Rh1CG223000

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0007529
Physical Location & Seq
Reverse (-)
47324789 .. 47336987
12199 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG223000.1

Sequence Viewer

Length: 366 bp
ATGGCAGTGGCAAAATACTCGGCTCTTGCTCTGATTGCGTTTCTGGTTTCTCCGATCATGGTGATGGTGATGGCAAATCAGTCATACGAAGTTGACTGGTCAATTGGAGTTGATTTCACTGATTTTGCTACTCAAAATACTTTCTTTGCTGGAGATGTATTAAATTTTCATTATGATAGTGTTCATAACAATGTGGTTATAGCAACCGATGGTAATGAATTTGATCAATGCGAGATGGAACCGAACTTGGGTTATTATCAAAGTGGCAATGAAGCATTTACCTTGGGTGAAGCTGGATACTATTATTTCATGTGCGGGTATCACTGCAAATCTGATGGCATGAAAATGTCAGTGTTTGTGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

121

Amino Acids

13.57

Weight (kDa)

4.23

Isoelectric Point (pI)

33.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 111 2.3e-13 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 315
AcsI RAATTY 2 cut(s) 163, 218
AfiI CCNNNNNNNGG 1 cut(s) 248
AluBI AGCT 1 cut(s) 293
AluI AGCT 1 cut(s) 293
Alw21I GWGCWC 1 cut(s) 363
Alw44I GTGCAC 1 cut(s) 359
ApaLI GTGCAC 1 cut(s) 359
ApoI RAATTY 2 cut(s) 163, 218
AsuHPI GGTGA 3 cut(s) 73, 79, 299
BaeGI GKGCMC 1 cut(s) 363
Bbv12I GWGCWC 1 cut(s) 363
BccI CCATC 5 cut(s) 58, 64, 203, 229, 329
BcgI CGANNNNNNTGC 1 cut(s) 34
BciVI GTATCC 1 cut(s) 290
BclI TGATCA 1 cut(s) 223
BfaI CTAG 1 cut(s) 364
BfuI GTATCC 1 cut(s) 290
BmiI GGNNCC 1 cut(s) 240
BpmI CTGGAG 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 282
Bsc4I CCNNNNNNNGG 1 cut(s) 248
Bse1I ACTGG 1 cut(s) 101
Bse3DI GCAATG 1 cut(s) 274
BseDI CCNNGG 1 cut(s) 282
BseLI CCNNNNNNNGG 1 cut(s) 248
BseMI GCAATG 1 cut(s) 274
BseNI ACTGG 1 cut(s) 101
BseSI GKGCMC 1 cut(s) 363
BsiHKAI GWGCWC 1 cut(s) 363
BslI CCNNNNNNNGG 1 cut(s) 248
Bsp1286I GDGCHC 1 cut(s) 363
Bsp143I GATC 2 cut(s) 54, 223
BspACI CCGC 1 cut(s) 315
BspLI GGNNCC 1 cut(s) 240
BsrDI GCAATG 1 cut(s) 274
BsrI ACTGG 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 282
BssMI GATC 2 cut(s) 54, 223
BssT1I CCWWGG 1 cut(s) 282
BstKTI GATC 2 cut(s) 57, 226
BstMBI GATC 2 cut(s) 54, 223
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstSLI GKGCMC 1 cut(s) 363
BsuI GTATCC 1 cut(s) 290
BtsI GCAGTG 2 cut(s) 12, 322
BtsIMutI CAGTG 4 cut(s) 12, 117, 322, 357
CviAII CATG 3 cut(s) 58, 310, 340
CviJI RGCY 2 cut(s) 23, 293
CviKI_1 RGCY 2 cut(s) 23, 293
DpnI GATC 2 cut(s) 56, 225
DpnII GATC 2 cut(s) 54, 223
Eco130I CCWWGG 1 cut(s) 282
EcoT14I CCWWGG 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 3 cut(s) 61, 313, 343
FaiI YATR 7 cut(s) 59, 85, 174, 186, 200, 311, 341
FatI CATG 3 cut(s) 57, 309, 339
FauI CCCGC 1 cut(s) 308
FbaI TGATCA 1 cut(s) 223
FspBI CTAG 1 cut(s) 364
GsuI CTGGAG 1 cut(s) 171
Hin1II CATG 3 cut(s) 61, 313, 343
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HphI GGTGA 3 cut(s) 73, 79, 299
Hpy166II GTNNAC 2 cut(s) 94, 361
Hpy188I TCNGA 3 cut(s) 33, 54, 334
Hpy8I GTNNAC 2 cut(s) 94, 361
HpyCH4V TGCA 2 cut(s) 327, 361
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
Hsp92II CATG 3 cut(s) 61, 313, 343
Ksp22I TGATCA 1 cut(s) 223
Kzo9I GATC 2 cut(s) 54, 223
LpnPI CCDG 4 cut(s) 29, 82, 135, 279
MaeI CTAG 1 cut(s) 364
MalI GATC 2 cut(s) 56, 225
MboI GATC 2 cut(s) 54, 223
MfeI CAATTG 1 cut(s) 102
MhlI GDGCHC 1 cut(s) 363
MluCI AATT 3 cut(s) 102, 163, 218
MseI TTAA 1 cut(s) 161
MslI CAYNNNNRTG 3 cut(s) 62, 189, 344
MunI CAATTG 1 cut(s) 102
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeII GATC 2 cut(s) 54, 223
NlaIII CATG 3 cut(s) 61, 313, 343
NlaIV GGNNCC 1 cut(s) 240
PspN4I GGNNCC 1 cut(s) 240
RseI CAYNNNNRTG 3 cut(s) 62, 189, 344
SaqAI TTAA 1 cut(s) 161
Sau3AI GATC 2 cut(s) 54, 223
SduI GDGCHC 1 cut(s) 363
SetI ASST 2 cut(s) 284, 295
SmiMI CAYNNNNRTG 3 cut(s) 62, 189, 344
Sse9I AATT 3 cut(s) 102, 163, 218
SsiI CCGC 1 cut(s) 315
SspMI CTAG 1 cut(s) 364
StyI CCWWGG 1 cut(s) 282
TasI AATT 3 cut(s) 102, 163, 218
Tru1I TTAA 1 cut(s) 161
Tru9I TTAA 1 cut(s) 161
TscAI CASTG 4 cut(s) 12, 124, 329, 357
TspDTI ATGAA 6 cut(s) 158, 173, 231, 285, 298, 356
TspRI CASTG 4 cut(s) 12, 124, 329, 357
VneI GTGCAC 1 cut(s) 359
XapI RAATTY 2 cut(s) 163, 218
XspI CTAG 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.