Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004244

Physical Location & Seq

Genomic Coordinates Forward (+)

8288398 .. 8288991

Gene Structure 594 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g08383.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGTTCGTATTAGTACTTGCTTTGGGCACCTCTAAAAGGGTCTTAGCAAGTGATCCAGACATTCTTTCTGACTATATAGTGCCTCAAAATGTCACAAATGTTGATGCTGCCTATTTTACATACACTGGATTCCGAGGTATATTTGATCGTACACCCGAAACTGTCATAGCAACAAAAGCCAGCATGGTTGAGTTTCCTGCTCTCAATGGCCAGAGTGTGTCATACGCTGTACTTCAATTCCCTCCACAGACACTCCTCCCGCCTCATACTCGCCCCGATGCCGCCGGACTTTTGTTCCTTTTAGATGGTTCCTTGGAAGTAGGCCTAATCGACACGAAAAATAATCTGTACACTAAGAAGCTTCAGGCCGGAGATATGTTTGTGTTTCCCAAAGGATTGATACATTATCAGTATAACTCTCATCATCAAACTCCGGCTACCGCCATTGCTGCATTCGGAAGTGCAAGTGCCAGAGCAGTTGCGGCGCCATCTTCTGTTTTTACTTCAGGTATTGGCGATGTCATCCTTGCAAAATCTTTCAAGACTGACGTTGATACCATTAAGAAGATTAAGGCTGGCCTCACTACCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016197 GO:0019538 GO:0019941 GO:0030163 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

198

Amino Acids

21.1

Weight (kDa)

7.93

Isoelectric Point (pI)

