FvH4_7g12380

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0007529
Physical Location & Seq
Reverse (-)
11257869 .. 11258442
574 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g12380.t1

Sequence Viewer

Length: 378 bp
ATGCAGATGGCACAATGCAGTACTGCCCTGGTTGTCATTGCGTTTCTGCTGGTTTCTCTGAGCATGGTTTTGGCAGATCAATACATTGTCGGGGATATTGGCTGGGGAGAACAAGGAGTTGATTACAATGCTTGGGCCGCTAGCAATACTTTCTATACTGGAGATGTTTTGATTTTTCATTACGATCCAACCTCCCACAATGTCGTTGTAGCGACTGGTTCTGATACGTTTGATAATTGCGTTACGCATCCCAACTTGGGTATTTATACCACAGCAAATGACGAGTTACATTTGAATGATCCTGGAACCTACTATTTCATATGTGAATTTCAGTGCGGTGTAGATGACATGAAGATGATGGTCACAGTGAACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

126

Amino Acids

13.78

Weight (kDa)

4.05

Isoelectric Point (pI)

11.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 38 - 111 4.9e-19 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 138, 336
AclWI GGATC 2 cut(s) 179, 293
AcsI RAATTY 1 cut(s) 326
AfaI GTAC 1 cut(s) 22
AfiI CCNNNNNNNGG 1 cut(s) 257
AgsI TTSAA 1 cut(s) 295
AjnI CCWGG 2 cut(s) 27, 301
AlwI GGATC 2 cut(s) 179, 293
AoxI GGCC 1 cut(s) 135
ApoI RAATTY 1 cut(s) 326
AspS9I GGNCC 1 cut(s) 135
AsuNHI GCTAGC 1 cut(s) 140
BccI CCATC 1 cut(s) 352
BciT130I CCWGG 2 cut(s) 29, 303
BfaI CTAG 2 cut(s) 141, 376
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
BmcAI AGTACT 1 cut(s) 22
Bme1390I CCNGG 2 cut(s) 29, 303
BmgT120I GGNCC 1 cut(s) 135
BmiI GGNNCC 1 cut(s) 307
BmrFI CCNGG 2 cut(s) 29, 303
BmsI GCATC 1 cut(s) 256
BmtI GCTAGC 1 cut(s) 144
BpmI CTGGAG 1 cut(s) 180
BsaJI CCNNGG 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 257
Bse1I ACTGG 2 cut(s) 163, 220
Bse3DI GCAATG 1 cut(s) 36
BseBI CCWGG 2 cut(s) 29, 303
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 1 cut(s) 257
BseMI GCAATG 1 cut(s) 36
BseMII CTCAG 1 cut(s) 50
BseNI ACTGG 2 cut(s) 163, 220
BseYI CCCAGC 1 cut(s) 102
BshFI GGCC 1 cut(s) 137
BslI CCNNNNNNNGG 1 cut(s) 257
BsnI GGCC 1 cut(s) 137
Bsp143I GATC 3 cut(s) 76, 184, 298
BspACI CCGC 2 cut(s) 138, 336
BspANI GGCC 1 cut(s) 137
BspCNI CTCAG 1 cut(s) 51
BspLI GGNNCC 1 cut(s) 307
BspOI GCTAGC 1 cut(s) 144
BspPI GGATC 2 cut(s) 179, 293
BsrDI GCAATG 1 cut(s) 36
BsrI ACTGG 2 cut(s) 163, 220
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 3 cut(s) 76, 184, 298
Bst2UI CCWGG 2 cut(s) 29, 303
Bst4CI ACNGT 1 cut(s) 367
BstC8I GCNNGC 1 cut(s) 142
BstDEI CTNAG 1 cut(s) 59
BstF5I GGATG 1 cut(s) 247
BstKTI GATC 3 cut(s) 79, 187, 301
BstMBI GATC 3 cut(s) 76, 184, 298
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstNI CCWGG 2 cut(s) 29, 303
BstSCI CCNGG 2 cut(s) 27, 301
BsuRI GGCC 1 cut(s) 137
BtsCI GGATG 1 cut(s) 247
BtsIMutI CAGTG 2 cut(s) 338, 372
