Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004244

Physical Location & Seq

Genomic Coordinates Reverse (-)

31285010 .. 31285636

Gene Structure 627 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029005

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCTACTATGAGGTTGGTTCGATTAATGATGATGATGATCATATTAGTACTTGCTTTGGCCACCTCCAAAAGGGTCTTAGCAAGTGATCCTGACATTCTCTCTGACTATATACTGCCTCAAAACAGCACAACTGTTAATGCTACCTATTTTACATACACTGGATTCCGAGACATATTTGATCAAACACCCGAAACCTTTAAGGCAACAAAAGCCAGCATAGTGGAGTTCCCTGCTCTCAATGGCCAGAGTGTGTCATATGCCGTGCTTCAATTCCCTCCGAGCACACTGTTCCCACCTCACACCCGCCCTGATGCCACTGGACTTTTGTTCCTTCTTGCCGGTTCCTTGGAAGTTGGGTTAATTGACACAAAAAATGTCCTATACAATCAAAAGCTTCTGGCTGGAGATATCTTTATATTTCCGAAGGGCCTAATCCATTATCAGTATAACTCTGATCCTCAGTTGCCAGCTACCGCCATTGCAGCATTCGGAAGTGCAAGTGCTAGAGCAGTTACAGTGCCACCTTCAGTTTTTACGTCGGGTATTGACGAGGTCATCCTTGCCAAATCTTTCAAGACTGACGTTGATACCATTAAGAAGATCATGGCTGGCCTCACTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016197 GO:0019538 GO:0019941 GO:0030163 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

209

Amino Acids

22.6

Weight (kDa)

6.72

Isoelectric Point (pI)