25.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	58 - 187	6.1e-26	Cupin
Cupin_2	PF07883	78 - 150	3.9e-07	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004244)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g08370 FvH4_7g08383 FvH4_7g08390
malus_domestica	MD07G1084100.v1.1
prunus_persica	Prupe.2G111000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0340191 RchiOBHm_Chr1g0340211 RchiOBHm_Chr1g0340251
rosa_laevigata	RLG00000029004 RLG00000029005 RLG00000029007
rosa_multiflora	Rmu_co8401649.1_g000001 Rmu_sc0001836.1_g000001 Rmu_sc0001836.1_g000002 Rmu_sc0001836.1_g000005 Rmu_sc0005193.1_g000011 Rmu_sc0005193.1_g000016 Rmu_sc0005193.1_g000018
rosa_roxburghii	Rroxscaffold_4G00311090
rosa_rugosa	Rorug01G0164700.1 Rorug01G0165000 Rorug01G0165100
rosa_samantha	Rh1AG179300 Rh1AG179700 Rh1BG147500 Rh1BG147700 Rh1BG147900 Rh1CG166200 Rh1DG179400 Rh1DG179500 Rh1DG179900
rosa_wichuraiana	Rw1G014940 Rw1G014960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	26, 484
AciI	CCGC	4 cut(s)	260, 282, 441, 482
AclWI	GGATC	1 cut(s)	47
AcoI	YGGCCR	1 cut(s)	208
AcuI	CTGAAG	2 cut(s)	347, 489
AcyI	GRCGYC	1 cut(s)	485
AfaI	GTAC	4 cut(s)	15, 151, 231, 350
AfiI	CCNNNNNNNGG	1 cut(s)	36
AgsI	TTSAA	2 cut(s)	236, 541
AluBI	AGCT	2 cut(s)	361, 591
AluI	AGCT	2 cut(s)	361, 591
AlwI	GGATC	1 cut(s)	47
AoxI	GGCC	4 cut(s)	208, 322, 366, 577
ApeKI	GCWGC	2 cut(s)	107, 449
AspLEI	GCGC	1 cut(s)	487
BaeGI	GKGCMC	1 cut(s)	29
BalI	TGGCCA	1 cut(s)	210
BanI	GGYRCC	2 cut(s)	26, 484
BbvI	GCAGC	2 cut(s)	94, 436
BccI	CCATC	2 cut(s)	299, 496
BfoI	RGCGCY	1 cut(s)	488
BisI	GCNGC	4 cut(s)	108, 282, 450, 483
BlsI	GCNGC	4 cut(s)	109, 283, 451, 484
BmcAI	AGTACT	1 cut(s)	15
BmiI	GGNNCC	3 cut(s)	28, 310, 486
BmsI	GCATC	2 cut(s)	94, 268
BsaHI	GRCGYC	1 cut(s)	485
BsaJI	CCNNGG	2 cut(s)	133, 312
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bsc4I	CCNNNNNNNGG	1 cut(s)	36
Bse1I	ACTGG	1 cut(s)	130
Bse3DI	GCAATG	1 cut(s)	444
BseDI	CCNNGG	2 cut(s)	133, 312
BseGI	GGATG	1 cut(s)	522
BseLI	CCNNNNNNNGG	1 cut(s)	36
BseMI	GCAATG	1 cut(s)	444
BseNI	ACTGG	1 cut(s)	130
BseRI	GAGGAG	1 cut(s)	245
BseSI	GKGCMC	1 cut(s)	29
BseXI	GCAGC	2 cut(s)	94, 436
BshFI	GGCC	4 cut(s)	210, 324, 368, 579
BshNI	GGYRCC	2 cut(s)	26, 484
BsiSI	CCGG	3 cut(s)	285, 369, 434
BslI	CCNNNNNNNGG	1 cut(s)	36
BsmI	GAATGC	1 cut(s)	452
BsnI	GGCC	4 cut(s)	210, 324, 368, 579
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp1407I	TGTACA	1 cut(s)	348
Bsp143I	GATC	2 cut(s)	52, 145
BspACI	CCGC	4 cut(s)	260, 282, 441, 482
BspANI	GGCC	4 cut(s)	210, 324, 368, 579
BspLI	GGNNCC	3 cut(s)	28, 310, 486
BspPI	GGATC	1 cut(s)	47
BspT107I	GGYRCC	2 cut(s)	26, 484
BsrDI	GCAATG	1 cut(s)	444
BsrGI	TGTACA	1 cut(s)	348
BsrI	ACTGG	1 cut(s)	130
BssECI	CCNNGG	2 cut(s)	133, 312
BssMI	GATC	2 cut(s)	52, 145
BssNI	GRCGYC	1 cut(s)	485
BssT1I	CCWWGG	1 cut(s)	312
Bst4CI	ACNGT	1 cut(s)	163
BstACI	GRCGYC	1 cut(s)	485
BstAUI	TGTACA	1 cut(s)	348
BstC8I	GCNNGC	2 cut(s)	181, 577
BstDEI	CTNAG	2 cut(s)	43, 354
BstENI	CCTNNNNNAGG	1 cut(s)	34
BstF5I	GGATG	1 cut(s)	522
BstH2I	RGCGCY	1 cut(s)	488
BstHHI	GCGC	1 cut(s)	487
BstKTI	GATC	2 cut(s)	55, 148
BstMBI	GATC	2 cut(s)	52, 145
BstMWI	GCNNNNNNNGC	3 cut(s)	176, 449, 482
BstSLI	GKGCMC	1 cut(s)	29
BstV1I	GCAGC	2 cut(s)	94, 436
BsuRI	GGCC	4 cut(s)	210, 324, 368, 579
BtgZI	GCGATG	1 cut(s)	531
BtsCI	GGATG	1 cut(s)	522
BtsIMutI	CAGTG	1 cut(s)	123
Cac8I	GCNNGC	2 cut(s)	181, 577
CfoI	GCGC	1 cut(s)	487
Csp6I	GTAC	4 cut(s)	14, 150, 230, 349
CviAII	CATG	1 cut(s)	184
