Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004244

Physical Location & Seq

Genomic Coordinates Forward (+)

34076883 .. 34077290

Gene Structure 408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG179700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGATGAGTTCCCTGCTCTCAAAGGCCAGAGTGTGTCATACGCCATGCTTCAATTCCCTCCAAACACAATATTCCCACCTCACACCCGCCTTGACTCTGCCGGACTCATGTTTGTCCTTACTGGTTCCTTGGAAGTAGGCCTAATCGACACAACAAACGTTCTATATACTAAAAAGCTTCAAGCTGGAGATATGTTTGTGTTCCCTAAGGGATTGATCCATTATCAGTATAACGCGGATCCTAATTTGCCAGCCACTGCCATTGCAGCATTTGGAAGCGCAAGCGCTAGATCAGTTGCAGTTCCAGCCTCTATCTTCAGCTCTGGAATTCGTGATGTTGTCCTGGCAAAATCATTCAAGACAGATGTTAGTACCGTTAGGAAGATCAGGGCTGGCCTAAAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016197 GO:0019538 GO:0019941 GO:0030163 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

135

Amino Acids

14.51

Weight (kDa)

9.52

Isoelectric Point (pI)

33.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	2 - 126	1.1e-24	Cupin
Cupin_2	PF07883	17 - 89	7.9e-07	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004244)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g08370 FvH4_7g08383 FvH4_7g08390
malus_domestica	MD07G1084100.v1.1
prunus_persica	Prupe.2G111000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0340191 RchiOBHm_Chr1g0340211 RchiOBHm_Chr1g0340251
rosa_laevigata	RLG00000029004 RLG00000029005 RLG00000029007
rosa_multiflora	Rmu_co8401649.1_g000001 Rmu_sc0001836.1_g000001 Rmu_sc0001836.1_g000002 Rmu_sc0001836.1_g000005 Rmu_sc0005193.1_g000011 Rmu_sc0005193.1_g000016 Rmu_sc0005193.1_g000018
rosa_roxburghii	Rroxscaffold_4G00311090
rosa_rugosa	Rorug01G0164700.1 Rorug01G0165000 Rorug01G0165100
rosa_samantha	Rh1AG179300 Rh1AG179700 Rh1BG147500 Rh1BG147700 Rh1BG147900 Rh1CG166200 Rh1DG179400 Rh1DG179500 Rh1DG179900
rosa_wichuraiana	Rw1G014940 Rw1G014960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	236
AciI	CCGC	2 cut(s)	88, 236
AclI	AACGTT	1 cut(s)	159
AclWI	GGATC	3 cut(s)	211, 233, 246
AcsI	RAATTY	1 cut(s)	327
AcuI	CTGAAG	1 cut(s)	301
AfaI	GTAC	1 cut(s)	373
AfeI	AGCGCT	1 cut(s)	286
AgsI	TTSAA	3 cut(s)	53, 182, 358
AjnI	CCWGG	1 cut(s)	342
AluBI	AGCT	3 cut(s)	178, 185, 321
AluI	AGCT	3 cut(s)	178, 185, 321
AlwI	GGATC	3 cut(s)	211, 233, 246
AlwNI	CAGNNNCTG	1 cut(s)	257
Aor51HI	AGCGCT	1 cut(s)	286
AoxI	GGCC	3 cut(s)	25, 139, 394
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	327
AspLEI	GCGC	2 cut(s)	281, 287
AxyI	CCTNAGG	1 cut(s)	207
BamHI	GGATCC	1 cut(s)	238
BbvI	GCAGC	1 cut(s)	278
BciT130I	CCWGG	1 cut(s)	344
BfaI	CTAG	1 cut(s)	288
BfoI	RGCGCY	1 cut(s)	288
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	1 cut(s)	344
BmiI	GGNNCC	2 cut(s)	127, 240
BmrFI	CCNGG	1 cut(s)	344
BpmI	CTGGAG	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	129
Bse1I	ACTGG	1 cut(s)	127
Bse21I	CCTNAGG	1 cut(s)	207
Bse3DI	GCAATG	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	344
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	1 cut(s)	10
BseMI	GCAATG	1 cut(s)	261
BseNI	ACTGG	1 cut(s)	127
BseXI	GCAGC	1 cut(s)	278
Bsh1236I	CGCG	1 cut(s)	236
BshFI	GGCC	3 cut(s)	27, 141, 396
BsiSI	CCGG	1 cut(s)	102
BsnI	GGCC	3 cut(s)	27, 141, 396
Bsp143I	GATC	4 cut(s)	216, 238, 290, 384
BspACI	CCGC	2 cut(s)	88, 236
BspANI	GGCC	3 cut(s)	27, 141, 396
BspFNI	CGCG	1 cut(s)	236
BspLI	GGNNCC	2 cut(s)	127, 240
BspPI	GGATC	3 cut(s)	211, 233, 246
BsrDI	GCAATG	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	127
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	4 cut(s)	216, 238, 290, 384
BssT1I	CCWWGG	1 cut(s)	129
Bst2UI	CCWGG	1 cut(s)	344
Bst4CI	ACNGT	1 cut(s)	376
BstC8I	GCNNGC	3 cut(s)	252, 283, 394
BstDEI	CTNAG	1 cut(s)	207
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	236
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	2 cut(s)	281, 287
