Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0004244

Physical Location & Seq

Genomic Coordinates Forward (+)

8660242 .. 8660871

Gene Structure 630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1084100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCTTTGGCTATGAGATTGATTCAAGTACTGATCATATTAGTATTTTCCTTGGCCACCTTCGAAAGGGCAGTACTAGCAAGTGATCCTGACATTATTTCAGACTTTATAGTCCCACCGAATTACAACGGCACGGTTGATGGAACGTTCTTCACTTTCACTGGATGTCGTGGCATCTTCGATCAAGCTCCTCAAACCATTAAGGCAGGAAAGGCAAGCAGTGTTGAGTTCCCCGCTCTCAATGGCCAAAGTGTGTCGTATGCAGTGCTTCAGTTTCCTCCTAACTCGCTATTTCCACCTCACACCCGCCCCGACGCAACTGGACTGTTGTTTCTTCTTGATGGTACCTTGGAAGTAGGGTTGATCGACACAAAAAACAATCTGTATACACAAAAGCTTCAAACTGGAGATCTGTTTGTTTTTCCCAAAGGATTAGTCCATTACCAGTACAATTCGGATCCTCAGTTGCCAGCCACTGCCATTGCAGCATTCGGAAGTGCAAGTGCTAGAGCAGTTACAGTCCTGCCGTCTGTCTTTGGCACCGGAATCAACAACATGATCCTTGCCAAATCATTTAAGACAGATGTTGGTACCATTGAGAAGATCAAGACTGGCTTCACTGCCCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016197 GO:0019538 GO:0019941 GO:0030163 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

210

Amino Acids

22.45

Weight (kDa)

6.26

Isoelectric Point (pI)