Cac8I GCNNGC 1 cut(s) 142
Cfr13I GGNCC 1 cut(s) 135
Csp6I GTAC 1 cut(s) 21
CviAII CATG 2 cut(s) 64, 349
CviJI RGCY 2 cut(s) 102, 137
CviKI_1 RGCY 2 cut(s) 102, 137
CviQI GTAC 1 cut(s) 21
DdeI CTNAG 1 cut(s) 59
DpnI GATC 3 cut(s) 78, 186, 300
DpnII GATC 3 cut(s) 76, 184, 298
EcoRII CCWGG 2 cut(s) 27, 301
FaeI CATG 2 cut(s) 67, 352
FaiI YATR 6 cut(s) 65, 156, 267, 320, 322, 350
FatI CATG 2 cut(s) 63, 348
FauNDI CATATG 1 cut(s) 320
Fnu4HI GCNGC 1 cut(s) 138
FokI GGATG 1 cut(s) 234
Fsp4HI GCNGC 1 cut(s) 138
FspBI CTAG 2 cut(s) 141, 376
GluI GCNGC 1 cut(s) 138
GsaI CCCAGC 1 cut(s) 106
GsuI CTGGAG 1 cut(s) 180
HaeIII GGCC 1 cut(s) 137
Hin1II CATG 2 cut(s) 67, 352
Hpy166II GTNNAC 1 cut(s) 370
Hpy188I TCNGA 2 cut(s) 60, 223
Hpy8I GTNNAC 1 cut(s) 370
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4IV ACGT 1 cut(s) 227
HpyCH4V TGCA 2 cut(s) 4, 18
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 1 cut(s) 59
HpySE526I ACGT 1 cut(s) 227
Hsp92II CATG 2 cut(s) 67, 352
Kzo9I GATC 3 cut(s) 76, 184, 298
LpnPI CCDG 8 cut(s) 14, 35, 41, 88, 144, 201, 288, 315
LweI GCATC 1 cut(s) 256
MaeI CTAG 2 cut(s) 141, 376
MaeII ACGT 1 cut(s) 227
MaeIII GTNAC 3 cut(s) 241, 285, 361
MalI GATC 3 cut(s) 78, 186, 300
MboI GATC 3 cut(s) 76, 184, 298
MboII GAAGA 1 cut(s) 364
MluCI AATT 2 cut(s) 235, 326
MmeI TCCRAC 1 cut(s) 212
MnlI CCTC 1 cut(s) 202
MslI CAYNNNNRTG 2 cut(s) 294, 353
MspR9I CCNGG 2 cut(s) 29, 303
MvaI CCWGG 2 cut(s) 29, 303
MwoI GCNNNNNNNGC 1 cut(s) 137
NdeI CATATG 1 cut(s) 320
NdeII GATC 3 cut(s) 76, 184, 298
NheI GCTAGC 1 cut(s) 140
NlaIII CATG 2 cut(s) 67, 352
NlaIV GGNNCC 1 cut(s) 307
NmuCI GTSAC 1 cut(s) 361
PfoI TCCNGGA 1 cut(s) 301
PkrI GCNGC 1 cut(s) 139
Psp6I CCWGG 2 cut(s) 27, 301
PspFI CCCAGC 1 cut(s) 102
PspGI CCWGG 2 cut(s) 27, 301
PspN4I GGNNCC 1 cut(s) 307
PspPI GGNCC 1 cut(s) 135
RsaI GTAC 1 cut(s) 22
RsaNI GTAC 1 cut(s) 21
RseI CAYNNNNRTG 2 cut(s) 294, 353
SatI GCNGC 1 cut(s) 138
Sau3AI GATC 3 cut(s) 76, 184, 298
Sau96I GGNCC 1 cut(s) 135
ScaI AGTACT 1 cut(s) 22
ScrFI CCNGG 2 cut(s) 29, 303
SetI ASST 3 cut(s) 194, 230, 311
SfaNI GCATC 1 cut(s) 256
SmiMI CAYNNNNRTG 2 cut(s) 294, 353
Sse9I AATT 2 cut(s) 235, 326
SsiI CCGC 2 cut(s) 138, 336
SspMI CTAG 2 cut(s) 141, 376
StyD4I CCNGG 2 cut(s) 27, 301
TaaI ACNGT 1 cut(s) 367
TaiI ACGT 1 cut(s) 230
TasI AATT 2 cut(s) 235, 326
TatI WGTACW 1 cut(s) 20
TauI GCSGC 1 cut(s) 140
TscAI CASTG 2 cut(s) 338, 372
TseFI GTSAC 1 cut(s) 361
Tsp45I GTSAC 1 cut(s) 361
TspDTI ATGAA 3 cut(s) 167, 307, 365
TspRI CASTG 2 cut(s) 338, 372
XapI RAATTY 1 cut(s) 326
XspI CTAG 2 cut(s) 141, 376
ZrmI AGTACT 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.