Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004244

Physical Location & Seq

Genomic Coordinates Reverse (-)

31322643 .. 31323257

Gene Structure 615 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029007

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGAGGTTGGTTCAATTACTGATGATGACAATATTAGTTCTTGCTCTGGCCACCTCCAAAAGGGTCTTGGCAAGTGATCCGGATATCCTTTCGGACTTTTTACTCCCACAAAACAGCTCAACAGTTGATGCTAGTTTTTTTACATTCACTGGATTTCGCGGAATATTTGATCAAGCACCCAAAACCTTGAAGACAACAAAAGCCAGCATGGTTGAGTTTCCTGCTCTCAATGGCCAGAGTGTGTCATACGCGGTGCTTCAATTGCGTCCACAGACACTCTTCCCACCTCATACTCGCCCTGATGCAACTGGACTTCTGTTCCTTTTAGATGGTTCCTTGGAAGTAGGCCTAATAGACACAAAAAATAATCTGTATACTCAAAAGCTTCAGGCTGGAGATATGTTTGTATTTCCCAAGGGATTAATACATTATCAGTATAACACTGATTCTCAATTGCCAGCCACTGCCATTGCAGCATTCGGAAGTGCAAGTGCTAGAGCAGTTGCAGTGCCACCTTCTGTTTTTGCTTCAGGTATTGACGATGTCATCCTTGCCAAATCCTTCAAGACAGATGTTGATACTATTAAGAAGATTAAGGCTAGCCTCACTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016197 GO:0019538 GO:0019941 GO:0030163 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

205

Amino Acids

22.05

Weight (kDa)

8.83

Isoelectric Point (pI)

