Rroxscaffold_4G00303980

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0007529
Physical Location & Seq
Forward (+)
24584672 .. 24587974
3303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00303980.1

Sequence Viewer

Length: 387 bp
ATGCGGATGGCGGTCATGGCACAATCTTGTCTTGCTCTTGTTGTCATTGCGTTTCTGCTGATTTCTCCGAGCATGTTGTTGGCAGATCAATATATTGTTGGAGATAGTGGCTGGGGAATTTATACCTTTGATTACAATGCTTGGGCTGCTAGCCATACTTTCTATACTGGAGATTCTTTGATTTTTCATTACGACCCAATGCTCCACAATGTCATTGTGGCGACTGATTCCGATGCGTTTGATAATTGCGTTGTGGAACCCAACTTGGGTGTGTACACCACTGCAAATGACCTGCTATATTTGAATGACCCTGGAAACTACTATTTCATGTGTAAATTTCATTGTGTTGAAACTGACATGAAGATGCTGGTCACAGTGAACAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

128

Amino Acids

14.4

Weight (kDa)

4.33

Isoelectric Point (pI)

36.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 41 - 114 1.9e-17 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 300
AciI CCGC 2 cut(s) 4, 11
AcsI RAATTY 2 cut(s) 117, 335
AfaI GTAC 1 cut(s) 275
AfiI CCNNNNNNNGG 1 cut(s) 266
AgsI TTSAA 2 cut(s) 304, 350
AjnI CCWGG 1 cut(s) 310
ApeKI GCWGC 1 cut(s) 146
ApoI RAATTY 2 cut(s) 117, 335
AsuNHI GCTAGC 1 cut(s) 149
BbvI GCAGC 1 cut(s) 133
BciT130I CCWGG 1 cut(s) 312
BfaI CTAG 1 cut(s) 150
BfuAI ACCTGC 1 cut(s) 300
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
Bme1390I CCNGG 1 cut(s) 312
BmiI GGNNCC 1 cut(s) 258
BmrFI CCNGG 1 cut(s) 312
BmsI GCATC 2 cut(s) 223, 354
BmtI GCTAGC 1 cut(s) 153
BpmI CTGGAG 1 cut(s) 189
BsaJI CCNNGG 1 cut(s) 310
Bsc4I CCNNNNNNNGG 1 cut(s) 266
Bse1I ACTGG 1 cut(s) 172
Bse3DI GCAATG 1 cut(s) 45
BseBI CCWGG 1 cut(s) 312
BseDI CCNNGG 1 cut(s) 310
BseGI GGATG 1 cut(s) 12
BseLI CCNNNNNNNGG 1 cut(s) 266
BseMI GCAATG 1 cut(s) 45
BseNI ACTGG 1 cut(s) 172
BseXI GCAGC 1 cut(s) 133
BseYI CCCAGC 1 cut(s) 111
BslI CCNNNNNNNGG 1 cut(s) 266
Bsp1407I TGTACA 1 cut(s) 273
Bsp143I GATC 1 cut(s) 85
BspACI CCGC 2 cut(s) 4, 11
BspLI GGNNCC 1 cut(s) 258
BspMI ACCTGC 1 cut(s) 300
BspOI GCTAGC 1 cut(s) 153
BsrDI GCAATG 1 cut(s) 45
BsrGI TGTACA 1 cut(s) 273
BsrI ACTGG 1 cut(s) 172
BssECI CCNNGG 1 cut(s) 310
BssMI GATC 1 cut(s) 85
Bst2UI CCWGG 1 cut(s) 312
Bst4CI ACNGT 1 cut(s) 376
BstAUI TGTACA 1 cut(s) 273
BstC8I GCNNGC 1 cut(s) 151
BstF5I GGATG 1 cut(s) 12
BstKTI GATC 1 cut(s) 88
BstMBI GATC 1 cut(s) 85
BstMWI GCNNNNNNNGC 2 cut(s) 17, 146
BstNI CCWGG 1 cut(s) 312
BstNSI RCATGY 1 cut(s) 76
BstSCI CCNGG 1 cut(s) 310
BstV1I GCAGC 1 cut(s) 133
BtsCI GGATG 1 cut(s) 12
BtsI GCAGTG 1 cut(s) 279