BstKTI	GATC	4 cut(s)	219, 241, 293, 387
BstMBI	GATC	4 cut(s)	216, 238, 290, 384
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 305
BstNI	CCWGG	1 cut(s)	344
BstSCI	CCNGG	1 cut(s)	342
BstUI	CGCG	1 cut(s)	236
BstV1I	GCAGC	1 cut(s)	278
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
Bsu36I	CCTNAGG	1 cut(s)	207
BsuRI	GGCC	3 cut(s)	27, 141, 396
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	1 cut(s)	255
Cac8I	GCNNGC	3 cut(s)	252, 283, 394
CaiI	CAGNNNCTG	1 cut(s)	257
CfoI	GCGC	2 cut(s)	281, 287
Csp6I	GTAC	1 cut(s)	372
CspCI	CAANNNNNGTGG	2 cut(s)	244, 279
CviAII	CATG	2 cut(s)	46, 109
CviJI	RGCY	9 cut(s)	27, 141, 178, 185, 254, 308, 321, 392, 396
CviKI_1	RGCY	9 cut(s)	27, 141, 178, 185, 254, 308, 321, 392, 396
CviQI	GTAC	1 cut(s)	372
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	4 cut(s)	218, 240, 292, 386
DpnII	GATC	4 cut(s)	216, 238, 290, 384
Eco130I	CCWWGG	1 cut(s)	129
Eco147I	AGGCCT	1 cut(s)	141
Eco47III	AGCGCT	1 cut(s)	286
Eco57I	CTGAAG	1 cut(s)	301
Eco81I	CCTNAGG	1 cut(s)	207
EcoRI	GAATTC	1 cut(s)	327
EcoRII	CCWGG	1 cut(s)	342
EcoT14I	CCWWGG	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	2 cut(s)	49, 112
FaiI	YATR	7 cut(s)	40, 47, 110, 166, 168, 194, 231
FatI	CATG	2 cut(s)	45, 108
FauI	CCCGC	1 cut(s)	95
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	1 cut(s)	288
GlaI	GCGC	2 cut(s)	280, 286
GluI	GCNGC	1 cut(s)	267
GsuI	CTGGAG	1 cut(s)	207
HaeII	RGCGCY	1 cut(s)	288
HaeIII	GGCC	3 cut(s)	27, 141, 396
HapII	CCGG	1 cut(s)	102
HhaI	GCGC	2 cut(s)	281, 287
Hin1II	CATG	2 cut(s)	49, 112
Hin6I	GCGC	2 cut(s)	279, 285
HinP1I	GCGC	2 cut(s)	279, 285
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	2 cut(s)	95, 105
HpaII	CCGG	1 cut(s)	102
Hpy188III	TCNNGA	3 cut(s)	324, 332, 358
HpyCH4III	ACNGT	1 cut(s)	376
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	2 cut(s)	266, 299
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 305
HpyF3I	CTNAG	1 cut(s)	207
HpySE526I	ACGT	1 cut(s)	159
Hsp92II	CATG	2 cut(s)	49, 112
HspAI	GCGC	2 cut(s)	279, 285
Kzo9I	GATC	4 cut(s)	216, 238, 290, 384
Lsp1109I	GCAGC	1 cut(s)	278
MaeI	CTAG	1 cut(s)	288
MaeII	ACGT	1 cut(s)	159
MalI	GATC	4 cut(s)	218, 240, 292, 386
MboI	GATC	4 cut(s)	216, 238, 290, 384
MboII	GAAGA	2 cut(s)	307, 394
MflI	RGATCY	1 cut(s)	238
MluCI	AATT	4 cut(s)	53, 244, 327, 403
MlyI	GAGTC	2 cut(s)	89, 99
MnlI	CCTC	3 cut(s)	69, 90, 319
MseI	TTAA	1 cut(s)	406
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	1 cut(s)	344
MvaI	CCWGG	1 cut(s)	344
MvnI	CGCG	1 cut(s)	236
MwoI	GCNNNNNNNGC	2 cut(s)	266, 305
NdeII	GATC	4 cut(s)	216, 238, 290, 384
NlaIII	CATG	2 cut(s)	49, 112
NlaIV	GGNNCC	2 cut(s)	127, 240
PceI	AGGCCT	1 cut(s)	141
PkrI	GCNGC	1 cut(s)	268
PleI	GAGTC	2 cut(s)	89, 99
PpsI	GAGTC	2 cut(s)	89, 99
Psp1406I	AACGTT	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	342
PspGI	CCWGG	1 cut(s)	342
PspN4I	GGNNCC	2 cut(s)	127, 240
PstNI	CAGNNNCTG	1 cut(s)	257
PsuI	RGATCY	1 cut(s)	238
RsaI	GTAC	1 cut(s)	373
RsaNI	GTAC	1 cut(s)	372
SaqAI	TTAA	1 cut(s)	406
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	4 cut(s)	216, 238, 290, 384
SchI	GAGTC	2 cut(s)	89, 99
ScrFI	CCNGG	1 cut(s)	344
SetI	ASST	5 cut(s)	82, 162, 180, 187, 323
Sse9I	AATT	4 cut(s)	53, 244, 327, 403
SseBI	AGGCCT	1 cut(s)	141
SsiI	CCGC	2 cut(s)	88, 236
SspI	AATATT	1 cut(s)	72
SspMI	CTAG	1 cut(s)	288
StuI	AGGCCT	1 cut(s)	141
StyD4I	CCNGG	1 cut(s)	342
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	1 cut(s)	376
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	1 cut(s)	147
TasI	AATT	4 cut(s)	53, 244, 327, 403
Tru1I	TTAA	1 cut(s)	406
Tru9I	TTAA	1 cut(s)	406
TscAI	CASTG	1 cut(s)	262
TseI	GCWGC	1 cut(s)	266
TspRI	CASTG	1 cut(s)	262
XapI	RAATTY	1 cut(s)	327
XspI	CTAG	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.