30.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	63 - 195	1.3e-27	Cupin
Cupin_2	PF07883	86 - 158	6.4e-08	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004244)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g08370 FvH4_7g08383 FvH4_7g08390
malus_domestica	MD07G1084100.v1.1
prunus_persica	Prupe.2G111000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0340191 RchiOBHm_Chr1g0340211 RchiOBHm_Chr1g0340251
rosa_laevigata	RLG00000029004 RLG00000029005 RLG00000029007
rosa_multiflora	Rmu_co8401649.1_g000001 Rmu_sc0001836.1_g000001 Rmu_sc0001836.1_g000002 Rmu_sc0001836.1_g000005 Rmu_sc0005193.1_g000011 Rmu_sc0005193.1_g000016 Rmu_sc0005193.1_g000018
rosa_roxburghii	Rroxscaffold_4G00311090
rosa_rugosa	Rorug01G0164700.1 Rorug01G0165000 Rorug01G0165100
rosa_samantha	Rh1AG179300 Rh1AG179700 Rh1BG147500 Rh1BG147700 Rh1BG147900 Rh1CG166200 Rh1DG179400 Rh1DG179500 Rh1DG179900
rosa_wichuraiana	Rw1G014940 Rw1G014960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	374
AccII	CGCG	2 cut(s)	159, 251
AccIII	TCCGGA	1 cut(s)	79
AciI	CCGC	2 cut(s)	159, 251
AclWI	GGATC	1 cut(s)	71
AcoI	YGGCCR	2 cut(s)	48, 232
AcuI	CTGAAG	2 cut(s)	371, 513
AfiI	CCNNNNNNNGG	1 cut(s)	60
AgsI	TTSAA	4 cut(s)	14, 190, 260, 565
AluBI	AGCT	3 cut(s)	117, 385, 612
AluI	AGCT	3 cut(s)	117, 385, 612
AlwI	GGATC	1 cut(s)	71
AlwNI	CAGNNNCTG	1 cut(s)	464
Aor13HI	TCCGGA	1 cut(s)	79
AoxI	GGCC	3 cut(s)	48, 232, 346
ApeKI	GCWGC	1 cut(s)	473
AseI	ATTAAT	1 cut(s)	422
AsuNHI	GCTAGC	1 cut(s)	599
BalI	TGGCCA	2 cut(s)	50, 234
BbsI	GAAGAC	1 cut(s)	197
BbvI	GCAGC	1 cut(s)	485
BccI	CCATC	1 cut(s)	323
BclI	TGATCA	1 cut(s)	169
BfaI	CTAG	4 cut(s)	132, 495, 600, 609
BisI	GCNGC	1 cut(s)	474
BlsI	GCNGC	1 cut(s)	475
BmiI	GGNNCC	1 cut(s)	334
BmsI	GCATC	2 cut(s)	118, 292
BmtI	GCTAGC	1 cut(s)	603
BpiI	GAAGAC	1 cut(s)	197
BpmI	CTGGAG	1 cut(s)	414
BsaJI	CCNNGG	2 cut(s)	336, 414
BsaWI	WCCGGW	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
Bse1I	ACTGG	2 cut(s)	154, 313
Bse3DI	GCAATG	1 cut(s)	468
BseAI	TCCGGA	1 cut(s)	79
BseDI	CCNNGG	2 cut(s)	336, 414
BseGI	GGATG	1 cut(s)	546
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseMI	GCAATG	1 cut(s)	468
BseNI	ACTGG	2 cut(s)	154, 313
BseXI	GCAGC	1 cut(s)	485
Bsh1236I	CGCG	2 cut(s)	159, 251
BshFI	GGCC	3 cut(s)	50, 234, 348
BsiSI	CCGG	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	60
BsmI	GAATGC	1 cut(s)	476
BsnI	GGCC	3 cut(s)	50, 234, 348
Bsp13I	TCCGGA	1 cut(s)	79
Bsp143I	GATC	2 cut(s)	76, 169
BspACI	CCGC	2 cut(s)	159, 251
BspANI	GGCC	3 cut(s)	50, 234, 348
BspEI	TCCGGA	1 cut(s)	79
BspFNI	CGCG	2 cut(s)	159, 251
BspLI	GGNNCC	1 cut(s)	334
BspOI	GCTAGC	1 cut(s)	603
BspPI	GGATC	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	468
BsrI	ACTGG	2 cut(s)	154, 313
BssECI	CCNNGG	2 cut(s)	336, 414
BssMI	GATC	2 cut(s)	76, 169
BssNAI	GTATAC	1 cut(s)	375
BssT1I	CCWWGG	2 cut(s)	336, 414
Bst1107I	GTATAC	1 cut(s)	375
Bst4CI	ACNGT	1 cut(s)	124
Bst6I	CTCTTC	1 cut(s)	284
BstC8I	GCNNGC	3 cut(s)	205, 459, 601
BstENI	CCTNNNNNAGG	1 cut(s)	58
BstF5I	GGATG	1 cut(s)	546
BstFNI	CGCG	2 cut(s)	159, 251
BstKTI	GATC	2 cut(s)	79, 172
BstMBI	GATC	2 cut(s)	76, 169
BstMWI	GCNNNNNNNGC	3 cut(s)	262, 473, 609
BstUI	CGCG	2 cut(s)	159, 251
BstV1I	GCAGC	1 cut(s)	485
BstV2I	GAAGAC	1 cut(s)	197
BstZ17I	GTATAC	1 cut(s)	375
BsuRI	GGCC	3 cut(s)	50, 234, 348
BtsCI	GGATG	1 cut(s)	546
BtsI	GCAGTG	2 cut(s)	462, 513