29.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	66 - 199	2.4e-24	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004244)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g08370 FvH4_7g08383 FvH4_7g08390
malus_domestica	MD07G1084100.v1.1
prunus_persica	Prupe.2G111000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0340191 RchiOBHm_Chr1g0340211 RchiOBHm_Chr1g0340251
rosa_laevigata	RLG00000029004 RLG00000029005 RLG00000029007
rosa_multiflora	Rmu_co8401649.1_g000001 Rmu_sc0001836.1_g000001 Rmu_sc0001836.1_g000002 Rmu_sc0001836.1_g000005 Rmu_sc0005193.1_g000011 Rmu_sc0005193.1_g000016 Rmu_sc0005193.1_g000018
rosa_roxburghii	Rroxscaffold_4G00311090
rosa_rugosa	Rorug01G0164700.1 Rorug01G0165000 Rorug01G0165100
rosa_samantha	Rh1AG179300 Rh1AG179700 Rh1BG147500 Rh1BG147700 Rh1BG147900 Rh1CG166200 Rh1DG179400 Rh1DG179500 Rh1DG179900
rosa_wichuraiana	Rw1G014940 Rw1G014960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	307, 477
AclWI	GGATC	2 cut(s)	83, 452
AcoI	YGGCCR	2 cut(s)	60, 244
AcuI	CTGAAG	1 cut(s)	513
AfaI	GTAC	1 cut(s)	51
AfiI	CCNNNNNNNGG	1 cut(s)	72
AgsI	TTSAA	2 cut(s)	272, 577
AluBI	AGCT	3 cut(s)	397, 473, 624
AluI	AGCT	3 cut(s)	397, 473, 624
Alw21I	GWGCWC	1 cut(s)	287
Alw26I	GTCTC	1 cut(s)	165
AlwI	GGATC	2 cut(s)	83, 452
AoxI	GGCC	4 cut(s)	60, 244, 430, 613
ApeKI	GCWGC	1 cut(s)	485
AseI	ATTAAT	1 cut(s)	26
AspS9I	GGNCC	1 cut(s)	430
BalI	TGGCCA	2 cut(s)	62, 246
Bbv12I	GWGCWC	1 cut(s)	287
BbvI	GCAGC	1 cut(s)	497
BceAI	ACGGC	1 cut(s)	248
BclI	TGATCA	2 cut(s)	39, 181
BcoDI	GTCTC	1 cut(s)	165
BfaI	CTAG	2 cut(s)	507, 621
BisI	GCNGC	1 cut(s)	486
BlsI	GCNGC	1 cut(s)	487
BmcAI	AGTACT	1 cut(s)	51
BmgT120I	GGNCC	1 cut(s)	430
BmiI	GGNNCC	1 cut(s)	346
BmsI	GCATC	1 cut(s)	304
BpmI	CTGGAG	1 cut(s)	426
BsaBI	GATNNNNATC	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	348
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse118I	RCCGGY	1 cut(s)	341
Bse1I	ACTGG	2 cut(s)	166, 325
Bse3DI	GCAATG	1 cut(s)	480
Bse8I	GATNNNNATC	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	348
BseGI	GGATG	1 cut(s)	558
BseJI	GATNNNNATC	1 cut(s)	38
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseMI	GCAATG	1 cut(s)	480
BseMII	CTCAG	1 cut(s)	476
BseNI	ACTGG	2 cut(s)	166, 325
BseXI	GCAGC	1 cut(s)	497
BshFI	GGCC	4 cut(s)	62, 246, 432, 615
BsiHKAI	GWGCWC	1 cut(s)	287
BsiSI	CCGG	1 cut(s)	342
BslI	CCNNNNNNNGG	1 cut(s)	72
BsmAI	GTCTC	1 cut(s)	165
BsmI	GAATGC	1 cut(s)	488
BsnI	GGCC	4 cut(s)	62, 246, 432, 615
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp143I	GATC	5 cut(s)	39, 88, 181, 457, 603
BspACI	CCGC	2 cut(s)	307, 477
BspANI	GGCC	4 cut(s)	62, 246, 432, 615
BspCNI	CTCAG	1 cut(s)	475
BspLI	GGNNCC	1 cut(s)	346
BspPI	GGATC	2 cut(s)	83, 452
BsrDI	GCAATG	1 cut(s)	480
BsrFI	RCCGGY	1 cut(s)	341
BsrI	ACTGG	2 cut(s)	166, 325
BssAI	RCCGGY	1 cut(s)	341
BssECI	CCNNGG	1 cut(s)	348
BssMI	GATC	5 cut(s)	39, 88, 181, 457, 603
BssT1I	CCWWGG	1 cut(s)	348
Bst4CI	ACNGT	3 cut(s)	136, 291, 520
BstC8I	GCNNGC	3 cut(s)	217, 471, 613
BstDEI	CTNAG	2 cut(s)	79, 462
BstENI	CCTNNNNNAGG	1 cut(s)	70
BstF5I	GGATG	1 cut(s)	558
BstKTI	GATC	5 cut(s)	42, 91, 184, 460, 606
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	5 cut(s)	39, 88, 181, 457, 603
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 485, 621
BstV1I	GCAGC	1 cut(s)	497
BstXI	CCANNNNNNTGG	1 cut(s)	223
BsuRI	GGCC	4 cut(s)	62, 246, 432, 615
BtsCI	GGATG	1 cut(s)	558