CviJI	RGCY	9 cut(s)	179, 210, 324, 361, 368, 437, 575, 579, 591
CviKI_1	RGCY	9 cut(s)	179, 210, 324, 361, 368, 437, 575, 579, 591
CviQI	GTAC	4 cut(s)	14, 150, 230, 349
DdeI	CTNAG	2 cut(s)	43, 354
DinI	GGCGCC	1 cut(s)	486
DpnI	GATC	2 cut(s)	54, 147
DpnII	GATC	2 cut(s)	52, 145
EaeI	YGGCCR	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	312
Eco147I	AGGCCT	1 cut(s)	324
Eco57I	CTGAAG	2 cut(s)	347, 489
EcoNI	CCTNNNNNAGG	1 cut(s)	34
EcoT14I	CCWWGG	1 cut(s)	312
EgeI	GGCGCC	1 cut(s)	486
EheI	GGCGCC	1 cut(s)	486
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	1 cut(s)	187
FatI	CATG	1 cut(s)	183
FauI	CCCGC	1 cut(s)	267
Fnu4HI	GCNGC	4 cut(s)	108, 282, 450, 483
FokI	GGATG	1 cut(s)	509
Fsp4HI	GCNGC	4 cut(s)	108, 282, 450, 483
GlaI	GCGC	1 cut(s)	486
GluI	GCNGC	4 cut(s)	108, 282, 450, 483
HaeII	RGCGCY	1 cut(s)	488
HaeIII	GGCC	4 cut(s)	210, 324, 368, 579
HapII	CCGG	3 cut(s)	285, 369, 434
HhaI	GCGC	1 cut(s)	487
Hin1I	GRCGYC	1 cut(s)	485
Hin1II	CATG	1 cut(s)	187
Hin6I	GCGC	1 cut(s)	485
HinP1I	GCGC	1 cut(s)	485
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	1 cut(s)	129
HpaII	CCGG	3 cut(s)	285, 369, 434
Hpy166II	GTNNAC	2 cut(s)	152, 351
Hpy188I	TCNGA	3 cut(s)	70, 134, 458
Hpy188III	TCNNGA	2 cut(s)	56, 541
Hpy8I	GTNNAC	2 cut(s)	152, 351
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4IV	ACGT	1 cut(s)	549
HpyCH4V	TGCA	3 cut(s)	452, 464, 530
HpyF10VI	GCNNNNNNNGC	3 cut(s)	176, 449, 482
HpyF3I	CTNAG	2 cut(s)	43, 354
HpySE526I	ACGT	1 cut(s)	549
Hsp92I	GRCGYC	1 cut(s)	485
Hsp92II	CATG	1 cut(s)	187
HspAI	GCGC	1 cut(s)	485
KasI	GGCGCC	1 cut(s)	484
Kzo9I	GATC	2 cut(s)	52, 145
Lsp1109I	GCAGC	2 cut(s)	94, 436
LweI	GCATC	2 cut(s)	94, 268
MaeII	ACGT	1 cut(s)	549
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	2 cut(s)	54, 147
MboI	GATC	2 cut(s)	52, 145
MboII	GAAGA	2 cut(s)	483, 577
MhlI	GDGCHC	1 cut(s)	29
MlsI	TGGCCA	1 cut(s)	210
MluCI	AATT	1 cut(s)	236
MluNI	TGGCCA	1 cut(s)	210
Mly113I	GGCGCC	1 cut(s)	485
MnlI	CCTC	7 cut(s)	40, 93, 128, 252, 266, 273, 590
Mox20I	TGGCCA	1 cut(s)	210
MscI	TGGCCA	1 cut(s)	210
MseI	TTAA	2 cut(s)	561, 570
Msp20I	TGGCCA	1 cut(s)	210
MspI	CCGG	3 cut(s)	285, 369, 434
Mva1269I	GAATGC	1 cut(s)	452
MwoI	GCNNNNNNNGC	3 cut(s)	176, 449, 482
NarI	GGCGCC	1 cut(s)	485
NdeII	GATC	2 cut(s)	52, 145
NlaIII	CATG	1 cut(s)	187
NlaIV	GGNNCC	3 cut(s)	28, 310, 486
NmuCI	GTSAC	1 cut(s)	91
PceI	AGGCCT	1 cut(s)	324
PctI	GAATGC	1 cut(s)	452
PfeI	GAWTC	1 cut(s)	129
PkrI	GCNGC	4 cut(s)	109, 283, 451, 484
PluTI	GGCGCC	1 cut(s)	488
PspN4I	GGNNCC	3 cut(s)	28, 310, 486
RsaI	GTAC	4 cut(s)	15, 151, 231, 350
RsaNI	GTAC	4 cut(s)	14, 150, 230, 349
SaqAI	TTAA	2 cut(s)	561, 570
SatI	GCNGC	4 cut(s)	108, 282, 450, 483
Sau3AI	GATC	2 cut(s)	52, 145
ScaI	AGTACT	1 cut(s)	15
SduI	GDGCHC	1 cut(s)	29
SetI	ASST	6 cut(s)	32, 139, 363, 511, 552, 593
SfaNI	GCATC	2 cut(s)	94, 268
SfoI	GGCGCC	1 cut(s)	486
Sse9I	AATT	1 cut(s)	236
SseBI	AGGCCT	1 cut(s)	324
SsiI	CCGC	4 cut(s)	260, 282, 441, 482
SspDI	GGCGCC	1 cut(s)	484
StuI	AGGCCT	1 cut(s)	324
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	1 cut(s)	163
TaiI	ACGT	1 cut(s)	552
TaqI	TCGA	1 cut(s)	330
TasI	AATT	1 cut(s)	236
TatI	WGTACW	3 cut(s)	13, 229, 348
TauI	GCSGC	2 cut(s)	284, 485
TfiI	GAWTC	1 cut(s)	129
Tru1I	TTAA	2 cut(s)	561, 570
Tru9I	TTAA	2 cut(s)	561, 570
TscAI	CASTG	1 cut(s)	130
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	2 cut(s)	107, 449
Tsp45I	GTSAC	1 cut(s)	91
TspRI	CASTG	1 cut(s)	130
XagI	CCTNNNNNAGG	1 cut(s)	34
ZrmI	AGTACT	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.