Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004244

Physical Location & Seq

Genomic Coordinates Reverse (-)

31785047 .. 31785679

Gene Structure 633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56702

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGGTATGACTATGACGTTGGTTCAATTAATGATGATGATGATCATATTAGTACTTGCTTTGGCCACCTCCAAAAGGGTCTTAGCAAGTGATCCTGACATTCTCTCTGATTATTTACTGCCTCAAAATAGCTCAACTGTTAATGCTACCTATTTTACATACACTGGATTCCGCGAGATATTTGATCAAACACCTGAAACCTTTAAGGCAACAAAAGCCAGTATGGTGGAGTTCCCTGCTCTCAATGGCCAGAGTGTGTCATATACAGTGCTTCAATTCCCTCCAAGCACACTGTTCCCACCTCACACCCGCCCTGATGCTACTGGACTTTTGTTCCTTCTTGCTGGTTCCTTAGAAGTCGGGTTCATTGACACAAAAAATGTCCTACACACTCAAAAGCTTCAGGCTGGAGATATATTTATATTTCCCAAGGGTTTAATCCATTATCAGTATAACTCTGATCCTCAGTTGCGAGCTACCGCCATTGCAGCATTTGGAAGTGCAAGTGCTAGAGCAGTTACAGTGCCACCTTCTGTTTTTACCTCGGGTGTCGACGATGTCATCCTTGCCAAATCTTTCAAGACTGATGTTGATACCATTAAGAAGATTAAGGATGGTCTCACTACTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016197 GO:0019538 GO:0019941 GO:0030163 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

210

Amino Acids

22.87

Weight (kDa)

6.27

Isoelectric Point (pI)

