Rh1CG223300

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0007529
Physical Location & Seq
Reverse (-)
47364933 .. 47365699
767 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG223300.1

Sequence Viewer

Length: 312 bp
ATGGTGATGGTGATGGCAAATTCATACGAAGTTGACTGGTCAACTGAAATTGCTTCCAGTGGTTTTGCTCATGAAAACACTTTCTTTGCTGGAGATGTACTCAATTTTCATTACGATAAGAATTATCACAATGTGGTTGTAGCAACAGATAGTGCTGCATTTGAACAATGCAACATGGAACCGAACTTAGGTTTCTATACAAATGGCAATGAAGCATTAACCTTGGTTGAACCTGGATACTATTATTTCATGTGTGAGTATAACTGTGAATCTGATGGCATGAAGATGTCAATGTATGTGTACAATATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

103

Amino Acids

11.82

Weight (kDa)

4.07

Isoelectric Point (pI)

39.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 13 - 88 1.4e-15 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 19
AdeI CACNNNGTG 1 cut(s) 133
AfaI GTAC 2 cut(s) 99, 302
AfiI CCNNNNNNNGG 1 cut(s) 188
AgsI TTSAA 2 cut(s) 164, 230
AjnI CCWGG 1 cut(s) 232
ApeKI GCWGC 1 cut(s) 155
ApoI RAATTY 1 cut(s) 19
AsuHPI GGTGA 2 cut(s) 16, 22
BbvI GCAGC 1 cut(s) 142
BccI CCATC 2 cut(s) 7, 269
BciT130I CCWGG 1 cut(s) 234
BciVI GTATCC 1 cut(s) 230
BfuI GTATCC 1 cut(s) 230
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
Bme1390I CCNGG 1 cut(s) 234
BmiI GGNNCC 1 cut(s) 180
BmrFI CCNGG 1 cut(s) 234
BplI GAGNNNNNCTC 2 cut(s) 84, 116
BpmI CTGGAG 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 222
Bsc4I CCNNNNNNNGG 1 cut(s) 188
Bse1I ACTGG 2 cut(s) 41, 57
Bse3DI GCAATG 1 cut(s) 214
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 222
BseLI CCNNNNNNNGG 1 cut(s) 188
BseMI GCAATG 1 cut(s) 214
BseNI ACTGG 2 cut(s) 41, 57
BseXI GCAGC 1 cut(s) 142
BslI CCNNNNNNNGG 1 cut(s) 188
Bsp1407I TGTACA 1 cut(s) 300
BspHI TCATGA 1 cut(s) 70
BspLI GGNNCC 1 cut(s) 180
BsrDI GCAATG 1 cut(s) 214
BsrGI TGTACA 1 cut(s) 300
BsrI ACTGG 2 cut(s) 41, 57
BssECI CCNNGG 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 222
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 1 cut(s) 266
BstAUI TGTACA 1 cut(s) 300
BstDEI CTNAG 1 cut(s) 187
BstNI CCWGG 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 232
BstV1I GCAGC 1 cut(s) 142
BsuI GTATCC 1 cut(s) 230
BtsIMutI CAGTG 1 cut(s) 64
CciI TCATGA 1 cut(s) 70
Csp6I GTAC 2 cut(s) 98, 301
CviAII CATG 4 cut(s) 71, 175, 250, 280
CviQI GTAC 2 cut(s) 98, 301
DdeI CTNAG 1 cut(s) 187
DraIII CACNNNGTG 1 cut(s) 133
Eco130I CCWWGG 1 cut(s) 222
EcoRII CCWGG 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 4 cut(s) 74, 178, 253, 283
FaiI YATR 9 cut(s) 25, 72, 176, 198, 251, 261, 281, 297, 308
FatI CATG 4 cut(s) 70, 174, 249, 279
Fnu4HI GCNGC 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 156
GluI GCNGC 1 cut(s) 156
GsuI CTGGAG 1 cut(s) 111
Hin1II CATG 4 cut(s) 74, 178, 253, 283
HincII GTYRAC 2 cut(s) 34, 42
HindII GTYRAC 2 cut(s) 34, 42
HinfI GANTC 1 cut(s) 269
HphI GGTGA 2 cut(s) 16, 22
Hpy166II GTNNAC 3 cut(s) 34, 42, 301
Hpy188I TCNGA 1 cut(s) 274
Hpy188III TCNNGA 1 cut(s) 71
Hpy8I GTNNAC 3 cut(s) 34, 42, 301
HpyCH4III ACNGT 1 cut(s) 266
HpyCH4V TGCA 2 cut(s) 158, 171
HpyF3I CTNAG 1 cut(s) 187
Hsp92II CATG 4 cut(s) 74, 178, 253, 283
LpnPI CCDG 5 cut(s) 22, 70, 75, 219, 246
Lsp1109I GCAGC 1 cut(s) 142
MboII GAAGA 1 cut(s) 295
MluCI AATT 4 cut(s) 19, 48, 103, 121
MseI TTAA 1 cut(s) 218
MslI CAYNNNNRTG 1 cut(s) 284
MspR9I CCNGG 1 cut(s) 234
MvaI CCWGG 1 cut(s) 234
NlaIII CATG 4 cut(s) 74, 178, 253, 283
NlaIV GGNNCC 1 cut(s) 180
PagI TCATGA 1 cut(s) 70
PfeI GAWTC 1 cut(s) 269
PkrI GCNGC 1 cut(s) 157
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PspN4I GGNNCC 1 cut(s) 180
RsaI GTAC 2 cut(s) 99, 302
RsaNI GTAC 2 cut(s) 98, 301
RseI CAYNNNNRTG 1 cut(s) 284
SaqAI TTAA 1 cut(s) 218
SatI GCNGC 1 cut(s) 156
ScrFI CCNGG 1 cut(s) 234
SetI ASST 3 cut(s) 193, 224, 235
SmiMI CAYNNNNRTG 1 cut(s) 284
Sse9I AATT 4 cut(s) 19, 48, 103, 121
StyD4I CCNGG 1 cut(s) 232
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 1 cut(s) 266
TasI AATT 4 cut(s) 19, 48, 103, 121
TatI WGTACW 2 cut(s) 97, 300
TfiI GAWTC 1 cut(s) 269
Tru1I TTAA 1 cut(s) 218
Tru9I TTAA 1 cut(s) 218
TscAI CASTG 1 cut(s) 64
TseI GCWGC 1 cut(s) 155
TspDTI ATGAA 6 cut(s) 12, 87, 98, 225, 238, 296
TspRI CASTG 1 cut(s) 64
XapI RAATTY 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.