Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8401649.1

Orthogroup ID

OG0004244

Physical Location & Seq

Genomic Coordinates Forward (+)

534 .. 1163

Gene Structure 630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8401649.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

atggctatgactatgagactgatccaattactggtgatcatatcggtaattgctttggccatctccagaagagcgctggcaagtgatcctgacatcacttccgattacatactcccagaaaaccacaccagcacaactgctgatgcctcattcttcacatacacaggattccgcggcttatttgatcaagcacccaaaaccttcacggcaacaaaagcaagcatggatgagttccctgctctcaaaggccagagtgtgtcatacgccatgcttcaattccctccaaacacattattcccacctcacacccgccttgactctgccggacttatgtttgtccttactggttccttggaagtaggcctaattgactcgaaaaacattctatatactaaaaagcttcaagctggagatatgtttgtgtttcctaagggattgatccattatcagtacaacgccgatcctaatttgccagccactgccattgctgcatttggaagcgcaagtgctagaacagttgcagttccagcctctatcttcagctctggaattcgtgatgttgtcctggcaaaatcatttaagacagatgttagtaccgttaggaagatcagggctggcttaaaaaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

209

Amino Acids

22.62

Weight (kDa)

9.48

Isoelectric Point (pI)

34.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004244)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g08370 FvH4_7g08383 FvH4_7g08390
malus_domestica	MD07G1084100.v1.1
prunus_persica	Prupe.2G111000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0340191 RchiOBHm_Chr1g0340211 RchiOBHm_Chr1g0340251
rosa_laevigata	RLG00000029004 RLG00000029005 RLG00000029007
rosa_multiflora	Rmu_co8401649.1_g000001 Rmu_sc0001836.1_g000001 Rmu_sc0001836.1_g000002 Rmu_sc0001836.1_g000005 Rmu_sc0005193.1_g000011 Rmu_sc0005193.1_g000016 Rmu_sc0005193.1_g000018
rosa_roxburghii	Rroxscaffold_4G00311090
rosa_rugosa	Rorug01G0164700.1 Rorug01G0165000 Rorug01G0165100
rosa_samantha	Rh1AG179300 Rh1AG179700 Rh1BG147500 Rh1BG147700 Rh1BG147900 Rh1CG166200 Rh1DG179400 Rh1DG179500 Rh1DG179900
rosa_wichuraiana	Rw1G014940 Rw1G014960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	31
AccII	CGCG	1 cut(s)	174
AciI	CCGC	3 cut(s)	172, 174, 310
AclWI	GGATC	4 cut(s)	16, 80, 433, 455
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	1 cut(s)	549
AcuI	CTGAAG	1 cut(s)	523
AfaI	GTAC	2 cut(s)	452, 595
AfeI	AGCGCT	1 cut(s)	75
AfiI	CCNNNNNNNGG	1 cut(s)	31
AgsI	TTSAA	2 cut(s)	275, 404
AjnI	CCWGG	1 cut(s)	564
AluBI	AGCT	3 cut(s)	400, 407, 543
AluI	AGCT	3 cut(s)	400, 407, 543
Alw26I	GTCTC	1 cut(s)	10
AlwI	GGATC	4 cut(s)	16, 80, 433, 455
AlwNI	CAGNNNCTG	1 cut(s)	479
Aor51HI	AGCGCT	1 cut(s)	75
AoxI	GGCC	3 cut(s)	57, 247, 361
ApeKI	GCWGC	1 cut(s)	488
ApoI	RAATTY	1 cut(s)	549
AspLEI	GCGC	2 cut(s)	76, 503
AsuHPI	GGTGA	1 cut(s)	46
AxyI	CCTNAGG	1 cut(s)	429
BalI	TGGCCA	1 cut(s)	59
BbvI	GCAGC	1 cut(s)	475
BccI	CCATC	1 cut(s)	68
BceAI	ACGGC	1 cut(s)	222
BciT130I	CCWGG	1 cut(s)	566
BclI	TGATCA	2 cut(s)	36, 184
BcoDI	GTCTC	1 cut(s)	10
BfaI	CTAG	1 cut(s)	510
BfoI	RGCGCY	1 cut(s)	77
BisI	GCNGC	2 cut(s)	175, 489
BlsI	GCNGC	2 cut(s)	176, 490