27.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	66 - 200	7.2e-24	Cupin
Cupin_2	PF07883	91 - 156	1.1e-06	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004244)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g08370 FvH4_7g08383 FvH4_7g08390
malus_domestica	MD07G1084100.v1.1
prunus_persica	Prupe.2G111000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0340191 RchiOBHm_Chr1g0340211 RchiOBHm_Chr1g0340251
rosa_laevigata	RLG00000029004 RLG00000029005 RLG00000029007
rosa_multiflora	Rmu_co8401649.1_g000001 Rmu_sc0001836.1_g000001 Rmu_sc0001836.1_g000002 Rmu_sc0001836.1_g000005 Rmu_sc0005193.1_g000011 Rmu_sc0005193.1_g000016 Rmu_sc0005193.1_g000018
rosa_roxburghii	Rroxscaffold_4G00311090
rosa_rugosa	Rorug01G0164700.1 Rorug01G0165000 Rorug01G0165100
rosa_samantha	Rh1AG179300 Rh1AG179700 Rh1BG147500 Rh1BG147700 Rh1BG147900 Rh1CG166200 Rh1DG179400 Rh1DG179500 Rh1DG179900
rosa_wichuraiana	Rw1G014940 Rw1G014960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	552
AccII	CGCG	1 cut(s)	174
AciI	CCGC	3 cut(s)	172, 310, 480
AclWI	GGATC	2 cut(s)	86, 455
AcoI	YGGCCR	2 cut(s)	63, 247
AcuI	CTGAAG	1 cut(s)	386
AfaI	GTAC	1 cut(s)	54
AfiI	CCNNNNNNNGG	1 cut(s)	75
AgsI	TTSAA	3 cut(s)	26, 275, 580
AluBI	AGCT	4 cut(s)	132, 400, 476, 630
AluI	AGCT	4 cut(s)	132, 400, 476, 630
Alw26I	GTCTC	1 cut(s)	623
AlwI	GGATC	2 cut(s)	86, 455
Ama87I	CYCGRG	1 cut(s)	544
AoxI	GGCC	2 cut(s)	63, 247
ApeKI	GCWGC	1 cut(s)	488
AseI	ATTAAT	1 cut(s)	29
AvaI	CYCGRG	1 cut(s)	544
BalI	TGGCCA	2 cut(s)	65, 249
BbvI	GCAGC	1 cut(s)	500
BccI	CCATC	1 cut(s)	608
BclI	TGATCA	2 cut(s)	42, 184
BcoDI	GTCTC	1 cut(s)	623
BfaI	CTAG	2 cut(s)	510, 627
BisI	GCNGC	1 cut(s)	489
BlsI	GCNGC	1 cut(s)	490
BmcAI	AGTACT	1 cut(s)	54
BmeT110I	CYCGRG	1 cut(s)	544
BmiI	GGNNCC	1 cut(s)	349
BmsI	GCATC	1 cut(s)	307
BpmI	CTGGAG	1 cut(s)	429
BsaBI	GATNNNNATC	1 cut(s)	41
BsaI	GGTCTC	1 cut(s)	623
BsaJI	CCNNGG	2 cut(s)	429, 543
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse1I	ACTGG	3 cut(s)	169, 219, 328
Bse3DI	GCAATG	1 cut(s)	483
Bse8I	GATNNNNATC	1 cut(s)	41
BseDI	CCNNGG	2 cut(s)	429, 543
BseGI	GGATG	2 cut(s)	561, 619
BseJI	GATNNNNATC	1 cut(s)	41
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMI	GCAATG	1 cut(s)	483
BseMII	CTCAG	1 cut(s)	479
BseNI	ACTGG	3 cut(s)	169, 219, 328
BseXI	GCAGC	1 cut(s)	500
Bsh1236I	CGCG	1 cut(s)	174
BshFI	GGCC	2 cut(s)	65, 249
BsiHKCI	CYCGRG	1 cut(s)	544
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmAI	GTCTC	1 cut(s)	623
BsnI	GGCC	2 cut(s)	65, 249
Bso31I	GGTCTC	1 cut(s)	623
BsoBI	CYCGRG	1 cut(s)	544
Bsp143I	GATC	4 cut(s)	42, 91, 184, 460
BspACI	CCGC	3 cut(s)	172, 310, 480
BspANI	GGCC	2 cut(s)	65, 249
BspCNI	CTCAG	1 cut(s)	478
BspFNI	CGCG	1 cut(s)	174
BspLI	GGNNCC	1 cut(s)	349
BspPI	GGATC	2 cut(s)	86, 455
BspTNI	GGTCTC	1 cut(s)	623
BsrDI	GCAATG	1 cut(s)	483
BsrI	ACTGG	3 cut(s)	169, 219, 328
BssECI	CCNNGG	2 cut(s)	429, 543
BssMI	GATC	4 cut(s)	42, 91, 184, 460
BssT1I	CCWWGG	1 cut(s)	429
Bst4CI	ACNGT	4 cut(s)	139, 268, 294, 523
BstC8I	GCNNGC	1 cut(s)	474
BstDEI	CTNAG	3 cut(s)	82, 352, 465
BstENI	CCTNNNNNAGG	1 cut(s)	73
BstF5I	GGATG	2 cut(s)	561, 619
BstFNI	CGCG	1 cut(s)	174
BstKTI	GATC	4 cut(s)	45, 94, 187, 463
BstMAI	GTCTC	1 cut(s)	623
BstMBI	GATC	4 cut(s)	42, 91, 184, 460
BstMWI	GCNNNNNNNGC	2 cut(s)	215, 488