24.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	71 - 196	2.1e-27	Cupin
Cupin_2	PF07883	90 - 162	4.1e-08	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004244)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g08370 FvH4_7g08383 FvH4_7g08390
malus_domestica	MD07G1084100.v1.1
prunus_persica	Prupe.2G111000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0340191 RchiOBHm_Chr1g0340211 RchiOBHm_Chr1g0340251
rosa_laevigata	RLG00000029004 RLG00000029005 RLG00000029007
rosa_multiflora	Rmu_co8401649.1_g000001 Rmu_sc0001836.1_g000001 Rmu_sc0001836.1_g000002 Rmu_sc0001836.1_g000005 Rmu_sc0005193.1_g000011 Rmu_sc0005193.1_g000016 Rmu_sc0005193.1_g000018
rosa_roxburghii	Rroxscaffold_4G00311090
rosa_rugosa	Rorug01G0164700.1 Rorug01G0165000 Rorug01G0165100
rosa_samantha	Rh1AG179300 Rh1AG179700 Rh1BG147500 Rh1BG147700 Rh1BG147900 Rh1CG166200 Rh1DG179400 Rh1DG179500 Rh1DG179900
rosa_wichuraiana	Rw1G014940 Rw1G014960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	110
Acc65I	GGTACC	2 cut(s)	344, 590
AccB1I	GGYRCC	3 cut(s)	344, 539, 590
AccBSI	CCGCTC	1 cut(s)	236
AccI	GTMKAC	1 cut(s)	386
AciI	CCGC	2 cut(s)	234, 307
AclI	AACGTT	1 cut(s)	146
AclWI	GGATC	4 cut(s)	80, 452, 465, 553
AcoI	YGGCCR	2 cut(s)	54, 244
AcuI	CTGAAG	1 cut(s)	254
AfaI	GTAC	5 cut(s)	30, 75, 346, 449, 592
AfiI	CCNNNNNNNGG	1 cut(s)	66
AgsI	TTSAA	2 cut(s)	26, 401
AluBI	AGCT	2 cut(s)	188, 397
AluI	AGCT	2 cut(s)	188, 397
AlwI	GGATC	4 cut(s)	80, 452, 465, 553
AlwNI	CAGNNNCTG	1 cut(s)	476
AoxI	GGCC	2 cut(s)	54, 244
ApeKI	GCWGC	1 cut(s)	485
ArsI	GACNNNNNNTTYG	2 cut(s)	420, 452
Asp718I	GGTACC	2 cut(s)	344, 590
AsuII	TTCGAA	1 cut(s)	63
BalI	TGGCCA	2 cut(s)	56, 246
BamHI	GGATCC	1 cut(s)	457
BanI	GGYRCC	3 cut(s)	344, 539, 590
BbvI	GCAGC	1 cut(s)	497
BccI	CCATC	2 cut(s)	134, 335
BceAI	ACGGC	2 cut(s)	145, 511
BclI	TGATCA	1 cut(s)	33
BfaI	CTAG	3 cut(s)	77, 507, 628
BglII	AGATCT	1 cut(s)	409
BisI	GCNGC	1 cut(s)	486
BlsI	GCNGC	1 cut(s)	487
BmcAI	AGTACT	2 cut(s)	30, 75
BmiI	GGNNCC	4 cut(s)	346, 459, 541, 592
BmsI	GCATC	1 cut(s)	183
BpmI	CTGGAG	1 cut(s)	426
Bpu14I	TTCGAA	1 cut(s)	63
BsaJI	CCNNGG	2 cut(s)	51, 348
BsaWI	WCCGGW	1 cut(s)	542
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse1I	ACTGG	5 cut(s)	166, 325, 409, 445, 616
Bse3DI	GCAATG	1 cut(s)	480
BseDI	CCNNGG	2 cut(s)	51, 348
BseGI	GGATG	1 cut(s)	170
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseMI	GCAATG	1 cut(s)	480
BseMII	CTCAG	1 cut(s)	476
BseNI	ACTGG	5 cut(s)	166, 325, 409, 445, 616
BseRI	GAGGAG	1 cut(s)	180
BseXI	GCAGC	1 cut(s)	497
BshFI	GGCC	2 cut(s)	56, 246
BshNI	GGYRCC	3 cut(s)	344, 539, 590
BsiSI	CCGG	1 cut(s)	543