Bme1390I	CCNGG	1 cut(s)	566
BmiI	GGNNCC	1 cut(s)	349
BmrFI	CCNGG	1 cut(s)	566
BmsI	GCATC	1 cut(s)	133
BpmI	CTGGAG	2 cut(s)	49, 429
BsaJI	CCNNGG	2 cut(s)	172, 351
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse1I	ACTGG	2 cut(s)	36, 349
Bse21I	CCTNAGG	1 cut(s)	429
Bse3DI	GCAATG	1 cut(s)	483
BseBI	CCWGG	1 cut(s)	566
BseDI	CCNNGG	2 cut(s)	172, 351
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMI	GCAATG	1 cut(s)	483
BseNI	ACTGG	2 cut(s)	36, 349
BseXI	GCAGC	1 cut(s)	475
Bsh1236I	CGCG	1 cut(s)	174
BshFI	GGCC	3 cut(s)	59, 249, 363
BsiSI	CCGG	1 cut(s)	324
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmAI	GTCTC	1 cut(s)	10
BsnI	GGCC	3 cut(s)	59, 249, 363
Bsp143I	GATC	7 cut(s)	21, 36, 85, 184, 438, 460, 606
BspACI	CCGC	3 cut(s)	172, 174, 310
BspANI	GGCC	3 cut(s)	59, 249, 363
BspFNI	CGCG	1 cut(s)	174
BspLI	GGNNCC	1 cut(s)	349
BspPI	GGATC	4 cut(s)	16, 80, 433, 455
BspQI	GCTCTTC	1 cut(s)	64
BsrDI	GCAATG	1 cut(s)	483
BsrI	ACTGG	2 cut(s)	36, 349
BssECI	CCNNGG	2 cut(s)	172, 351
BssMI	GATC	7 cut(s)	21, 36, 85, 184, 438, 460, 606
BssT1I	CCWWGG	1 cut(s)	351
Bst2UI	CCWGG	1 cut(s)	566
Bst4CI	ACNGT	2 cut(s)	517, 598
Bst6I	CTCTTC	1 cut(s)	64
BstC8I	GCNNGC	4 cut(s)	78, 220, 474, 616
BstDEI	CTNAG	1 cut(s)	429
BstDSI	CCRYGG	1 cut(s)	172
BstF5I	GGATG	1 cut(s)	232
BstFNI	CGCG	1 cut(s)	174
BstH2I	RGCGCY	1 cut(s)	77
BstHHI	GCGC	2 cut(s)	76, 503
BstKTI	GATC	7 cut(s)	24, 39, 88, 187, 441, 463, 609
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	7 cut(s)	21, 36, 85, 184, 438, 460, 606
BstMWI	GCNNNNNNNGC	3 cut(s)	215, 488, 527
BstNI	CCWGG	1 cut(s)	566
BstSCI	CCNGG	1 cut(s)	564
BstUI	CGCG	1 cut(s)	174
BstV1I	GCAGC	1 cut(s)	475
Bsu36I	CCTNAGG	1 cut(s)	429
BsuRI	GGCC	3 cut(s)	59, 249, 363
BtgI	CCRYGG	1 cut(s)	172
BtsCI	GGATG	1 cut(s)	232
BtsI	GCAGTG	1 cut(s)	477
BtsIMutI	CAGTG	1 cut(s)	477
Cac8I	GCNNGC	4 cut(s)	78, 220, 474, 616
CaiI	CAGNNNCTG	1 cut(s)	479
CfoI	GCGC	2 cut(s)	76, 503
Cfr42I	CCGCGG	1 cut(s)	175
Csp6I	GTAC	2 cut(s)	451, 594
CspCI	CAANNNNNGTGG	2 cut(s)	466, 501
CviAII	CATG	2 cut(s)	223, 268
CviQI	GTAC	2 cut(s)	451, 594
DdeI	CTNAG	1 cut(s)	429
DpnI	GATC	7 cut(s)	23, 38, 87, 186, 440, 462, 608
DpnII	GATC	7 cut(s)	21, 36, 85, 184, 438, 460, 606
EaeI	YGGCCR	1 cut(s)	57
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	351
Eco147I	AGGCCT	1 cut(s)	363
Eco47III	AGCGCT	1 cut(s)	75
Eco57I	CTGAAG	1 cut(s)	523
Eco81I	CCTNAGG	1 cut(s)	429
EcoRI	GAATTC	1 cut(s)	549
EcoRII	CCWGG	1 cut(s)	564
EcoT14I	CCWWGG	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	351
FaeI	CATG	2 cut(s)	226, 271
FatI	CATG	2 cut(s)	222, 267
FauI	CCCGC	1 cut(s)	317
FbaI	TGATCA	2 cut(s)	36, 184
Fnu4HI	GCNGC	2 cut(s)	175, 489
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	2 cut(s)	175, 489
FspBI	CTAG	1 cut(s)	510
GlaI	GCGC	2 cut(s)	75, 502
GluI	GCNGC	2 cut(s)	175, 489
GsuI	CTGGAG	2 cut(s)	49, 429
HaeII	RGCGCY	1 cut(s)	77
HaeIII	GGCC	3 cut(s)	59, 249, 363