BstUI	CGCG	1 cut(s)	174
BstV1I	GCAGC	1 cut(s)	500
BstXI	CCANNNNNNTGG	1 cut(s)	226
BsuRI	GGCC	2 cut(s)	65, 249
BtsCI	GGATG	2 cut(s)	561, 619
BtsIMutI	CAGTG	4 cut(s)	162, 273, 290, 528
Cac8I	GCNNGC	1 cut(s)	474
Csp6I	GTAC	1 cut(s)	53
CviJI	RGCY	8 cut(s)	65, 132, 218, 249, 400, 407, 476, 630
CviKI_1	RGCY	8 cut(s)	65, 132, 218, 249, 400, 407, 476, 630
CviQI	GTAC	1 cut(s)	53
DdeI	CTNAG	3 cut(s)	82, 352, 465
DpnI	GATC	4 cut(s)	44, 93, 186, 462
DpnII	GATC	4 cut(s)	42, 91, 184, 460
EaeI	YGGCCR	2 cut(s)	63, 247
Eco130I	CCWWGG	1 cut(s)	429
Eco31I	GGTCTC	1 cut(s)	623
Eco57I	CTGAAG	1 cut(s)	386
Eco88I	CYCGRG	1 cut(s)	544
EcoNI	CCTNNNNNAGG	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	429
FauI	CCCGC	1 cut(s)	317
FbaI	TGATCA	2 cut(s)	42, 184
FblI	GTMKAC	1 cut(s)	552
Fnu4HI	GCNGC	1 cut(s)	489
FokI	GGATG	2 cut(s)	548, 626
Fsp4HI	GCNGC	1 cut(s)	489
FspBI	CTAG	2 cut(s)	510, 627
GluI	GCNGC	1 cut(s)	489
GsuI	CTGGAG	1 cut(s)	429
HaeIII	GGCC	2 cut(s)	65, 249
HincII	GTYRAC	1 cut(s)	553
HindII	GTYRAC	1 cut(s)	553
HindIII	AAGCTT	1 cut(s)	398
HinfI	GANTC	1 cut(s)	168
Hpy166II	GTNNAC	1 cut(s)	553
Hpy188I	TCNGA	2 cut(s)	109, 460
Hpy188III	TCNNGA	2 cut(s)	95, 580
Hpy8I	GTNNAC	1 cut(s)	553
Hpy99I	CGWCG	1 cut(s)	557
HpyAV	CCTTC	2 cut(s)	347, 540
HpyCH4III	ACNGT	4 cut(s)	139, 268, 294, 523
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	2 cut(s)	488, 503
HpyF10VI	GCNNNNNNNGC	2 cut(s)	215, 488
HpyF3I	CTNAG	3 cut(s)	82, 352, 465
HpySE526I	ACGT	1 cut(s)	17
Ksp22I	TGATCA	2 cut(s)	42, 184
Kzo9I	GATC	4 cut(s)	42, 91, 184, 460
Lsp1109I	GCAGC	1 cut(s)	500
LweI	GCATC	1 cut(s)	307
MaeI	CTAG	2 cut(s)	510, 627
MaeII	ACGT	1 cut(s)	17
MaeIII	GTNAC	1 cut(s)	517
MalI	GATC	4 cut(s)	44, 93, 186, 462
MboI	GATC	4 cut(s)	42, 91, 184, 460
MboII	GAAGA	1 cut(s)	616
MlsI	TGGCCA	2 cut(s)	65, 249
MluCI	AATT	2 cut(s)	26, 275
MluNI	TGGCCA	2 cut(s)	65, 249
MnlI	CCTC	6 cut(s)	79, 132, 291, 312, 474, 553
Mox20I	TGGCCA	2 cut(s)	65, 249
MscI	TGGCCA	2 cut(s)	65, 249
MseI	TTAA	6 cut(s)	29, 141, 204, 437, 600, 609
Msp20I	TGGCCA	2 cut(s)	65, 249
MvnI	CGCG	1 cut(s)	174
MwoI	GCNNNNNNNGC	2 cut(s)	215, 488
NdeII	GATC	4 cut(s)	42, 91, 184, 460
NlaIV	GGNNCC	1 cut(s)	349
PfeI	GAWTC	1 cut(s)	168
PflFI	GACNNNGTC	1 cut(s)	557
PkrI	GCNGC	1 cut(s)	490
PshBI	ATTAAT	1 cut(s)	29
PspN4I	GGNNCC	1 cut(s)	349
PsyI	GACNNNGTC	1 cut(s)	557
RsaI	GTAC	1 cut(s)	54
RsaNI	GTAC	1 cut(s)	53
SalI	GTCGAC	1 cut(s)	551
SaqAI	TTAA	6 cut(s)	29, 141, 204, 437, 600, 609
SatI	GCNGC	1 cut(s)	489
Sau3AI	GATC	4 cut(s)	42, 91, 184, 460
ScaI	AGTACT	1 cut(s)	54
SfaNI	GCATC	1 cut(s)	307
Sse9I	AATT	2 cut(s)	26, 275
SsiI	CCGC	3 cut(s)	172, 310, 480
SspMI	CTAG	2 cut(s)	510, 627
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	4 cut(s)	139, 268, 294, 523
TaiI	ACGT	1 cut(s)	20
TaqI	TCGA	1 cut(s)	552
TasI	AATT	2 cut(s)	26, 275
TatI	WGTACW	1 cut(s)	52
TfiI	GAWTC	1 cut(s)	168
Tru1I	TTAA	6 cut(s)	29, 141, 204, 437, 600, 609
Tru9I	TTAA	6 cut(s)	29, 141, 204, 437, 600, 609
TscAI	CASTG	4 cut(s)	169, 273, 297, 528
TseI	GCWGC	1 cut(s)	488
TspDTI	ATGAA	1 cut(s)	355
TspRI	CASTG	4 cut(s)	169, 273, 297, 528
Tth111I	GACNNNGTC	1 cut(s)	557
VspI	ATTAAT	1 cut(s)	29
XagI	CCTNNNNNAGG	1 cut(s)	73
XmiI	GTMKAC	1 cut(s)	552
XspI	CTAG	2 cut(s)	510, 627
ZrmI	AGTACT	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.