RLG00000028360

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0007529
Physical Location & Seq
Forward (+)
21840851 .. 21841703
853 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028360

Sequence Viewer

Length: 363 bp
ATGGCAGTGGCACAATACTCGGCTCTTGCTCTGATTGCGTTTCTGGTTTCTCCGATCATGGTGATGGTGATGGCAAATTCATACGAAGTTGACTGGGCAACTGGAGTTGATTTCACTGATTTTGCTACTAAGAACACTTTCTATGCTGGAGATGTATTGAATTTTCATTATGATAGAGTTCATAACAATGTGGTTATAGCAACTGATGGTGGTGAATTTGATCAATGCGAGATGGAACCGAACTTGGGTTATTATCAAAGTGGCAATGAAGCATTTACCTTGGGTGAAGCTGGATACTATTATTTTATGTGTGGGTATCACTGCAAATCTGATGGCATGAAAATTTCAGTGTTTGTGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

121

Amino Acids

13.4

Weight (kDa)

4.24

Isoelectric Point (pI)

25.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 32 - 110 9.5e-14 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 4 cut(s) 76, 160, 215, 342
AfiI CCNNNNNNNGG 1 cut(s) 245
AgsI TTSAA 1 cut(s) 160
AluBI AGCT 1 cut(s) 290
AluI AGCT 1 cut(s) 290
ApoI RAATTY 4 cut(s) 76, 160, 215, 342
Asp700I GAANNNNTTC 1 cut(s) 137
AsuHPI GGTGA 4 cut(s) 73, 79, 224, 296
BccI CCATC 5 cut(s) 58, 64, 200, 226, 326
BcgI CGANNNNNNTGC 1 cut(s) 34
BciVI GTATCC 1 cut(s) 287
BclI TGATCA 1 cut(s) 220
BfaI CTAG 1 cut(s) 361
BfuI GTATCC 1 cut(s) 287
BmiI GGNNCC 1 cut(s) 237
BmrI ACTGGG 1 cut(s) 103
BmuI ACTGGG 1 cut(s) 103
BpmI CTGGAG 2 cut(s) 123, 168
BsaJI CCNNGG 1 cut(s) 279
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse1I ACTGG 2 cut(s) 98, 106
Bse3DI GCAATG 1 cut(s) 271
BseDI CCNNGG 1 cut(s) 279
BseLI CCNNNNNNNGG 1 cut(s) 245
BseMI GCAATG 1 cut(s) 271
BseNI ACTGG 2 cut(s) 98, 106
BslI CCNNNNNNNGG 1 cut(s) 245
Bsp143I GATC 2 cut(s) 54, 220
BspLI GGNNCC 1 cut(s) 237
BsrDI GCAATG 1 cut(s) 271
BsrI ACTGG 2 cut(s) 98, 106
BssECI CCNNGG 1 cut(s) 279
BssMI GATC 2 cut(s) 54, 220
BssT1I CCWWGG 1 cut(s) 279
BstDEI CTNAG 1 cut(s) 129
BstKTI GATC 2 cut(s) 57, 223
BstMBI GATC 2 cut(s) 54, 220
BstMWI GCNNNNNNNGC 1 cut(s) 35
BsuI GTATCC 1 cut(s) 287
BtsI GCAGTG 2 cut(s) 12, 319
BtsIMutI CAGTG 4 cut(s) 12, 114, 319, 354
CviAII CATG 2 cut(s) 58, 337
CviJI RGCY 2 cut(s) 23, 290
CviKI_1 RGCY 2 cut(s) 23, 290
DdeI CTNAG 1 cut(s) 129
DpnI GATC 2 cut(s) 56, 222
DpnII GATC 2 cut(s) 54, 220
Eco130I CCWWGG 1 cut(s) 279
EcoT14I CCWWGG 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 2 cut(s) 61, 340
FaiI YATR 8 cut(s) 59, 82, 144, 171, 183, 197, 308, 338
FatI CATG 2 cut(s) 57, 336
FbaI TGATCA 1 cut(s) 220
FspBI CTAG 1 cut(s) 361
GsuI CTGGAG 2 cut(s) 123, 168
Hin1II CATG 2 cut(s) 61, 340
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HphI GGTGA 4 cut(s) 73, 79, 224, 296
Hpy166II GTNNAC 2 cut(s) 91, 358
Hpy188I TCNGA 3 cut(s) 33, 54, 331
Hpy8I GTNNAC 2 cut(s) 91, 358
HpyCH4V TGCA 1 cut(s) 324
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 1 cut(s) 129
Hsp92II CATG 2 cut(s) 61, 340
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 2 cut(s) 54, 220
LpnPI CCDG 5 cut(s) 29, 79, 87, 132, 276
MaeI CTAG 1 cut(s) 361
MalI GATC 2 cut(s) 56, 222
MboI GATC 2 cut(s) 54, 220
MluCI AATT 4 cut(s) 76, 160, 215, 342
MroXI GAANNNNTTC 1 cut(s) 137
MslI CAYNNNNRTG 2 cut(s) 62, 186
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeII GATC 2 cut(s) 54, 220
NlaIII CATG 2 cut(s) 61, 340
NlaIV GGNNCC 1 cut(s) 237
PdmI GAANNNNTTC 1 cut(s) 137
PspN4I GGNNCC 1 cut(s) 237
RseI CAYNNNNRTG 2 cut(s) 62, 186
Sau3AI GATC 2 cut(s) 54, 220
SetI ASST 2 cut(s) 281, 292
SmiMI CAYNNNNRTG 2 cut(s) 62, 186
Sse9I AATT 4 cut(s) 76, 160, 215, 342
SspMI CTAG 1 cut(s) 361
StyI CCWWGG 1 cut(s) 279
TasI AATT 4 cut(s) 76, 160, 215, 342
TscAI CASTG 4 cut(s) 12, 121, 326, 354
TspDTI ATGAA 5 cut(s) 69, 155, 170, 282, 353
TspRI CASTG 4 cut(s) 12, 121, 326, 354
XapI RAATTY 4 cut(s) 76, 160, 215, 342
XmnI GAANNNNTTC 1 cut(s) 137
XspI CTAG 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.