
| rosa_roxburghii | Rroxscaffold_4G00311090 |
| rosa_rugosa | Rorug01G0164700.1 Rorug01G0165000 Rorug01G0165100 |
| rosa_samantha | Rh1AG179300 Rh1AG179700 Rh1BG147500 Rh1BG147700 Rh1BG147900 Rh1CG166200 Rh1DG179400 Rh1DG179500 Rh1DG179900 |
| rosa_wichuraiana | Rw1G014940 Rw1G014960 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 307, 477 |
| AclWI | GGATC | 2 cut(s) | 83, 452 |
| AcoI | YGGCCR | 2 cut(s) | 60, 244 |
| AcsI | RAATTY | 1 cut(s) | 488 |
| AcuI | CTGAAG | 1 cut(s) | 383 |
| AfaI | GTAC | 1 cut(s) | 51 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 72 |
| AgsI | TTSAA | 3 cut(s) | 202, 272, 577 |
| AluBI | AGCT | 3 cut(s) | 397, 473, 624 |
| AluI | AGCT | 3 cut(s) | 397, 473, 624 |
| Alw21I | GWGCWC | 1 cut(s) | 287 |
| Alw26I | GTCTC | 1 cut(s) | 165 |
| AlwI | GGATC | 2 cut(s) | 83, 452 |
| Ama87I | CYCGRG | 1 cut(s) | 541 |
| AoxI | GGCC | 3 cut(s) | 60, 244, 613 |
| ApoI | RAATTY | 1 cut(s) | 488 |
| AseI | ATTAAT | 1 cut(s) | 26 |
| AvaI | CYCGRG | 1 cut(s) | 541 |
| AxyI | CCTNAGG | 1 cut(s) | 426 |
| BalI | TGGCCA | 2 cut(s) | 62, 246 |
| Bbv12I | GWGCWC | 1 cut(s) | 287 |
| BceAI | ACGGC | 1 cut(s) | 248 |
| BclI | TGATCA | 2 cut(s) | 39, 181 |
| BcoDI | GTCTC | 1 cut(s) | 165 |
| BfaI | CTAG | 3 cut(s) | 507, 621, 625 |
| BmcAI | AGTACT | 1 cut(s) | 51 |
| BmeT110I | CYCGRG | 1 cut(s) | 541 |
| BmiI | GGNNCC | 1 cut(s) | 346 |
| BmsI | GCATC | 1 cut(s) | 304 |
| BsaBI | GATNNNNATC | 1 cut(s) | 38 |
| BsaJI | CCNNGG | 2 cut(s) | 348, 540 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 72 |
| Bse118I | RCCGGY | 1 cut(s) | 341 |
| Bse1I | ACTGG | 2 cut(s) | 166, 325 |
| Bse21I | CCTNAGG | 1 cut(s) | 426 |
| Bse3DI | GCAATG | 1 cut(s) | 480 |
| Bse8I | GATNNNNATC | 1 cut(s) | 38 |
| BseDI | CCNNGG | 2 cut(s) | 348, 540 |
| BseGI | GGATG | 1 cut(s) | 558 |
| BseJI | GATNNNNATC | 1 cut(s) | 38 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 72 |
| BseMI | GCAATG | 1 cut(s) | 480 |
| BseMII | CTCAG | 1 cut(s) | 476 |
| BseNI | ACTGG | 2 cut(s) | 166, 325 |
| BshFI | GGCC | 3 cut(s) | 62, 246, 615 |
| BsiHKAI | GWGCWC | 1 cut(s) | 287 |
| BsiHKCI | CYCGRG | 1 cut(s) | 541 |
| BsiSI | CCGG | 1 cut(s) | 342 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 72 |
| BsmAI | GTCTC | 1 cut(s) | 165 |
| BsmBI | CGTCTC | 1 cut(s) | 165 |
| BsnI | GGCC | 3 cut(s) | 62, 246, 615 |
| BsoBI | CYCGRG | 1 cut(s) | 541 |
| Bsp1286I | GDGCHC | 1 cut(s) | 287 |
| Bsp143I | GATC | 4 cut(s) | 39, 88, 181, 457 |
