Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007529

Physical Location & Seq

Genomic Coordinates Reverse (-)

32260428 .. 32260772

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0224600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGAAGGGCATTGTGATCTCGATGTTTCTTGTGCTAGGCACGGTTCACCTAATGGTGCATCAAGGGGAGGCAGTTGAGTGCACCCAAGTGAATCGGTTGTTGGCTCCTTGCATTCCCTACTTGACTGGCAAGGCTACTGAACCCACAGAGGAGTGCTGCCGTGGGGTGAGTGACATCAAGACACTCACCCCGACCACCGAGGACAGGCAGGAGGCCTGTGGATGTGTTAAGACAGCAGCTGCTCACATCCCCAATGTTGATCCAGCTGCAGCTGCTGCTCTCCCAACCGAGTGTAAAGTAGACATTGGAATTCCGATCTCAAAGAACACCAACTGTCAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

114

Amino Acids

12.09

Weight (kDa)

5.3

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	18 - 101	4.4e-09	Probable lipid transfer
Tryp_alpha_amyl	PF00234	27 - 112	4.3e-14	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007529)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12380 FvH4_7g12960 FvH4_7g12970
rosa_chinensis	RchiOBHm_Chr1g0352111
rosa_laevigata	RLG00000028360
rosa_multiflora	Rmu_sc0005345.1_g000001
rosa_roxburghii	Rroxscaffold_4G00303200 Rroxscaffold_4G00303210 Rroxscaffold_4G00303220 Rroxscaffold_4G00303230 Rroxscaffold_4G00303980
rosa_rugosa	Rorug01G0224200 Rorug01G0224400 Rorug01G0224600
rosa_samantha	Rh1BG209000 Rh1BG209100 Rh1BG209700 Rh1CG223000 Rh1CG223300 Rh1DG235400 Rh1DG235500 Rh1DG236400 Rh1DG236500
rosa_wichuraiana	Rw1G020730 Rw1G020740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	300
AclWI	GGATC	1 cut(s)	254
AcsI	RAATTY	1 cut(s)	309
AfiI	CCNNNNNNNGG	1 cut(s)	204
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AleI	CACNNNNGTG	1 cut(s)	86
AluBI	AGCT	3 cut(s)	239, 266, 272
AluI	AGCT	3 cut(s)	239, 266, 272
Alw21I	GWGCWC	1 cut(s)	83
Alw44I	GTGCAC	1 cut(s)	79
AlwI	GGATC	1 cut(s)	254
AlwNI	CAGNNNCTG	2 cut(s)	239, 275
AoxI	GGCC	1 cut(s)	213
ApaLI	GTGCAC	1 cut(s)	79
ApeKI	GCWGC	7 cut(s)	156, 236, 239, 266, 269, 272, 275
ApoI	RAATTY	1 cut(s)	309
AsuHPI	GGTGA	3 cut(s)	38, 178, 178
BaeGI	GKGCMC	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	83
BbvI	GCAGC	7 cut(s)	143, 226, 248, 253, 259, 262, 281
BceAI	ACGGC	1 cut(s)	144
BfaI	CTAG	1 cut(s)	35
BfmI	CTRYAG	1 cut(s)	267
BisI	GCNGC	7 cut(s)	157, 237, 240, 267, 270, 273, 276
BlsI	GCNGC	7 cut(s)	158, 238, 241, 268, 271, 274, 277
BmiI	GGNNCC	1 cut(s)	105
BmsI	GCATC	1 cut(s)	67
BsaJI	CCNNGG	2 cut(s)	160, 198
Bsc4I	CCNNNNNNNGG	1 cut(s)	204
Bse1I	ACTGG	1 cut(s)	130
BseDI	CCNNGG	2 cut(s)	160, 198
BseGI	GGATG	2 cut(s)	227, 246
BseLI	CCNNNNNNNGG	1 cut(s)	204
BseNI	ACTGG	1 cut(s)	130
BseRI	GAGGAG	1 cut(s)	164
BseSI	GKGCMC	1 cut(s)	83
BseXI	GCAGC	7 cut(s)	143, 226, 248, 253, 259, 262, 281
BshFI	GGCC	1 cut(s)	215
BsiHKAI	GWGCWC	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	204
BsmI	GAATGC	1 cut(s)	111
BsnI	GGCC	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp143I	GATC	3 cut(s)	15, 259, 315
BspANI	GGCC	1 cut(s)	215
BspLI	GGNNCC	1 cut(s)	105
BspMAI	CTGCAG	1 cut(s)	271
BspPI	GGATC	1 cut(s)	254
BsrI	ACTGG	1 cut(s)	130
BssECI	CCNNGG	2 cut(s)	160, 198
