Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001836.1

Orthogroup ID

OG0004244

Physical Location & Seq

Genomic Coordinates Reverse (-)

6422 .. 7048

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001836.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atgactatgaggttggttcaattaatgatgatgatgatcatattagtacttgctttggccacctccaaaagggtcttagcaagtgatcctgacattctctctgattatttactgcctcaaaatagctcaactgctaatgctacctattttacatacactggattccgcgagatatttgatcaaacacctgaaacctttaaggcaacaaaagccagtatggtggagttccccgctctcaatggccagagtgtgtcatatacagtgcttcaattccctccaagcacactgttcccacctcacacccgccctgatgctactggacttttgttccttcttgctggttccttagaagtcgggttcattgacacaaacaatgtcctatacactcaaaagcttcaggctggagatatatttatatttcccaagggtttaatccattatcagtataactctgatcctcagttgcgagctaccgccattgcagcatttggaagtgcaagtgctagagcagttacagtgccaccttctgtttttacctcgggtgtcgacgatgtcatccttgccaaatctttcaagactgatgttgataccattaagaagattaaggatggtctcactactagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016197 GO:0019538 GO:0019941 GO:0030163 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

208

Amino Acids

22.72

Weight (kDa)

6.08

Isoelectric Point (pI)

27.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004244)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g08370 FvH4_7g08383 FvH4_7g08390
malus_domestica	MD07G1084100.v1.1
prunus_persica	Prupe.2G111000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0340191 RchiOBHm_Chr1g0340211 RchiOBHm_Chr1g0340251
rosa_laevigata	RLG00000029004 RLG00000029005 RLG00000029007
rosa_multiflora	Rmu_co8401649.1_g000001 Rmu_sc0001836.1_g000001 Rmu_sc0001836.1_g000002 Rmu_sc0001836.1_g000005 Rmu_sc0005193.1_g000011 Rmu_sc0005193.1_g000016 Rmu_sc0005193.1_g000018
rosa_roxburghii	Rroxscaffold_4G00311090
rosa_rugosa	Rorug01G0164700.1 Rorug01G0165000 Rorug01G0165100
rosa_samantha	Rh1AG179300 Rh1AG179700 Rh1BG147500 Rh1BG147700 Rh1BG147900 Rh1CG166200 Rh1DG179400 Rh1DG179500 Rh1DG179900
rosa_wichuraiana	Rw1G014940 Rw1G014960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	233
AccI	GTMKAC	1 cut(s)	546
AccII	CGCG	1 cut(s)	168
AciI	CCGC	4 cut(s)	166, 231, 304, 474
AclWI	GGATC	2 cut(s)	80, 449
AcoI	YGGCCR	2 cut(s)	57, 241
AcuI	CTGAAG	1 cut(s)	380
AfaI	GTAC	1 cut(s)	48
AfiI	CCNNNNNNNGG	1 cut(s)	69
AgsI	TTSAA	3 cut(s)	20, 269, 574
AluBI	AGCT	4 cut(s)	126, 394, 470, 624
AluI	AGCT	4 cut(s)	126, 394, 470, 624
Alw26I	GTCTC	1 cut(s)	617
AlwI	GGATC	2 cut(s)	80, 449
Ama87I	CYCGRG	1 cut(s)	538
AoxI	GGCC	2 cut(s)	57, 241
ApeKI	GCWGC	1 cut(s)	482
AseI	ATTAAT	1 cut(s)	23
AvaI	CYCGRG	1 cut(s)	538
