Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005345.1

Orthogroup ID

OG0007529

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 5205

Gene Structure 5205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005345.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 923 bp

agcaaggatgtgctgtcgttggacgagaagcatcggcttgcggcggaagagagcttgccagcagaggtgacggcgccggtgaggggatggaggaggttaatgagggagagacagcagccacggatctcaagctcgaggtctggagagggaggttgggtcagagagcgaggccgggaactcagggtcagagagcgaggtcagggactctgggtcagatcggaggtggctccagtcagcttaggtcggagaatgaagtcggggacttggagcacgtcaggttggagaaggatgtcgggaactcaaggcaagtcagcttggagaacgatgaggtcggcaaggtaccttcctttcttgtttcgactcaacttgcttgtaccgacccaaattcggagaacgagcgtgaagaaattagccacaaagctttcactcactccaatcaggaaaagtgggtgggaaatcttcagctgaatttttcagcaccaacatggcatgatgtagatatcttttgcaaaaatgagaactaccattcccgttggtcactcttggatagttcacatttgttagcgtggggaatggcacaatactcggctcttgctctgattgcgtttctggtttctccgatcatggtgatggcaaattcatacgaagttgactgggcaactggggttgatttcgctgagtttgctactcagaacactttttttgctggagatgtattgaattttcattatgattgtgttcataacaatgtggttatagcaaccgatggtgatgaatttgatcaatgcgagatggaaccgaacttgggttattatcaaagtggcaatgaagcatttaccttgggtgaagctggatactattatttcatgtgcgggtatcactgcaaatctgatggcatgaaaatgtcagtgtttgtgcactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

306

Amino Acids

33.73

Weight (kDa)

4.72

Isoelectric Point (pI)