BssMI	GATC	3 cut(s)	15, 259, 315
Bst4CI	ACNGT	2 cut(s)	43, 335
BstAPI	GCANNNNNTGC	1 cut(s)	275
BstDSI	CCRYGG	1 cut(s)	160
BstF5I	GGATG	2 cut(s)	227, 246
BstKTI	GATC	3 cut(s)	18, 262, 318
BstMBI	GATC	3 cut(s)	15, 259, 315
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 275
BstSFI	CTRYAG	1 cut(s)	267
BstSLI	GKGCMC	1 cut(s)	83
BstV1I	GCAGC	7 cut(s)	143, 226, 248, 253, 259, 262, 281
BsuRI	GGCC	1 cut(s)	215
BtgI	CCRYGG	1 cut(s)	160
BtsCI	GGATG	2 cut(s)	227, 246
CaiI	CAGNNNCTG	2 cut(s)	239, 275
CviJI	RGCY	6 cut(s)	104, 134, 215, 239, 266, 272
CviKI_1	RGCY	6 cut(s)	104, 134, 215, 239, 266, 272
DpnI	GATC	3 cut(s)	17, 261, 317
DpnII	GATC	3 cut(s)	15, 259, 315
Eco147I	AGGCCT	1 cut(s)	215
EcoRI	GAATTC	1 cut(s)	309
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	7 cut(s)	157, 237, 240, 267, 270, 273, 276
FokI	GGATG	2 cut(s)	233, 234
Fsp4HI	GCNGC	7 cut(s)	157, 237, 240, 267, 270, 273, 276
FspBI	CTAG	1 cut(s)	35
GluI	GCNGC	7 cut(s)	157, 237, 240, 267, 270, 273, 276
HaeIII	GGCC	1 cut(s)	215
HinfI	GANTC	1 cut(s)	91
HphI	GGTGA	3 cut(s)	38, 178, 178
Hpy166II	GTNNAC	3 cut(s)	46, 81, 301
Hpy188I	TCNGA	1 cut(s)	315
Hpy188III	TCNNGA	3 cut(s)	19, 178, 338
Hpy8I	GTNNAC	3 cut(s)	46, 81, 301
HpyCH4III	ACNGT	2 cut(s)	43, 335
HpyCH4V	TGCA	4 cut(s)	58, 81, 111, 269
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 275
Kzo9I	GATC	3 cut(s)	15, 259, 315
LmnI	GCTCC	1 cut(s)	109
LpnPI	CCDG	6 cut(s)	111, 190, 194, 229, 276, 323
Lsp1109I	GCAGC	7 cut(s)	143, 226, 248, 253, 259, 262, 281
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	1 cut(s)	35
MaeIII	GTNAC	1 cut(s)	170
MalI	GATC	3 cut(s)	17, 261, 317
MboI	GATC	3 cut(s)	15, 259, 315
MhlI	GDGCHC	1 cut(s)	83
MluCI	AATT	1 cut(s)	309
MnlI	CCTC	4 cut(s)	61, 142, 193, 205
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	1 cut(s)	86
MspA1I	CMGCKG	3 cut(s)	239, 266, 272
Mva1269I	GAATGC	1 cut(s)	111
MwoI	GCNNNNNNNGC	2 cut(s)	272, 275
NdeII	GATC	3 cut(s)	15, 259, 315
NlaIV	GGNNCC	1 cut(s)	105
NmuCI	GTSAC	1 cut(s)	170
OliI	CACNNNNGTG	1 cut(s)	86
PceI	AGGCCT	1 cut(s)	215
PctI	GAATGC	1 cut(s)	111
PfeI	GAWTC	1 cut(s)	91
PkrI	GCNGC	7 cut(s)	158, 238, 241, 268, 271, 274, 277
PspN4I	GGNNCC	1 cut(s)	105
PstI	CTGCAG	1 cut(s)	271
PstNI	CAGNNNCTG	2 cut(s)	239, 275
PvuII	CAGCTG	3 cut(s)	239, 266, 272
RseI	CAYNNNNRTG	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	7 cut(s)	157, 237, 240, 267, 270, 273, 276
Sau3AI	GATC	3 cut(s)	15, 259, 315
SduI	GDGCHC	1 cut(s)	83
SetI	ASST	4 cut(s)	51, 241, 268, 274
SfaNI	GCATC	1 cut(s)	67
SfcI	CTRYAG	1 cut(s)	267
SmiMI	CAYNNNNRTG	1 cut(s)	86
Sse9I	AATT	1 cut(s)	309
SseBI	AGGCCT	1 cut(s)	215
SspMI	CTAG	1 cut(s)	35
StuI	AGGCCT	1 cut(s)	215
TaaI	ACNGT	2 cut(s)	43, 335
TaqI	TCGA	1 cut(s)	20
TasI	AATT	1 cut(s)	309
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TseFI	GTSAC	1 cut(s)	170
TseI	GCWGC	7 cut(s)	156, 236, 239, 266, 269, 272, 275
Tsp45I	GTSAC	1 cut(s)	170
TspDTI	ATGAA	1 cut(s)	17
VneI	GTGCAC	1 cut(s)	79
XapI	RAATTY	1 cut(s)	309
XmiI	GTMKAC	1 cut(s)	300
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.