BtsIMutI CAGTG 2 cut(s) 279, 381
BveI ACCTGC 1 cut(s) 300
Cac8I GCNNGC 1 cut(s) 151
Csp6I GTAC 1 cut(s) 274
CviAII CATG 4 cut(s) 16, 73, 328, 358
CviJI RGCY 3 cut(s) 111, 146, 153
CviKI_1 RGCY 3 cut(s) 111, 146, 153
CviQI GTAC 1 cut(s) 274
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 310
FaeI CATG 4 cut(s) 19, 76, 331, 361
FaiI YATR 9 cut(s) 17, 74, 93, 123, 156, 165, 298, 329, 359
FatI CATG 4 cut(s) 15, 72, 327, 357
Fnu4HI GCNGC 1 cut(s) 147
FokI GGATG 1 cut(s) 19
Fsp4HI GCNGC 1 cut(s) 147
FspBI CTAG 1 cut(s) 150
GluI GCNGC 1 cut(s) 147
GsaI CCCAGC 1 cut(s) 115
GsuI CTGGAG 1 cut(s) 189
Hin1II CATG 4 cut(s) 19, 76, 331, 361
HinfI GANTC 2 cut(s) 173, 227
Hpy166II GTNNAC 3 cut(s) 274, 276, 379
Hpy188I TCNGA 2 cut(s) 69, 232
Hpy8I GTNNAC 3 cut(s) 274, 276, 379
HpyCH4III ACNGT 1 cut(s) 376
HpyCH4V TGCA 1 cut(s) 284
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 146
Hsp92II CATG 4 cut(s) 19, 76, 331, 361
Kzo9I GATC 1 cut(s) 85
LmnI GCTCC 1 cut(s) 207
LpnPI CCDG 6 cut(s) 97, 153, 297, 305, 324, 353
Lsp1109I GCAGC 1 cut(s) 133
LweI GCATC 2 cut(s) 223, 354
MaeI CTAG 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 370
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MboII GAAGA 1 cut(s) 373
MluCI AATT 3 cut(s) 117, 244, 335
MmeI TCCRAC 1 cut(s) 79
MslI CAYNNNNRTG 1 cut(s) 362
MspR9I CCNGG 1 cut(s) 312
MvaI CCWGG 1 cut(s) 312
MwoI GCNNNNNNNGC 2 cut(s) 17, 146
NdeII GATC 1 cut(s) 85
NheI GCTAGC 1 cut(s) 149
NlaIII CATG 4 cut(s) 19, 76, 331, 361
NlaIV GGNNCC 1 cut(s) 258
NmuCI GTSAC 1 cut(s) 370
NspI RCATGY 1 cut(s) 76
PfeI GAWTC 2 cut(s) 173, 227
PkrI GCNGC 1 cut(s) 148
Psp6I CCWGG 1 cut(s) 310
PspFI CCCAGC 1 cut(s) 111
PspGI CCWGG 1 cut(s) 310
PspN4I GGNNCC 1 cut(s) 258
RsaI GTAC 1 cut(s) 275
RsaNI GTAC 1 cut(s) 274
RseI CAYNNNNRTG 1 cut(s) 362
SatI GCNGC 1 cut(s) 147
Sau3AI GATC 1 cut(s) 85
ScrFI CCNGG 1 cut(s) 312
SetI ASST 2 cut(s) 128, 294
SfaNI GCATC 2 cut(s) 223, 354
SmiMI CAYNNNNRTG 1 cut(s) 362
Sse9I AATT 3 cut(s) 117, 244, 335
SsiI CCGC 2 cut(s) 4, 11
SspMI CTAG 1 cut(s) 150
StyD4I CCNGG 1 cut(s) 310
TaaI ACNGT 1 cut(s) 376
TasI AATT 3 cut(s) 117, 244, 335
TatI WGTACW 1 cut(s) 273
TfiI GAWTC 2 cut(s) 173, 227
TscAI CASTG 2 cut(s) 286, 381
TseFI GTSAC 1 cut(s) 370
TseI GCWGC 1 cut(s) 146
Tsp45I GTSAC 1 cut(s) 370
TspDTI ATGAA 4 cut(s) 176, 316, 329, 374
TspRI CASTG 2 cut(s) 286, 381
XapI RAATTY 2 cut(s) 117, 335
XceI RCATGY 1 cut(s) 76
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.