Rh1BG209000

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0007529
Physical Location & Seq
Reverse (-)
32725712 .. 32726694
983 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG209000.1

Sequence Viewer

Length: 285 bp
ATGGCAGTGGCACGATACTCGGCTCTTCCTCTGATTGCATTTCTCGTTTCTCCGATCATGGTGATGGCAACAACATACAACATTATCTGGGCACTTGGAATTGATTACACTGATTTTGTTTCTCAAAACACTTTCTATGCTGGAGATGTGATAAATTTTCATTACGATGTCGCTCGGGACAATGTGGTTATAGCAACAGATGGTGATGCATTTGATCAATGCAAGATGGATCCGAGCTTGGGTCATTATCAAAGTGGCAATGAAGCATTAAACATAGGAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

94

Amino Acids

10.33

Weight (kDa)

4.12

Isoelectric Point (pI)

51.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 30 - 90 5e-08 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 224, 237
AcsI RAATTY 1 cut(s) 154
AfiI CCNNNNNNNGG 1 cut(s) 239
AluBI AGCT 1 cut(s) 237
AluI AGCT 1 cut(s) 237
AlwI GGATC 2 cut(s) 224, 237
Ama87I CYCGRG 1 cut(s) 174
ApoI RAATTY 1 cut(s) 154
AsuHPI GGTGA 2 cut(s) 73, 215
AvaI CYCGRG 1 cut(s) 174
BaeGI GKGCMC 1 cut(s) 94
BamHI GGATCC 1 cut(s) 229
BccI CCATC 3 cut(s) 58, 194, 220
BcgI CGANNNNNNTGC 1 cut(s) 34
BclI TGATCA 1 cut(s) 214
BmeT110I CYCGRG 1 cut(s) 174
BmiI GGNNCC 2 cut(s) 231, 280
BmsI GCATC 1 cut(s) 196
BpmI CTGGAG 1 cut(s) 162
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse3DI GCAATG 1 cut(s) 265
BseLI CCNNNNNNNGG 1 cut(s) 239
BseMI GCAATG 1 cut(s) 265
BseSI GKGCMC 1 cut(s) 94
BsiHKCI CYCGRG 1 cut(s) 174
BslFI GGGAC 1 cut(s) 191
BslI CCNNNNNNNGG 1 cut(s) 239
BsmFI GGGAC 1 cut(s) 191
BsoBI CYCGRG 1 cut(s) 174
Bsp1286I GDGCHC 1 cut(s) 94
Bsp143I GATC 3 cut(s) 54, 214, 229
BspLI GGNNCC 2 cut(s) 231, 280
BspPI GGATC 2 cut(s) 224, 237
BspQI GCTCTTC 1 cut(s) 30
BsrDI GCAATG 1 cut(s) 265
BssMI GATC 3 cut(s) 54, 214, 229
Bst6I CTCTTC 1 cut(s) 30
BstKTI GATC 3 cut(s) 57, 217, 232
BstMBI GATC 3 cut(s) 54, 214, 229
BstSLI GKGCMC 1 cut(s) 94
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 2 cut(s) 12, 108
CviAII CATG 1 cut(s) 58
CviJI RGCY 2 cut(s) 23, 237
CviKI_1 RGCY 2 cut(s) 23, 237
DpnI GATC 3 cut(s) 56, 216, 231
DpnII GATC 3 cut(s) 54, 214, 229
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco88I CYCGRG 1 cut(s) 174
EcoT22I ATGCAT 1 cut(s) 211
FaeI CATG 1 cut(s) 61
FaiI YATR 5 cut(s) 59, 76, 138, 191, 275
FaqI GGGAC 1 cut(s) 191
FatI CATG 1 cut(s) 57
FbaI TGATCA 1 cut(s) 214
GsuI CTGGAG 1 cut(s) 162
Hin1II CATG 1 cut(s) 61
HphI GGTGA 2 cut(s) 73, 215
Hpy188I TCNGA 3 cut(s) 33, 54, 234
Hpy188III TCNNGA 1 cut(s) 176
HpyCH4V TGCA 3 cut(s) 38, 209, 222
Hsp92II CATG 1 cut(s) 61
Ksp22I TGATCA 1 cut(s) 214
Kzo9I GATC 3 cut(s) 54, 214, 229
LguI GCTCTTC 1 cut(s) 30
LpnPI CCDG 2 cut(s) 73, 126
LweI GCATC 1 cut(s) 196
MalI GATC 3 cut(s) 56, 216, 231
MboI GATC 3 cut(s) 54, 214, 229
MboII GAAGA 1 cut(s) 17
MflI RGATCY 1 cut(s) 229
MhlI GDGCHC 1 cut(s) 94
MluCI AATT 2 cut(s) 99, 154
MnlI CCTC 1 cut(s) 39
Mph1103I ATGCAT 1 cut(s) 211
MseI TTAA 1 cut(s) 269
MslI CAYNNNNRTG 2 cut(s) 62, 165
NdeII GATC 3 cut(s) 54, 214, 229
NlaIII CATG 1 cut(s) 61
NlaIV GGNNCC 2 cut(s) 231, 280
NsiI ATGCAT 1 cut(s) 211
PciSI GCTCTTC 1 cut(s) 30
PspN4I GGNNCC 2 cut(s) 231, 280
PsuI RGATCY 1 cut(s) 229
RseI CAYNNNNRTG 2 cut(s) 62, 165
SapI GCTCTTC 1 cut(s) 30
SaqAI TTAA 1 cut(s) 269
Sau3AI GATC 3 cut(s) 54, 214, 229
SduI GDGCHC 1 cut(s) 94
SetI ASST 2 cut(s) 239, 284
SfaNI GCATC 1 cut(s) 196
SmiMI CAYNNNNRTG 2 cut(s) 62, 165
Sse9I AATT 2 cut(s) 99, 154
TasI AATT 2 cut(s) 99, 154
Tru1I TTAA 1 cut(s) 269
Tru9I TTAA 1 cut(s) 269
TscAI CASTG 2 cut(s) 12, 115
TspDTI ATGAA 2 cut(s) 149, 276
TspRI CASTG 2 cut(s) 12, 115
XapI RAATTY 1 cut(s) 154
Zsp2I ATGCAT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.