BtsIMutI	CAGTG	4 cut(s)	159, 287, 318, 525
Cac8I	GCNNGC	3 cut(s)	217, 471, 613
Cfr10I	RCCGGY	1 cut(s)	341
Cfr13I	GGNCC	1 cut(s)	430
Csp6I	GTAC	1 cut(s)	50
CviAII	CATG	1 cut(s)	607
CviQI	GTAC	1 cut(s)	50
DdeI	CTNAG	2 cut(s)	79, 462
DpnI	GATC	5 cut(s)	41, 90, 183, 459, 605
DpnII	GATC	5 cut(s)	39, 88, 181, 457, 603
EaeI	YGGCCR	2 cut(s)	60, 244
Eco130I	CCWWGG	1 cut(s)	348
Eco32I	GATATC	1 cut(s)	412
Eco57I	CTGAAG	1 cut(s)	513
EcoNI	CCTNNNNNAGG	1 cut(s)	70
EcoO109I	RGGNCCY	1 cut(s)	430
EcoRV	GATATC	1 cut(s)	412
EcoT14I	CCWWGG	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	1 cut(s)	610
FatI	CATG	1 cut(s)	606
FauI	CCCGC	1 cut(s)	314
FauNDI	CATATG	1 cut(s)	259
FbaI	TGATCA	2 cut(s)	39, 181
Fnu4HI	GCNGC	1 cut(s)	486
FokI	GGATG	1 cut(s)	545
Fsp4HI	GCNGC	1 cut(s)	486
FspBI	CTAG	2 cut(s)	507, 621
GluI	GCNGC	1 cut(s)	486
GsuI	CTGGAG	1 cut(s)	426
HaeIII	GGCC	4 cut(s)	62, 246, 432, 615
HapII	CCGG	1 cut(s)	342
Hin1II	CATG	1 cut(s)	610
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	1 cut(s)	165
HpaII	CCGG	1 cut(s)	342
Hpy188I	TCNGA	6 cut(s)	106, 170, 282, 426, 457, 494
Hpy188III	TCNNGA	2 cut(s)	92, 577
Hpy99I	CGWCG	1 cut(s)	544
HpyAV	CCTTC	3 cut(s)	344, 421, 537
HpyCH4III	ACNGT	3 cut(s)	136, 291, 520
HpyCH4IV	ACGT	2 cut(s)	539, 585
HpyCH4V	TGCA	2 cut(s)	485, 500
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 485, 621
HpyF3I	CTNAG	2 cut(s)	79, 462
HpySE526I	ACGT	2 cut(s)	539, 585
Hsp92II	CATG	1 cut(s)	610
Ksp22I	TGATCA	2 cut(s)	39, 181
Kzo9I	GATC	5 cut(s)	39, 88, 181, 457, 603
Lsp1109I	GCAGC	1 cut(s)	497
LweI	GCATC	1 cut(s)	304
MaeI	CTAG	2 cut(s)	507, 621
MaeII	ACGT	2 cut(s)	539, 585
MaeIII	GTNAC	1 cut(s)	514
MalI	GATC	5 cut(s)	41, 90, 183, 459, 605
MboI	GATC	5 cut(s)	39, 88, 181, 457, 603
MboII	GAAGA	1 cut(s)	613
MhlI	GDGCHC	1 cut(s)	287
MlsI	TGGCCA	2 cut(s)	62, 246
MluCI	AATT	2 cut(s)	272, 363
MluNI	TGGCCA	2 cut(s)	62, 246
MnlI	CCTC	8 cut(s)	6, 76, 129, 288, 309, 471, 547, 626
Mox20I	TGGCCA	2 cut(s)	62, 246
MscI	TGGCCA	2 cut(s)	62, 246
MseI	TTAA	5 cut(s)	26, 138, 201, 362, 597
Msp20I	TGGCCA	2 cut(s)	62, 246
MspI	CCGG	1 cut(s)	342
Mva1269I	GAATGC	1 cut(s)	488
MwoI	GCNNNNNNNGC	3 cut(s)	212, 485, 621
NdeI	CATATG	1 cut(s)	259
NdeII	GATC	5 cut(s)	39, 88, 181, 457, 603
NlaIII	CATG	1 cut(s)	610
NlaIV	GGNNCC	1 cut(s)	346
PctI	GAATGC	1 cut(s)	488
PfeI	GAWTC	1 cut(s)	165
PflFI	GACNNNGTC	1 cut(s)	554
PkrI	GCNGC	1 cut(s)	487
PshBI	ATTAAT	1 cut(s)	26
PspN4I	GGNNCC	1 cut(s)	346
PspPI	GGNCC	1 cut(s)	430
PsyI	GACNNNGTC	1 cut(s)	554
RsaI	GTAC	1 cut(s)	51
RsaNI	GTAC	1 cut(s)	50
SaqAI	TTAA	5 cut(s)	26, 138, 201, 362, 597
SatI	GCNGC	1 cut(s)	486
Sau3AI	GATC	5 cut(s)	39, 88, 181, 457, 603
Sau96I	GGNCC	1 cut(s)	430
ScaI	AGTACT	1 cut(s)	51
SduI	GDGCHC	1 cut(s)	287
SfaNI	GCATC	1 cut(s)	304
Sse9I	AATT	2 cut(s)	272, 363
SsiI	CCGC	2 cut(s)	307, 477
SspMI	CTAG	2 cut(s)	507, 621
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	3 cut(s)	136, 291, 520
TaiI	ACGT	2 cut(s)	542, 588
TaqI	TCGA	1 cut(s)	22
TasI	AATT	2 cut(s)	272, 363
TatI	WGTACW	1 cut(s)	49
TfiI	GAWTC	1 cut(s)	165
Tru1I	TTAA	5 cut(s)	26, 138, 201, 362, 597
Tru9I	TTAA	5 cut(s)	26, 138, 201, 362, 597
TscAI	CASTG	4 cut(s)	166, 294, 325, 525
TseI	GCWGC	1 cut(s)	485
TspRI	CASTG	4 cut(s)	166, 294, 325, 525
Tth111I	GACNNNGTC	1 cut(s)	554
VspI	ATTAAT	1 cut(s)	26
XagI	CCTNNNNNAGG	1 cut(s)	70
XspI	CTAG	2 cut(s)	507, 621
ZrmI	AGTACT	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.