BslFI	GGGAC	1 cut(s)	98
BslI	CCNNNNNNNGG	1 cut(s)	66
BsmFI	GGGAC	1 cut(s)	98
BsmI	GAATGC	1 cut(s)	488
BsnI	GGCC	2 cut(s)	56, 246
Bsp119I	TTCGAA	1 cut(s)	63
Bsp143I	GATC	8 cut(s)	33, 85, 181, 363, 409, 457, 558, 603
BspACI	CCGC	2 cut(s)	234, 307
BspANI	GGCC	2 cut(s)	56, 246
BspCNI	CTCAG	1 cut(s)	475
BspLI	GGNNCC	4 cut(s)	346, 459, 541, 592
BspPI	GGATC	4 cut(s)	80, 452, 465, 553
BspT104I	TTCGAA	1 cut(s)	63
BspT107I	GGYRCC	3 cut(s)	344, 539, 590
BsrBI	CCGCTC	1 cut(s)	236
BsrDI	GCAATG	1 cut(s)	480
BsrI	ACTGG	5 cut(s)	166, 325, 409, 445, 616
BssECI	CCNNGG	2 cut(s)	51, 348
BssMI	GATC	8 cut(s)	33, 85, 181, 363, 409, 457, 558, 603
BssNAI	GTATAC	1 cut(s)	387
BssT1I	CCWWGG	2 cut(s)	51, 348
Bst1107I	GTATAC	1 cut(s)	387
Bst4CI	ACNGT	3 cut(s)	136, 327, 520
BstBI	TTCGAA	1 cut(s)	63
BstC8I	GCNNGC	2 cut(s)	217, 471
BstDEI	CTNAG	1 cut(s)	462
BstENI	CCTNNNNNAGG	1 cut(s)	64
BstF5I	GGATG	1 cut(s)	170
BstKTI	GATC	8 cut(s)	36, 88, 184, 366, 412, 460, 561, 606
BstMBI	GATC	8 cut(s)	33, 85, 181, 363, 409, 457, 558, 603
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 212, 485
BstV1I	GCAGC	1 cut(s)	497
BstX2I	RGATCY	2 cut(s)	409, 457
BstYI	RGATCY	2 cut(s)	409, 457
BstZ17I	GTATAC	1 cut(s)	387
BsuRI	GGCC	2 cut(s)	56, 246
BtsCI	GGATG	1 cut(s)	170
BtsI	GCAGTG	4 cut(s)	226, 270, 474, 618
BtsIMutI	CAGTG	5 cut(s)	159, 226, 270, 474, 618
Cac8I	GCNNGC	2 cut(s)	217, 471
CaiI	CAGNNNCTG	1 cut(s)	476
CseI	GACGC	1 cut(s)	323
Csp6I	GTAC	5 cut(s)	29, 74, 345, 448, 591
CspCI	CAANNNNNGTGG	2 cut(s)	463, 498
CviAII	CATG	1 cut(s)	556
CviJI	RGCY	8 cut(s)	5, 11, 56, 188, 246, 397, 473, 615
CviKI_1	RGCY	8 cut(s)	5, 11, 56, 188, 246, 397, 473, 615
CviQI	GTAC	5 cut(s)	29, 74, 345, 448, 591
DdeI	CTNAG	1 cut(s)	462
DpnI	GATC	8 cut(s)	35, 87, 183, 365, 411, 459, 560, 605
DpnII	GATC	8 cut(s)	33, 85, 181, 363, 409, 457, 558, 603
DrdI	GACNNNNNNGTC	1 cut(s)	110
DseDI	GACNNNNNNGTC	1 cut(s)	110
EaeI	YGGCCR	2 cut(s)	54, 244
Eco130I	CCWWGG	2 cut(s)	51, 348
Eco57I	CTGAAG	1 cut(s)	254
EcoNI	CCTNNNNNAGG	1 cut(s)	64
EcoT14I	CCWWGG	2 cut(s)	51, 348
ErhI	CCWWGG	2 cut(s)	51, 348
FaeI	CATG	1 cut(s)	559
FaiI	YATR	6 cut(s)	14, 38, 110, 261, 387, 557
FalI	AAGNNNNNCTT	1 cut(s)	599
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	1 cut(s)	555
FauI	CCCGC	2 cut(s)	241, 314
FbaI	TGATCA	1 cut(s)	33
FblI	GTMKAC	1 cut(s)	386
Fnu4HI	GCNGC	1 cut(s)	486
FokI	GGATG	1 cut(s)	177
Fsp4HI	GCNGC	1 cut(s)	486
FspBI	CTAG	3 cut(s)	77, 507, 628
GluI	GCNGC	1 cut(s)	486
GsuI	CTGGAG	1 cut(s)	426
HaeIII	GGCC	2 cut(s)	56, 246
HapII	CCGG	1 cut(s)	543
HgaI	GACGC	1 cut(s)	323
Hin1II	CATG	1 cut(s)	559
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	2 cut(s)	22, 546