HapII	CCGG	1 cut(s)	324
HhaI	GCGC	2 cut(s)	76, 503
Hin1II	CATG	2 cut(s)	226, 271
Hin6I	GCGC	2 cut(s)	74, 501
HinP1I	GCGC	2 cut(s)	74, 501
HindIII	AAGCTT	1 cut(s)	398
HinfI	GANTC	3 cut(s)	168, 317, 371
HpaII	CCGG	1 cut(s)	324
HphI	GGTGA	1 cut(s)	46
Hpy188I	TCNGA	1 cut(s)	103
Hpy188III	TCNNGA	4 cut(s)	66, 89, 546, 554
HpyAV	CCTTC	1 cut(s)	211
HpyCH4III	ACNGT	2 cut(s)	517, 598
HpyCH4V	TGCA	2 cut(s)	491, 521
HpyF10VI	GCNNNNNNNGC	3 cut(s)	215, 488, 527
HpyF3I	CTNAG	1 cut(s)	429
Hsp92II	CATG	2 cut(s)	226, 271
HspAI	GCGC	2 cut(s)	74, 501
Ksp22I	TGATCA	2 cut(s)	36, 184
KspI	CCGCGG	1 cut(s)	175
Kzo9I	GATC	7 cut(s)	21, 36, 85, 184, 438, 460, 606
LguI	GCTCTTC	1 cut(s)	64
Lsp1109I	GCAGC	1 cut(s)	475
LweI	GCATC	1 cut(s)	133
MaeI	CTAG	1 cut(s)	510
MalI	GATC	7 cut(s)	23, 38, 87, 186, 440, 462, 608
MboI	GATC	7 cut(s)	21, 36, 85, 184, 438, 460, 606
MboII	GAAGA	4 cut(s)	81, 145, 529, 616
MlsI	TGGCCA	1 cut(s)	59
MluCI	AATT	7 cut(s)	26, 48, 275, 366, 466, 549, 625
MluNI	TGGCCA	1 cut(s)	59
MlyI	GAGTC	2 cut(s)	311, 365
MnlI	CCTC	4 cut(s)	157, 291, 312, 541
Mox20I	TGGCCA	1 cut(s)	59
MscI	TGGCCA	1 cut(s)	59
MseI	TTAA	3 cut(s)	579, 620, 628
Msp20I	TGGCCA	1 cut(s)	59
MspA1I	CMGCKG	1 cut(s)	174
MspI	CCGG	1 cut(s)	324
MspR9I	CCNGG	1 cut(s)	566
MvaI	CCWGG	1 cut(s)	566
MvnI	CGCG	1 cut(s)	174
MwoI	GCNNNNNNNGC	3 cut(s)	215, 488, 527
NdeII	GATC	7 cut(s)	21, 36, 85, 184, 438, 460, 606
NlaIII	CATG	2 cut(s)	226, 271
NlaIV	GGNNCC	1 cut(s)	349
PceI	AGGCCT	1 cut(s)	363
PciSI	GCTCTTC	1 cut(s)	64
PfeI	GAWTC	1 cut(s)	168
PflMI	CCANNNNNTGG	1 cut(s)	31
PkrI	GCNGC	2 cut(s)	176, 490
PleI	GAGTC	2 cut(s)	311, 365
PpsI	GAGTC	2 cut(s)	311, 365
Psp6I	CCWGG	1 cut(s)	564
PspGI	CCWGG	1 cut(s)	564
PspN4I	GGNNCC	1 cut(s)	349
PstNI	CAGNNNCTG	1 cut(s)	479
RsaI	GTAC	2 cut(s)	452, 595
RsaNI	GTAC	2 cut(s)	451, 594
SacII	CCGCGG	1 cut(s)	175
SapI	GCTCTTC	1 cut(s)	64
SaqAI	TTAA	3 cut(s)	579, 620, 628
SatI	GCNGC	2 cut(s)	175, 489
Sau3AI	GATC	7 cut(s)	21, 36, 85, 184, 438, 460, 606
SchI	GAGTC	2 cut(s)	311, 365
ScrFI	CCNGG	1 cut(s)	566
SetI	ASST	5 cut(s)	203, 304, 402, 409, 545
SfaNI	GCATC	1 cut(s)	133
Sfr303I	CCGCGG	1 cut(s)	175
SgrBI	CCGCGG	1 cut(s)	175
Sse9I	AATT	7 cut(s)	26, 48, 275, 366, 466, 549, 625
SseBI	AGGCCT	1 cut(s)	363
SsiI	CCGC	3 cut(s)	172, 174, 310
SspMI	CTAG	1 cut(s)	510
StuI	AGGCCT	1 cut(s)	363
StyD4I	CCNGG	1 cut(s)	564
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	2 cut(s)	517, 598
TaqI	TCGA	1 cut(s)	374
TasI	AATT	7 cut(s)	26, 48, 275, 366, 466, 549, 625
TatI	WGTACW	1 cut(s)	450
TauI	GCSGC	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	168
Tru1I	TTAA	3 cut(s)	579, 620, 628
Tru9I	TTAA	3 cut(s)	579, 620, 628
TscAI	CASTG	1 cut(s)	484
TseI	GCWGC	1 cut(s)	488
TspRI	CASTG	1 cut(s)	484
Van91I	CCANNNNNTGG	1 cut(s)	31
XapI	RAATTY	1 cut(s)	549
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73
XspI	CTAG	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.