34.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007529)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12380 FvH4_7g12960 FvH4_7g12970
rosa_chinensis	RchiOBHm_Chr1g0352111
rosa_laevigata	RLG00000028360
rosa_multiflora	Rmu_sc0005345.1_g000001
rosa_roxburghii	Rroxscaffold_4G00303200 Rroxscaffold_4G00303210 Rroxscaffold_4G00303220 Rroxscaffold_4G00303230 Rroxscaffold_4G00303980
rosa_rugosa	Rorug01G0224200 Rorug01G0224400 Rorug01G0224600
rosa_samantha	Rh1BG209000 Rh1BG209100 Rh1BG209700 Rh1CG223000 Rh1CG223300 Rh1DG235400 Rh1DG235500 Rh1DG236400 Rh1DG236500
rosa_wichuraiana	Rw1G020730 Rw1G020740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	339
AccB1I	GGYRCC	2 cut(s)	73, 339
AciI	CCGC	3 cut(s)	41, 44, 872
AclWI	GGATC	1 cut(s)	131
AcsI	RAATTY	5 cut(s)	384, 468, 636, 720, 775
AcuI	CTGAAG	1 cut(s)	445
AcyI	GRCGYC	1 cut(s)	74
AfaI	GTAC	2 cut(s)	341, 375
AfiI	CCNNNNNNNGG	3 cut(s)	83, 387, 805
AgsI	TTSAA	1 cut(s)	720
AhdI	GACNNNNNGTC	1 cut(s)	209
AjiI	CACGTC	1 cut(s)	273
AloI	GAACNNNNNNTCC	2 cut(s)	511, 543
AluBI	AGCT	7 cut(s)	54, 132, 237, 314, 421, 465, 850
AluI	AGCT	7 cut(s)	54, 132, 237, 314, 421, 465, 850
Alw21I	GWGCWC	2 cut(s)	272, 920
Alw26I	GTCTC	1 cut(s)	103
Alw44I	GTGCAC	1 cut(s)	916
AlwI	GGATC	1 cut(s)	131
Ama87I	CYCGRG	1 cut(s)	133
AoxI	GGCC	1 cut(s)	169
ApaLI	GTGCAC	1 cut(s)	916
ApeKI	GCWGC	1 cut(s)	115
ApoI	RAATTY	5 cut(s)	384, 468, 636, 720, 775
Asp718I	GGTACC	1 cut(s)	339
AspLEI	GCGC	1 cut(s)	76
AsuC2I	CCSGG	1 cut(s)	173
AsuHPI	GGTGA	5 cut(s)	79, 91, 639, 781, 856
AvaI	CYCGRG	1 cut(s)	133
BaeGI	GKGCMC	1 cut(s)	920
BanI	GGYRCC	2 cut(s)	73, 339
Bbv12I	GWGCWC	2 cut(s)	272, 920
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	5 cut(s)	81, 624, 760, 786, 886
BceAI	ACGGC	1 cut(s)	87
BcgI	CGANNNNNNTGC	2 cut(s)	566, 600
BciVI	GTATCC	1 cut(s)	847
BclI	TGATCA	1 cut(s)	780
BcnI	CCSGG	1 cut(s)	173
BcoDI	GTCTC	1 cut(s)	103
BfaI	CTAG	1 cut(s)	921
BfoI	RGCGCY	1 cut(s)	77
BfuI	GTATCC	1 cut(s)	847
BisI	GCNGC	2 cut(s)	42, 116
BlsI	GCNGC	2 cut(s)	43, 117
Bme1390I	CCNGG	1 cut(s)	173
BmeRI	GACNNNNNGTC	1 cut(s)	209
BmeT110I	CYCGRG	1 cut(s)	133
BmgBI	CACGTC	1 cut(s)	273
BmiI	GGNNCC	4 cut(s)	75, 228, 341, 797
BmrFI	CCNGG	1 cut(s)	173
BmrI	ACTGGG	2 cut(s)	663, 671
BmsI	GCATC	1 cut(s)	40
BmuI	ACTGGG	2 cut(s)	663, 671
BpmI	CTGGAG	3 cut(s)	162, 213, 728
Bpu10I	CCTNAGC	1 cut(s)	238
BpuEI	CTTGAG	2 cut(s)	112, 285
BpuMI	CCSGG	1 cut(s)	173
BsaHI	GRCGYC	1 cut(s)	74
BsaJI	CCNNGG	2 cut(s)	119, 839
BsaXI	ACNNNNNCTCC	2 cut(s)	141, 171
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 387, 805
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	3 cut(s)	230, 658, 666
Bse3DI	GCAATG	1 cut(s)	831
BseDI	CCNNGG	2 cut(s)	119, 839
BseGI	GGATG	3 cut(s)	13, 92, 294
BseLI	CCNNNNNNNGG	3 cut(s)	83, 387, 805
BseMI	GCAATG	1 cut(s)	831
BseMII	CTCAG	3 cut(s)	193, 668, 703
BseNI	ACTGG	3 cut(s)	230, 658, 666
BseRI	GAGGAG	1 cut(s)	106
BseSI	GKGCMC	1 cut(s)	920
BseXI	GCAGC	1 cut(s)	127
BshFI	GGCC	1 cut(s)	171
BshNI	GGYRCC	2 cut(s)	73, 339
BsiHKAI	GWGCWC	2 cut(s)	272, 920