| BspACI | CCGC | 2 cut(s) | 307, 477 |
| BspANI | GGCC | 3 cut(s) | 62, 246, 615 |
| BspCNI | CTCAG | 1 cut(s) | 475 |
| BspLI | GGNNCC | 1 cut(s) | 346 |
| BspPI | GGATC | 2 cut(s) | 83, 452 |
| BsrDI | GCAATG | 1 cut(s) | 480 |
| BsrFI | RCCGGY | 1 cut(s) | 341 |
| BsrI | ACTGG | 2 cut(s) | 166, 325 |
| BssAI | RCCGGY | 1 cut(s) | 341 |
| BssECI | CCNNGG | 2 cut(s) | 348, 540 |
| BssMI | GATC | 4 cut(s) | 39, 88, 181, 457 |
| BssT1I | CCWWGG | 1 cut(s) | 348 |
| Bst4CI | ACNGT | 3 cut(s) | 136, 291, 520 |
| BstC8I | GCNNGC | 3 cut(s) | 217, 471, 613 |
| BstDEI | CTNAG | 3 cut(s) | 79, 426, 462 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 70 |
| BstF5I | GGATG | 1 cut(s) | 558 |
| BstKTI | GATC | 4 cut(s) | 42, 91, 184, 460 |
| BstMAI | GTCTC | 1 cut(s) | 165 |
| BstMBI | GATC | 4 cut(s) | 39, 88, 181, 457 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 212, 621 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 223 |
| Bsu36I | CCTNAGG | 1 cut(s) | 426 |
| BsuRI | GGCC | 3 cut(s) | 62, 246, 615 |
| BtsCI | GGATG | 1 cut(s) | 558 |
| BtsIMutI | CAGTG | 3 cut(s) | 159, 287, 318 |
| Cac8I | GCNNGC | 3 cut(s) | 217, 471, 613 |
| Cfr10I | RCCGGY | 1 cut(s) | 341 |
| Csp6I | GTAC | 1 cut(s) | 50 |
| CviQI | GTAC | 1 cut(s) | 50 |
| DdeI | CTNAG | 3 cut(s) | 79, 426, 462 |
| DpnI | GATC | 4 cut(s) | 41, 90, 183, 459 |
| DpnII | GATC | 4 cut(s) | 39, 88, 181, 457 |
| EaeI | YGGCCR | 2 cut(s) | 60, 244 |
| Eco130I | CCWWGG | 1 cut(s) | 348 |
| Eco32I | GATATC | 1 cut(s) | 412 |
| Eco57I | CTGAAG | 1 cut(s) | 383 |
| Eco81I | CCTNAGG | 1 cut(s) | 426 |
| Eco88I | CYCGRG | 1 cut(s) | 541 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 70 |
| EcoRI | GAATTC | 1 cut(s) | 488 |
| EcoRV | GATATC | 1 cut(s) | 412 |
| EcoT14I | CCWWGG | 1 cut(s) | 348 |
| ErhI | CCWWGG | 1 cut(s) | 348 |
| Esp3I | CGTCTC | 1 cut(s) | 165 |
| FauI | CCCGC | 1 cut(s) | 314 |
| FauNDI | CATATG | 1 cut(s) | 259 |
| FbaI | TGATCA | 2 cut(s) | 39, 181 |
| FokI | GGATG | 1 cut(s) | 545 |
| FspBI | CTAG | 3 cut(s) | 507, 621, 625 |
| HaeIII | GGCC | 3 cut(s) | 62, 246, 615 |
| HapII | CCGG | 1 cut(s) | 342 |
| HindIII | AAGCTT | 1 cut(s) | 395 |
| HinfI | GANTC | 1 cut(s) | 165 |
| HpaII | CCGG | 1 cut(s) | 342 |
| Hpy188I | TCNGA | 5 cut(s) | 106, 170, 282, 457, 494 |
| Hpy188III | TCNNGA | 2 cut(s) | 92, 577 |
| HpyAV | CCTTC | 3 cut(s) | 208, 344, 537 |
| HpyCH4III | ACNGT | 3 cut(s) | 136, 291, 520 |
| HpyCH4IV | ACGT | 2 cut(s) | 174, 585 |