BalI	TGGCCA	2 cut(s)	59, 243
BbvI	GCAGC	1 cut(s)	494
BccI	CCATC	1 cut(s)	602
BclI	TGATCA	2 cut(s)	36, 178
BcoDI	GTCTC	1 cut(s)	617
BfaI	CTAG	2 cut(s)	504, 621
BisI	GCNGC	1 cut(s)	483
BlsI	GCNGC	1 cut(s)	484
BmcAI	AGTACT	1 cut(s)	48
BmeT110I	CYCGRG	1 cut(s)	538
BmiI	GGNNCC	1 cut(s)	343
BmsI	GCATC	1 cut(s)	301
BpmI	CTGGAG	1 cut(s)	423
BsaBI	GATNNNNATC	1 cut(s)	35
BsaI	GGTCTC	1 cut(s)	617
BsaJI	CCNNGG	2 cut(s)	423, 537
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
Bse1I	ACTGG	3 cut(s)	163, 213, 322
Bse3DI	GCAATG	1 cut(s)	477
Bse8I	GATNNNNATC	1 cut(s)	35
BseDI	CCNNGG	2 cut(s)	423, 537
BseGI	GGATG	2 cut(s)	555, 613
BseJI	GATNNNNATC	1 cut(s)	35
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseMI	GCAATG	1 cut(s)	477
BseMII	CTCAG	1 cut(s)	473
BseNI	ACTGG	3 cut(s)	163, 213, 322
BseXI	GCAGC	1 cut(s)	494
Bsh1236I	CGCG	1 cut(s)	168
BshFI	GGCC	2 cut(s)	59, 243
BsiHKCI	CYCGRG	1 cut(s)	538
BslI	CCNNNNNNNGG	1 cut(s)	69
BsmAI	GTCTC	1 cut(s)	617
BsnI	GGCC	2 cut(s)	59, 243
Bso31I	GGTCTC	1 cut(s)	617
BsoBI	CYCGRG	1 cut(s)	538
Bsp143I	GATC	4 cut(s)	36, 85, 178, 454
BspACI	CCGC	4 cut(s)	166, 231, 304, 474
BspANI	GGCC	2 cut(s)	59, 243
BspCNI	CTCAG	1 cut(s)	472
BspFNI	CGCG	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	343
BspPI	GGATC	2 cut(s)	80, 449
BspTNI	GGTCTC	1 cut(s)	617
BsrBI	CCGCTC	1 cut(s)	233
BsrDI	GCAATG	1 cut(s)	477
BsrI	ACTGG	3 cut(s)	163, 213, 322
BssECI	CCNNGG	2 cut(s)	423, 537
BssMI	GATC	4 cut(s)	36, 85, 178, 454
BssT1I	CCWWGG	1 cut(s)	423
Bst4CI	ACNGT	3 cut(s)	262, 288, 517
BstC8I	GCNNGC	1 cut(s)	468
BstDEI	CTNAG	3 cut(s)	76, 346, 459
BstENI	CCTNNNNNAGG	1 cut(s)	67
BstF5I	GGATG	2 cut(s)	555, 613
BstFNI	CGCG	1 cut(s)	168
BstKTI	GATC	4 cut(s)	39, 88, 181, 457
BstMAI	GTCTC	1 cut(s)	617
BstMBI	GATC	4 cut(s)	36, 85, 178, 454
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 482
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	494
BstXI	CCANNNNNNTGG	1 cut(s)	220
BsuRI	GGCC	2 cut(s)	59, 243
BtsCI	GGATG	2 cut(s)	555, 613
BtsIMutI	CAGTG	4 cut(s)	156, 267, 284, 522
Cac8I	GCNNGC	1 cut(s)	468
Csp6I	GTAC	1 cut(s)	47
CviJI	RGCY	8 cut(s)	59, 126, 212, 243, 394, 401, 470, 624
CviKI_1	RGCY	8 cut(s)	59, 126, 212, 243, 394, 401, 470, 624
CviQI	GTAC	1 cut(s)	47
DdeI	CTNAG	3 cut(s)	76, 346, 459
DpnI	GATC	4 cut(s)	38, 87, 180, 456
DpnII	GATC	4 cut(s)	36, 85, 178, 454
EaeI	YGGCCR	2 cut(s)	57, 241
Eco130I	CCWWGG	1 cut(s)	423
Eco31I	GGTCTC	1 cut(s)	617
Eco57I	CTGAAG	1 cut(s)	380
Eco88I	CYCGRG	1 cut(s)	538
EcoNI	CCTNNNNNAGG	1 cut(s)	67
EcoT14I	CCWWGG	1 cut(s)	423