BsiHKCI	CYCGRG	1 cut(s)	133
BsiSI	CCGG	2 cut(s)	77, 172
BslFI	GGGAC	2 cut(s)	216, 274
BslI	CCNNNNNNNGG	3 cut(s)	83, 387, 805
BsmAI	GTCTC	1 cut(s)	103
BsmFI	GGGAC	2 cut(s)	216, 274
BsnI	GGCC	1 cut(s)	171
BsoBI	CYCGRG	1 cut(s)	133
Bsp1286I	GDGCHC	2 cut(s)	272, 920
Bsp143I	GATC	4 cut(s)	123, 215, 620, 780
BspACI	CCGC	3 cut(s)	41, 44, 872
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	3 cut(s)	192, 669, 702
BspLI	GGNNCC	4 cut(s)	75, 228, 341, 797
BspPI	GGATC	1 cut(s)	131
BspT107I	GGYRCC	2 cut(s)	73, 339
BsrDI	GCAATG	1 cut(s)	831
BsrFI	RCCGGY	1 cut(s)	76
BsrI	ACTGG	3 cut(s)	230, 658, 666
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	2 cut(s)	119, 839
BssMI	GATC	4 cut(s)	123, 215, 620, 780
BssNI	GRCGYC	1 cut(s)	74
BssT1I	CCWWGG	1 cut(s)	839
Bst6I	CTCTTC	1 cut(s)	42
BstACI	GRCGYC	1 cut(s)	74
BstC8I	GCNNGC	3 cut(s)	39, 56, 60
BstDEI	CTNAG	4 cut(s)	179, 238, 677, 689
BstDSI	CCRYGG	1 cut(s)	119
BstF5I	GGATG	3 cut(s)	13, 92, 294
BstH2I	RGCGCY	1 cut(s)	77
BstHHI	GCGC	1 cut(s)	76
BstKTI	GATC	4 cut(s)	126, 218, 623, 783
BstMAI	GTCTC	1 cut(s)	103
BstMBI	GATC	4 cut(s)	123, 215, 620, 780
BstMWI	GCNNNNNNNGC	2 cut(s)	601, 682
BstSCI	CCNGG	1 cut(s)	171
BstSLI	GKGCMC	1 cut(s)	920
BstV1I	GCAGC	1 cut(s)	127
BstX2I	RGATCY	1 cut(s)	123
BstYI	RGATCY	1 cut(s)	123
BsuI	GTATCC	1 cut(s)	847
BsuRI	GGCC	1 cut(s)	171
BtgI	CCRYGG	1 cut(s)	119
BtrI	CACGTC	1 cut(s)	273
BtsCI	GGATG	3 cut(s)	13, 92, 294
BtsI	GCAGTG	1 cut(s)	879
BtsIMutI	CAGTG	2 cut(s)	879, 914
Cac8I	GCNNGC	3 cut(s)	39, 56, 60
CfoI	GCGC	1 cut(s)	76
Cfr10I	RCCGGY	1 cut(s)	76
Csp6I	GTAC	2 cut(s)	340, 374
CviAII	CATG	5 cut(s)	485, 490, 624, 867, 897
CviQI	GTAC	2 cut(s)	340, 374
DdeI	CTNAG	4 cut(s)	179, 238, 677, 689
DinI	GGCGCC	1 cut(s)	75
DpnI	GATC	4 cut(s)	125, 217, 622, 782
DpnII	GATC	4 cut(s)	123, 215, 620, 780
DriI	GACNNNNNGTC	1 cut(s)	209
Eam1104I	CTCTTC	1 cut(s)	42
Eam1105I	GACNNNNNGTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	42
EciI	GGCGGA	1 cut(s)	59
Eco130I	CCWWGG	1 cut(s)	839
Eco32I	GATATC	1 cut(s)	501
Eco57I	CTGAAG	1 cut(s)	445
Eco88I	CYCGRG	1 cut(s)	133
EcoRV	GATATC	1 cut(s)	501
EcoT14I	CCWWGG	1 cut(s)	839
EgeI	GGCGCC	1 cut(s)	75
EheI	GGCGCC	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	839
FaeI	CATG	5 cut(s)	488, 493, 627, 870, 900
FaiI	YATR	9 cut(s)	486, 491, 625, 642, 731, 743, 757, 868, 898
FaqI	GGGAC	2 cut(s)	216, 274
FatI	CATG	5 cut(s)	484, 489, 623, 866, 896
FauI	CCCGC	1 cut(s)	865
FbaI	TGATCA	1 cut(s)	780
Fnu4HI	GCNGC	2 cut(s)	42, 116
FokI	GGATG	3 cut(s)	20, 99, 301
Fsp4HI	GCNGC	2 cut(s)	42, 116
FspBI	CTAG	1 cut(s)	921
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	2 cut(s)	42, 116
GsuI	CTGGAG	3 cut(s)	162, 213, 728
HaeII	RGCGCY	1 cut(s)	77
HaeIII	GGCC	1 cut(s)	171
HapII	CCGG	2 cut(s)	77, 172
HhaI	GCGC	1 cut(s)	76
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	5 cut(s)	488, 493, 627, 870, 900
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HincII	GTYRAC	1 cut(s)	651
HindII	GTYRAC	1 cut(s)	651
HindIII	AAGCTT	1 cut(s)	419
HinfI	GANTC	2 cut(s)	204, 360