| HpyCH4V | TGCA | 2 cut(s) | 485, 500 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 212, 621 |
| HpyF3I | CTNAG | 3 cut(s) | 79, 426, 462 |
| HpySE526I | ACGT | 2 cut(s) | 174, 585 |
| Ksp22I | TGATCA | 2 cut(s) | 39, 181 |
| Kzo9I | GATC | 4 cut(s) | 39, 88, 181, 457 |
| LweI | GCATC | 1 cut(s) | 304 |
| MaeI | CTAG | 3 cut(s) | 507, 621, 625 |
| MaeII | ACGT | 2 cut(s) | 174, 585 |
| MaeIII | GTNAC | 1 cut(s) | 514 |
| MalI | GATC | 4 cut(s) | 41, 90, 183, 459 |
| MboI | GATC | 4 cut(s) | 39, 88, 181, 457 |
| MboII | GAAGA | 1 cut(s) | 613 |
| MhlI | GDGCHC | 1 cut(s) | 287 |
| MlsI | TGGCCA | 2 cut(s) | 62, 246 |
| MluCI | AATT | 3 cut(s) | 272, 363, 488 |
| MluNI | TGGCCA | 2 cut(s) | 62, 246 |
| MmeI | TCCRAC | 1 cut(s) | 385 |
| MnlI | CCTC | 8 cut(s) | 6, 76, 129, 288, 309, 471, 550, 626 |
| Mox20I | TGGCCA | 2 cut(s) | 62, 246 |
| MscI | TGGCCA | 2 cut(s) | 62, 246 |
| MseI | TTAA | 5 cut(s) | 26, 138, 434, 597, 606 |
| Msp20I | TGGCCA | 2 cut(s) | 62, 246 |
| MspI | CCGG | 1 cut(s) | 342 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 212, 621 |
| NdeI | CATATG | 1 cut(s) | 259 |
| NdeII | GATC | 4 cut(s) | 39, 88, 181, 457 |
| NlaIV | GGNNCC | 1 cut(s) | 346 |
| PfeI | GAWTC | 1 cut(s) | 165 |
| PflFI | GACNNNGTC | 1 cut(s) | 554 |
| PshBI | ATTAAT | 1 cut(s) | 26 |
| PspN4I | GGNNCC | 1 cut(s) | 346 |
| PsyI | GACNNNGTC | 1 cut(s) | 554 |
| RsaI | GTAC | 1 cut(s) | 51 |
| RsaNI | GTAC | 1 cut(s) | 50 |
| SaqAI | TTAA | 5 cut(s) | 26, 138, 434, 597, 606 |
| Sau3AI | GATC | 4 cut(s) | 39, 88, 181, 457 |
| ScaI | AGTACT | 1 cut(s) | 51 |
| SduI | GDGCHC | 1 cut(s) | 287 |
| SfaNI | GCATC | 1 cut(s) | 304 |
| Sse9I | AATT | 3 cut(s) | 272, 363, 488 |
| SsiI | CCGC | 2 cut(s) | 307, 477 |
| SspMI | CTAG | 3 cut(s) | 507, 621, 625 |
| StyI | CCWWGG | 1 cut(s) | 348 |
| TaaI | ACNGT | 3 cut(s) | 136, 291, 520 |
| TaiI | ACGT | 2 cut(s) | 177, 588 |
| TaqI | TCGA | 1 cut(s) | 22 |
| TasI | AATT | 3 cut(s) | 272, 363, 488 |
| TatI | WGTACW | 1 cut(s) | 49 |
| TfiI | GAWTC | 1 cut(s) | 165 |
| Tru1I | TTAA | 5 cut(s) | 26, 138, 434, 597, 606 |
| Tru9I | TTAA | 5 cut(s) | 26, 138, 434, 597, 606 |
| TscAI | CASTG | 3 cut(s) | 166, 294, 325 |
| TspRI | CASTG | 3 cut(s) | 166, 294, 325 |
| Tth111I | GACNNNGTC | 1 cut(s) | 554 |
| VspI | ATTAAT | 1 cut(s) | 26 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 70 |
| XapI | RAATTY | 1 cut(s) | 488 |
| XspI | CTAG | 3 cut(s) | 507, 621, 625 |
| ZrmI | AGTACT | 1 cut(s) | 51 |