BtsIMutI	CAGTG	4 cut(s)	147, 441, 462, 513
Cac8I	GCNNGC	3 cut(s)	205, 459, 601
CaiI	CAGNNNCTG	1 cut(s)	464
CseI	GACGC	1 cut(s)	254
CspCI	CAANNNNNGTGG	2 cut(s)	451, 486
CviAII	CATG	1 cut(s)	208
DpnI	GATC	2 cut(s)	78, 171
DpnII	GATC	2 cut(s)	76, 169
EaeI	YGGCCR	2 cut(s)	48, 232
Eam1104I	CTCTTC	1 cut(s)	284
EarI	CTCTTC	1 cut(s)	284
Eco130I	CCWWGG	2 cut(s)	336, 414
Eco147I	AGGCCT	1 cut(s)	348
Eco32I	GATATC	1 cut(s)	85
Eco57I	CTGAAG	2 cut(s)	371, 513
EcoNI	CCTNNNNNAGG	1 cut(s)	58
EcoRV	GATATC	1 cut(s)	85
EcoT14I	CCWWGG	2 cut(s)	336, 414
ErhI	CCWWGG	2 cut(s)	336, 414
FaeI	CATG	1 cut(s)	211
FaiI	YATR	6 cut(s)	209, 247, 291, 375, 401, 438
FatI	CATG	1 cut(s)	207
FbaI	TGATCA	1 cut(s)	169
FblI	GTMKAC	1 cut(s)	374
Fnu4HI	GCNGC	1 cut(s)	474
FokI	GGATG	1 cut(s)	533
Fsp4HI	GCNGC	1 cut(s)	474
FspBI	CTAG	4 cut(s)	132, 495, 600, 609
GluI	GCNGC	1 cut(s)	474
GsuI	CTGGAG	1 cut(s)	414
HaeIII	GGCC	3 cut(s)	50, 234, 348
HapII	CCGG	1 cut(s)	80
HgaI	GACGC	1 cut(s)	254
Hin1II	CATG	1 cut(s)	211
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	1 cut(s)	446
HpaII	CCGG	1 cut(s)	80
Hpy166II	GTNNAC	2 cut(s)	269, 375
Hpy188I	TCNGA	2 cut(s)	94, 482
Hpy188III	TCNNGA	2 cut(s)	80, 565
Hpy8I	GTNNAC	2 cut(s)	269, 375
HpyAV	CCTTC	2 cut(s)	525, 571
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4V	TGCA	4 cut(s)	305, 473, 488, 506
HpyF10VI	GCNNNNNNNGC	3 cut(s)	262, 473, 609
Hsp92II	CATG	1 cut(s)	211
Kpn2I	TCCGGA	1 cut(s)	79
Ksp22I	TGATCA	1 cut(s)	169
Kzo9I	GATC	2 cut(s)	76, 169
Lsp1109I	GCAGC	1 cut(s)	485
LweI	GCATC	2 cut(s)	118, 292
MaeI	CTAG	4 cut(s)	132, 495, 600, 609
MalI	GATC	2 cut(s)	78, 171
MboI	GATC	2 cut(s)	76, 169
MboII	GAAGA	3 cut(s)	202, 271, 601
MfeI	CAATTG	2 cut(s)	260, 452
MlsI	TGGCCA	2 cut(s)	50, 234
MluCI	AATT	3 cut(s)	14, 260, 452
MluNI	TGGCCA	2 cut(s)	50, 234
MnlI	CCTC	3 cut(s)	64, 297, 614
Mox20I	TGGCCA	2 cut(s)	50, 234
MroI	TCCGGA	1 cut(s)	79
MscI	TGGCCA	2 cut(s)	50, 234
MseI	TTAA	3 cut(s)	422, 585, 594
Msp20I	TGGCCA	2 cut(s)	50, 234
MspI	CCGG	1 cut(s)	80
MunI	CAATTG	2 cut(s)	260, 452
Mva1269I	GAATGC	1 cut(s)	476
MvnI	CGCG	2 cut(s)	159, 251
MwoI	GCNNNNNNNGC	3 cut(s)	262, 473, 609
NdeII	GATC	2 cut(s)	76, 169
NheI	GCTAGC	1 cut(s)	599
NlaIII	CATG	1 cut(s)	211
NlaIV	GGNNCC	1 cut(s)	334
PceI	AGGCCT	1 cut(s)	348
PctI	GAATGC	1 cut(s)	476
PfeI	GAWTC	1 cut(s)	446
PflFI	GACNNNGTC	1 cut(s)	542
PkrI	GCNGC	1 cut(s)	475
PshBI	ATTAAT	1 cut(s)	422
PspN4I	GGNNCC	1 cut(s)	334
PstNI	CAGNNNCTG	1 cut(s)	464
PsyI	GACNNNGTC	1 cut(s)	542
SaqAI	TTAA	3 cut(s)	422, 585, 594
SatI	GCNGC	1 cut(s)	474
Sau3AI	GATC	2 cut(s)	76, 169
SetI	ASST	9 cut(s)	8, 56, 119, 188, 289, 387, 517, 535, 614
SfaNI	GCATC	2 cut(s)	118, 292
Sse9I	AATT	3 cut(s)	14, 260, 452
SseBI	AGGCCT	1 cut(s)	348
SsiI	CCGC	2 cut(s)	159, 251
SspI	AATATT	2 cut(s)	33, 165
SspMI	CTAG	4 cut(s)	132, 495, 600, 609
StuI	AGGCCT	1 cut(s)	348
StyI	CCWWGG	2 cut(s)	336, 414
TaaI	ACNGT	1 cut(s)	124
TasI	AATT	3 cut(s)	14, 260, 452
TfiI	GAWTC	1 cut(s)	446
Tru1I	TTAA	3 cut(s)	422, 585, 594
Tru9I	TTAA	3 cut(s)	422, 585, 594
TscAI	CASTG	4 cut(s)	154, 448, 469, 513
TseI	GCWGC	1 cut(s)	473
TspRI	CASTG	4 cut(s)	154, 448, 469, 513
Tth111I	GACNNNGTC	1 cut(s)	542
VspI	ATTAAT	1 cut(s)	422
XagI	CCTNNNNNAGG	1 cut(s)	58
XcmI	CCANNNNNNNNNTGG	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	374
XspI	CTAG	4 cut(s)	132, 495, 600, 609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.