Rw1G020730

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0007529
Physical Location & Seq
Reverse (-)
44413597 .. 44414403
807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G020730.1

Sequence Viewer

Length: 357 bp
ATGGCAGTGGCACAATACTCGGCTCTTGCTCTGATTGCGTTTCTGGTTTCTCCGATCATGGTGATGGCAAATTCATACGAAGTTGACTGGGCAACTGGGGTTGATTTCGCTGAGTTTGCTACTCAGAACACTTTCTTTGCTGGAGATGTATTGAATTTTCATTATGATTGTGTTCATAACAATGTGGTTATAGCAACCGATGGTGATAAATTTGATCAATGCGAGATGGAACCGAACTTGGGTTATTATCAAAGTGGCAATGAAGCATTTACCTTGGGTGAAGCTGGATACTATTATTTCATGTGCGGGTATCACTGCAAATCTGATGGCATGAAAATGTCAGTGTTTGTGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

118

Amino Acids

13.18

Weight (kDa)

4.23

Isoelectric Point (pI)

26.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 30 - 108 3e-12 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 306
AcsI RAATTY 3 cut(s) 70, 154, 209
AfiI CCNNNNNNNGG 1 cut(s) 239
AgsI TTSAA 1 cut(s) 154
AluBI AGCT 1 cut(s) 284
AluI AGCT 1 cut(s) 284
Alw21I GWGCWC 1 cut(s) 354
Alw44I GTGCAC 1 cut(s) 350
ApaLI GTGCAC 1 cut(s) 350
ApoI RAATTY 3 cut(s) 70, 154, 209
Asp700I GAANNNNTTC 1 cut(s) 131
AsuHPI GGTGA 3 cut(s) 73, 215, 290
BaeGI GKGCMC 1 cut(s) 354
Bbv12I GWGCWC 1 cut(s) 354
BccI CCATC 4 cut(s) 58, 194, 220, 320
BcgI CGANNNNNNTGC 1 cut(s) 34
BciVI GTATCC 1 cut(s) 281
BclI TGATCA 1 cut(s) 214
BfaI CTAG 1 cut(s) 355
BfuI GTATCC 1 cut(s) 281
BmiI GGNNCC 1 cut(s) 231
BmrI ACTGGG 2 cut(s) 97, 105
BmuI ACTGGG 2 cut(s) 97, 105
BpmI CTGGAG 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 273
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse1I ACTGG 2 cut(s) 92, 100
Bse3DI GCAATG 1 cut(s) 265
BseDI CCNNGG 1 cut(s) 273
BseLI CCNNNNNNNGG 1 cut(s) 239
BseMI GCAATG 1 cut(s) 265
BseMII CTCAG 2 cut(s) 102, 137
BseNI ACTGG 2 cut(s) 92, 100
BseSI GKGCMC 1 cut(s) 354
BsiHKAI GWGCWC 1 cut(s) 354
BslI CCNNNNNNNGG 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 354
Bsp143I GATC 2 cut(s) 54, 214
BspACI CCGC 1 cut(s) 306
BspCNI CTCAG 2 cut(s) 103, 136
BspLI GGNNCC 1 cut(s) 231
BsrDI GCAATG 1 cut(s) 265
BsrI ACTGG 2 cut(s) 92, 100
BssECI CCNNGG 1 cut(s) 273
BssMI GATC 2 cut(s) 54, 214
BssT1I CCWWGG 1 cut(s) 273
BstDEI CTNAG 2 cut(s) 111, 123
BstKTI GATC 2 cut(s) 57, 217
BstMBI GATC 2 cut(s) 54, 214
BstMWI GCNNNNNNNGC 2 cut(s) 35, 116
BstSLI GKGCMC 1 cut(s) 354
BsuI GTATCC 1 cut(s) 281
BtsI GCAGTG 2 cut(s) 12, 313
BtsIMutI CAGTG 3 cut(s) 12, 313, 348
CviAII CATG 3 cut(s) 58, 301, 331
CviJI RGCY 2 cut(s) 23, 284
CviKI_1 RGCY 2 cut(s) 23, 284
DdeI CTNAG 2 cut(s) 111, 123
DpnI GATC 2 cut(s) 56, 216
DpnII GATC 2 cut(s) 54, 214
Eco130I CCWWGG 1 cut(s) 273
EcoT14I CCWWGG 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 3 cut(s) 61, 304, 334
FaiI YATR 7 cut(s) 59, 76, 165, 177, 191, 302, 332
FatI CATG 3 cut(s) 57, 300, 330
FauI CCCGC 1 cut(s) 299
FbaI TGATCA 1 cut(s) 214
FspBI CTAG 1 cut(s) 355
GsuI CTGGAG 1 cut(s) 162
Hin1II CATG 3 cut(s) 61, 304, 334
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HphI GGTGA 3 cut(s) 73, 215, 290
Hpy166II GTNNAC 2 cut(s) 85, 352
Hpy188I TCNGA 4 cut(s) 33, 54, 126, 325
Hpy8I GTNNAC 2 cut(s) 85, 352
HpyCH4V TGCA 2 cut(s) 318, 352
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 116
HpyF3I CTNAG 2 cut(s) 111, 123
Hsp92II CATG 3 cut(s) 61, 304, 334
Ksp22I TGATCA 1 cut(s) 214
Kzo9I GATC 2 cut(s) 54, 214
LpnPI CCDG 5 cut(s) 29, 73, 81, 126, 270
MaeI CTAG 1 cut(s) 355
MalI GATC 2 cut(s) 56, 216
MboI GATC 2 cut(s) 54, 214
MhlI GDGCHC 1 cut(s) 354
MluCI AATT 3 cut(s) 70, 154, 209
MroXI GAANNNNTTC 1 cut(s) 131
MslI CAYNNNNRTG 3 cut(s) 62, 180, 335
MwoI GCNNNNNNNGC 2 cut(s) 35, 116
NdeII GATC 2 cut(s) 54, 214
NlaIII CATG 3 cut(s) 61, 304, 334
NlaIV GGNNCC 1 cut(s) 231
PdmI GAANNNNTTC 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 231
RseI CAYNNNNRTG 3 cut(s) 62, 180, 335
Sau3AI GATC 2 cut(s) 54, 214
SduI GDGCHC 1 cut(s) 354
SetI ASST 2 cut(s) 275, 286
SmiMI CAYNNNNRTG 3 cut(s) 62, 180, 335
Sse9I AATT 3 cut(s) 70, 154, 209
SsiI CCGC 1 cut(s) 306
SspMI CTAG 1 cut(s) 355
StyI CCWWGG 1 cut(s) 273
TasI AATT 3 cut(s) 70, 154, 209
TscAI CASTG 3 cut(s) 12, 320, 348
TspDTI ATGAA 6 cut(s) 63, 149, 164, 276, 289, 347
TspRI CASTG 3 cut(s) 12, 320, 348
VneI GTGCAC 1 cut(s) 350
XapI RAATTY 3 cut(s) 70, 154, 209
XmnI GAANNNNTTC 1 cut(s) 131
XspI CTAG 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.