HpaII	CCGG	2 cut(s)	77, 172
HphI	GGTGA	5 cut(s)	79, 91, 639, 781, 856
Hpy166II	GTNNAC	3 cut(s)	553, 651, 918
Hpy188III	TCNNGA	3 cut(s)	141, 294, 439
Hpy8I	GTNNAC	3 cut(s)	553, 651, 918
HpyAV	CCTTC	2 cut(s)	279, 353
HpyCH4IV	ACGT	1 cut(s)	272
HpyCH4V	TGCA	3 cut(s)	509, 884, 918
HpyF10VI	GCNNNNNNNGC	2 cut(s)	601, 682
HpyF3I	CTNAG	4 cut(s)	179, 238, 677, 689
HpySE526I	ACGT	1 cut(s)	272
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	5 cut(s)	488, 493, 627, 870, 900
HspAI	GCGC	1 cut(s)	74
KasI	GGCGCC	1 cut(s)	73
KpnI	GGTACC	1 cut(s)	343
Ksp22I	TGATCA	1 cut(s)	780
Kzo9I	GATC	4 cut(s)	123, 215, 620, 780
LmnI	GCTCC	2 cut(s)	232, 267
Lsp1109I	GCAGC	1 cut(s)	127
LweI	GCATC	1 cut(s)	40
MaeI	CTAG	1 cut(s)	921
MaeII	ACGT	1 cut(s)	272
MaeIII	GTNAC	2 cut(s)	67, 536
MalI	GATC	4 cut(s)	125, 217, 622, 782
MboI	GATC	4 cut(s)	123, 215, 620, 780
MboII	GAAGA	3 cut(s)	59, 415, 451
MflI	RGATCY	1 cut(s)	123
MhlI	GDGCHC	2 cut(s)	272, 920
MluCI	AATT	6 cut(s)	384, 407, 468, 636, 720, 775
Mly113I	GGCGCC	1 cut(s)	74
MlyI	GAGTC	2 cut(s)	198, 354
MmeI	TCCRAC	2 cut(s)	224, 260
MseI	TTAA	1 cut(s)	98
MslI	CAYNNNNRTG	4 cut(s)	483, 628, 746, 901
MspA1I	CMGCKG	1 cut(s)	465
MspI	CCGG	2 cut(s)	77, 172
MspR9I	CCNGG	1 cut(s)	173
MwoI	GCNNNNNNNGC	2 cut(s)	601, 682
NarI	GGCGCC	1 cut(s)	74
NciI	CCSGG	1 cut(s)	173
NdeII	GATC	4 cut(s)	123, 215, 620, 780
NlaIII	CATG	5 cut(s)	488, 493, 627, 870, 900
NlaIV	GGNNCC	4 cut(s)	75, 228, 341, 797
NmeAIII	GCCGAG	1 cut(s)	565
NmuCI	GTSAC	2 cut(s)	67, 536
PaeR7I	CTCGAG	1 cut(s)	133
PkrI	GCNGC	2 cut(s)	43, 117
PleI	GAGTC	2 cut(s)	198, 354
PluTI	GGCGCC	1 cut(s)	77
PpsI	GAGTC	2 cut(s)	198, 354
PspN4I	GGNNCC	4 cut(s)	75, 228, 341, 797
PspXI	VCTCGAGB	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	123
PvuII	CAGCTG	1 cut(s)	465
RsaI	GTAC	2 cut(s)	341, 375
RsaNI	GTAC	2 cut(s)	340, 374
RseI	CAYNNNNRTG	4 cut(s)	483, 628, 746, 901
SaqAI	TTAA	1 cut(s)	98
SatI	GCNGC	2 cut(s)	42, 116
Sau3AI	GATC	4 cut(s)	123, 215, 620, 780
SchI	GAGTC	2 cut(s)	198, 354
ScrFI	CCNGG	1 cut(s)	173
SduI	GDGCHC	2 cut(s)	272, 920
SfaNI	GCATC	1 cut(s)	40
SfoI	GGCGCC	1 cut(s)	75
Sfr274I	CTCGAG	1 cut(s)	133
SgrAI	CRCCGGYG	1 cut(s)	76
SlaI	CTCGAG	1 cut(s)	133
SmiMI	CAYNNNNRTG	4 cut(s)	483, 628, 746, 901
SmlI	CTYRAG	3 cut(s)	127, 133, 300
SmoI	CTYRAG	3 cut(s)	127, 133, 300
Sse9I	AATT	6 cut(s)	384, 407, 468, 636, 720, 775
SsiI	CCGC	3 cut(s)	41, 44, 872
SspDI	GGCGCC	1 cut(s)	73
SspMI	CTAG	1 cut(s)	921
StyD4I	CCNGG	1 cut(s)	171
StyI	CCWWGG	1 cut(s)	839
TaiI	ACGT	1 cut(s)	275
TaqI	TCGA	2 cut(s)	134, 358
TasI	AATT	6 cut(s)	384, 407, 468, 636, 720, 775
TauI	GCSGC	1 cut(s)	44
Tru1I	TTAA	1 cut(s)	98
Tru9I	TTAA	1 cut(s)	98
TscAI	CASTG	2 cut(s)	886, 914
TseFI	GTSAC	2 cut(s)	67, 536
TseI	GCWGC	1 cut(s)	115
Tsp45I	GTSAC	2 cut(s)	67, 536
TspDTI	ATGAA	8 cut(s)	266, 629, 715, 730, 788, 842, 855, 913
TspGWI	ACGGA	1 cut(s)	136
TspRI	CASTG	2 cut(s)	886, 914
VneI	GTGCAC	1 cut(s)	916
XapI	RAATTY	5 cut(s)	384, 468, 636, 720, 775
XhoI	CTCGAG	1 cut(s)	133
XspI	CTAG	1 cut(s)	921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.