ErhI	CCWWGG	1 cut(s)	423
FauI	CCCGC	2 cut(s)	238, 311
FbaI	TGATCA	2 cut(s)	36, 178
FblI	GTMKAC	1 cut(s)	546
Fnu4HI	GCNGC	1 cut(s)	483
FokI	GGATG	2 cut(s)	542, 620
Fsp4HI	GCNGC	1 cut(s)	483
FspBI	CTAG	2 cut(s)	504, 621
GluI	GCNGC	1 cut(s)	483
GsuI	CTGGAG	1 cut(s)	423
HaeIII	GGCC	2 cut(s)	59, 243
HincII	GTYRAC	1 cut(s)	547
HindII	GTYRAC	1 cut(s)	547
HindIII	AAGCTT	1 cut(s)	392
HinfI	GANTC	1 cut(s)	162
Hpy166II	GTNNAC	1 cut(s)	547
Hpy188I	TCNGA	2 cut(s)	103, 454
Hpy188III	TCNNGA	2 cut(s)	89, 574
Hpy8I	GTNNAC	1 cut(s)	547
Hpy99I	CGWCG	1 cut(s)	551
HpyAV	CCTTC	2 cut(s)	341, 534
HpyCH4III	ACNGT	3 cut(s)	262, 288, 517
HpyCH4V	TGCA	2 cut(s)	482, 497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 482
HpyF3I	CTNAG	3 cut(s)	76, 346, 459
Ksp22I	TGATCA	2 cut(s)	36, 178
Kzo9I	GATC	4 cut(s)	36, 85, 178, 454
Lsp1109I	GCAGC	1 cut(s)	494
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	2 cut(s)	504, 621
MaeIII	GTNAC	1 cut(s)	511
MalI	GATC	4 cut(s)	38, 87, 180, 456
MbiI	CCGCTC	1 cut(s)	233
MboI	GATC	4 cut(s)	36, 85, 178, 454
MboII	GAAGA	1 cut(s)	610
MlsI	TGGCCA	2 cut(s)	59, 243
MluCI	AATT	2 cut(s)	20, 269
MluNI	TGGCCA	2 cut(s)	59, 243
MnlI	CCTC	7 cut(s)	3, 73, 126, 285, 306, 468, 547
Mox20I	TGGCCA	2 cut(s)	59, 243
MscI	TGGCCA	2 cut(s)	59, 243
MseI	TTAA	5 cut(s)	23, 198, 431, 594, 603
Msp20I	TGGCCA	2 cut(s)	59, 243
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	2 cut(s)	209, 482
NdeII	GATC	4 cut(s)	36, 85, 178, 454
NlaIV	GGNNCC	1 cut(s)	343
PfeI	GAWTC	1 cut(s)	162
PflFI	GACNNNGTC	1 cut(s)	551
PkrI	GCNGC	1 cut(s)	484
PshBI	ATTAAT	1 cut(s)	23
PspN4I	GGNNCC	1 cut(s)	343
PsyI	GACNNNGTC	1 cut(s)	551
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
SalI	GTCGAC	1 cut(s)	545
SaqAI	TTAA	5 cut(s)	23, 198, 431, 594, 603
SatI	GCNGC	1 cut(s)	483
Sau3AI	GATC	4 cut(s)	36, 85, 178, 454
ScaI	AGTACT	1 cut(s)	48
SfaNI	GCATC	1 cut(s)	301
Sse9I	AATT	2 cut(s)	20, 269
SsiI	CCGC	4 cut(s)	166, 231, 304, 474
SspMI	CTAG	2 cut(s)	504, 621
StyI	CCWWGG	1 cut(s)	423
TaaI	ACNGT	3 cut(s)	262, 288, 517
TaqI	TCGA	1 cut(s)	546
TasI	AATT	2 cut(s)	20, 269
TatI	WGTACW	1 cut(s)	46
TfiI	GAWTC	1 cut(s)	162
Tru1I	TTAA	5 cut(s)	23, 198, 431, 594, 603
Tru9I	TTAA	5 cut(s)	23, 198, 431, 594, 603
TscAI	CASTG	4 cut(s)	163, 267, 291, 522
TseI	GCWGC	1 cut(s)	482
TspDTI	ATGAA	1 cut(s)	349
TspRI	CASTG	4 cut(s)	163, 267, 291, 522
Tth111I	GACNNNGTC	1 cut(s)	551
VspI	ATTAAT	1 cut(s)	23
XagI	CCTNNNNNAGG	1 cut(s)	67
XmiI	GTMKAC	1 cut(s)	546
XspI	CTAG	2 cut(s)	504, 621
ZrmI	AGTACT	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.