HpaII	CCGG	1 cut(s)	543
Hpy166II	GTNNAC	1 cut(s)	387
Hpy188I	TCNGA	3 cut(s)	103, 457, 494
Hpy188III	TCNNGA	3 cut(s)	89, 338, 607
Hpy8I	GTNNAC	1 cut(s)	387
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	3 cut(s)	136, 327, 520
HpyCH4IV	ACGT	1 cut(s)	146
HpyCH4V	TGCA	3 cut(s)	263, 485, 500
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 212, 485
HpyF3I	CTNAG	1 cut(s)	462
HpySE526I	ACGT	1 cut(s)	146
Hsp92II	CATG	1 cut(s)	559
KpnI	GGTACC	2 cut(s)	348, 594
Ksp22I	TGATCA	1 cut(s)	33
Kzo9I	GATC	8 cut(s)	33, 85, 181, 363, 409, 457, 558, 603
LmnI	GCTCC	1 cut(s)	193
Lsp1109I	GCAGC	1 cut(s)	497
LweI	GCATC	1 cut(s)	183
MaeI	CTAG	3 cut(s)	77, 507, 628
MaeII	ACGT	1 cut(s)	146
MaeIII	GTNAC	1 cut(s)	514
MalI	GATC	8 cut(s)	35, 87, 183, 365, 411, 459, 560, 605
MbiI	CCGCTC	1 cut(s)	236
MboI	GATC	8 cut(s)	33, 85, 181, 363, 409, 457, 558, 603
MboII	GAAGA	4 cut(s)	142, 169, 326, 613
MflI	RGATCY	2 cut(s)	409, 457
MlsI	TGGCCA	2 cut(s)	56, 246
MluCI	AATT	2 cut(s)	121, 451
MluNI	TGGCCA	2 cut(s)	56, 246
MnlI	CCTC	4 cut(s)	201, 288, 309, 471
Mox20I	TGGCCA	2 cut(s)	56, 246
MscI	TGGCCA	2 cut(s)	56, 246
MseI	TTAA	2 cut(s)	201, 576
Msp20I	TGGCCA	2 cut(s)	56, 246
MspI	CCGG	1 cut(s)	543
Mva1269I	GAATGC	1 cut(s)	488
MwoI	GCNNNNNNNGC	3 cut(s)	77, 212, 485
NdeII	GATC	8 cut(s)	33, 85, 181, 363, 409, 457, 558, 603
NlaIII	CATG	1 cut(s)	559
NlaIV	GGNNCC	4 cut(s)	346, 459, 541, 592
NspV	TTCGAA	1 cut(s)	63
PctI	GAATGC	1 cut(s)	488
PfeI	GAWTC	2 cut(s)	22, 546
PkrI	GCNGC	1 cut(s)	487
Psp1406I	AACGTT	1 cut(s)	146
PspN4I	GGNNCC	4 cut(s)	346, 459, 541, 592
PstNI	CAGNNNCTG	1 cut(s)	476
PsuI	RGATCY	2 cut(s)	409, 457
RsaI	GTAC	5 cut(s)	30, 75, 346, 449, 592
RsaNI	GTAC	5 cut(s)	29, 74, 345, 448, 591
SaqAI	TTAA	2 cut(s)	201, 576
SatI	GCNGC	1 cut(s)	486
Sau3AI	GATC	8 cut(s)	33, 85, 181, 363, 409, 457, 558, 603
ScaI	AGTACT	2 cut(s)	30, 75
SetI	ASST	6 cut(s)	62, 149, 190, 301, 350, 399
SfaNI	GCATC	1 cut(s)	183
SfuI	TTCGAA	1 cut(s)	63
Sse9I	AATT	2 cut(s)	121, 451
SsiI	CCGC	2 cut(s)	234, 307
SspMI	CTAG	3 cut(s)	77, 507, 628
StyI	CCWWGG	2 cut(s)	51, 348
TaaI	ACNGT	3 cut(s)	136, 327, 520
TaiI	ACGT	1 cut(s)	149
TaqI	TCGA	3 cut(s)	63, 180, 366
TasI	AATT	2 cut(s)	121, 451
TatI	WGTACW	3 cut(s)	28, 73, 447
TfiI	GAWTC	2 cut(s)	22, 546
Tru1I	TTAA	2 cut(s)	201, 576
Tru9I	TTAA	2 cut(s)	201, 576
TscAI	CASTG	5 cut(s)	166, 226, 270, 481, 625
TseI	GCWGC	1 cut(s)	485
TspRI	CASTG	5 cut(s)	166, 226, 270, 481, 625
XagI	CCTNNNNNAGG	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	386
XspI	CTAG	3 cut(s)	77, 507, 628
ZrmI	AGTACT	2 cut(s)	30, 75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.