Rroxscaffold_4G00303220

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0007529
Physical Location & Seq
Forward (+)
23607157 .. 23608129
973 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00303220.1

Sequence Viewer

Length: 366 bp
ATGGCAGTGGCAAAGTACTCGGCTCTTGCTCTGATTGCGTTTCTGATTTCTCCGATCATGGTGATGGCAAATCAGTCATACGAAGTTGACTGGTCAATTGGAGTTGATTTCACTGATTTTGCTACTCAAAATACTTTCTTTGCTGGAGATGTATTAAATTTTCATTATGATAGCGCTAATCACAATTTGGTTATAGCAACAGATGGTGATGCATTTGATCAATGCCAGATGACACCGAACTTGGGTTTTTATAAAAGTGGCAATGAAGCATTAACCTTGGTTGAACCTGGAAACTATTATTTCATGTGCGAGTATAATTGCAAATCTGATGGCATGAAGATGTCAGTGTATGTGAACAATATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

121

Amino Acids

13.51

Weight (kDa)

4.13

Isoelectric Point (pI)

30.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 31 - 107 6.9e-14 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 252
AcsI RAATTY 1 cut(s) 157
AfaI GTAC 1 cut(s) 17
AfeI AGCGCT 1 cut(s) 175
AfiI CCNNNNNNNGG 1 cut(s) 242
AgsI TTSAA 1 cut(s) 284
AjnI CCWGG 1 cut(s) 286
Aor51HI AGCGCT 1 cut(s) 175
ApoI RAATTY 1 cut(s) 157
AspLEI GCGC 1 cut(s) 176
AsuHPI GGTGA 2 cut(s) 73, 218
BccI CCATC 3 cut(s) 58, 197, 323
BcgI CGANNNNNNTGC 1 cut(s) 34
BciT130I CCWGG 1 cut(s) 288
BclI TGATCA 1 cut(s) 217
BfoI RGCGCY 1 cut(s) 177
BmcAI AGTACT 1 cut(s) 17
Bme1390I CCNGG 1 cut(s) 288
BmrFI CCNGG 1 cut(s) 288
BmsI GCATC 1 cut(s) 199
BpmI CTGGAG 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 276
Bsc4I CCNNNNNNNGG 1 cut(s) 242
Bse1I ACTGG 1 cut(s) 95
Bse3DI GCAATG 1 cut(s) 268
BseBI CCWGG 1 cut(s) 288
BseDI CCNNGG 1 cut(s) 276
BseLI CCNNNNNNNGG 1 cut(s) 242
BseMI GCAATG 1 cut(s) 268
BseNI ACTGG 1 cut(s) 95
BslI CCNNNNNNNGG 1 cut(s) 242
Bsp143I GATC 2 cut(s) 54, 217
BsrDI GCAATG 1 cut(s) 268
BsrI ACTGG 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 2 cut(s) 54, 217
BssT1I CCWWGG 1 cut(s) 276
Bst2UI CCWGG 1 cut(s) 288
BstH2I RGCGCY 1 cut(s) 177
BstHHI GCGC 1 cut(s) 176
BstKTI GATC 2 cut(s) 57, 220
BstMBI GATC 2 cut(s) 54, 217
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNI CCWGG 1 cut(s) 288
BstSCI CCNGG 1 cut(s) 286
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 3 cut(s) 12, 111, 351
CfoI GCGC 1 cut(s) 176
Csp6I GTAC 1 cut(s) 16
CviAII CATG 3 cut(s) 58, 304, 334
CviJI RGCY 1 cut(s) 23
CviKI_1 RGCY 1 cut(s) 23
CviQI GTAC 1 cut(s) 16
DpnI GATC 2 cut(s) 56, 219
DpnII GATC 2 cut(s) 54, 217
Eco130I CCWWGG 1 cut(s) 276
Eco47III AGCGCT 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 276
EcoT22I ATGCAT 1 cut(s) 214
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 3 cut(s) 61, 307, 337
FatI CATG 3 cut(s) 57, 303, 333
FbaI TGATCA 1 cut(s) 217
GlaI GCGC 1 cut(s) 175
GsuI CTGGAG 1 cut(s) 165
HaeII RGCGCY 1 cut(s) 177
HhaI GCGC 1 cut(s) 176
Hin1II CATG 3 cut(s) 61, 307, 337
Hin6I GCGC 1 cut(s) 174
HinP1I GCGC 1 cut(s) 174
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HphI GGTGA 2 cut(s) 73, 218
Hpy166II GTNNAC 2 cut(s) 88, 355
Hpy188I TCNGA 4 cut(s) 33, 45, 54, 328
Hpy8I GTNNAC 2 cut(s) 88, 355
HpyCH4V TGCA 2 cut(s) 212, 321
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
Hsp92II CATG 3 cut(s) 61, 307, 337
HspAI GCGC 1 cut(s) 174
Ksp22I TGATCA 1 cut(s) 217
Kzo9I GATC 2 cut(s) 54, 217
LpnPI CCDG 5 cut(s) 76, 129, 239, 273, 300
LweI GCATC 1 cut(s) 199
MalI GATC 2 cut(s) 56, 219
MboI GATC 2 cut(s) 54, 217
MboII GAAGA 1 cut(s) 349
MfeI CAATTG 1 cut(s) 96
MluCI AATT 4 cut(s) 96, 157, 184, 316
Mph1103I ATGCAT 1 cut(s) 214
MseI TTAA 2 cut(s) 155, 272
MslI CAYNNNNRTG 2 cut(s) 62, 338
MspR9I CCNGG 1 cut(s) 288
MunI CAATTG 1 cut(s) 96
MvaI CCWGG 1 cut(s) 288
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeII GATC 2 cut(s) 54, 217
NlaIII CATG 3 cut(s) 61, 307, 337
NsiI ATGCAT 1 cut(s) 214
PsiI TTATAA 1 cut(s) 252
Psp6I CCWGG 1 cut(s) 286
PspGI CCWGG 1 cut(s) 286
RsaI GTAC 1 cut(s) 17
RsaNI GTAC 1 cut(s) 16
RseI CAYNNNNRTG 2 cut(s) 62, 338
SaqAI TTAA 2 cut(s) 155, 272
Sau3AI GATC 2 cut(s) 54, 217
ScaI AGTACT 1 cut(s) 17
ScrFI CCNGG 1 cut(s) 288
SetI ASST 2 cut(s) 278, 289
SfaNI GCATC 1 cut(s) 199
SmiMI CAYNNNNRTG 2 cut(s) 62, 338
Sse9I AATT 4 cut(s) 96, 157, 184, 316
StyD4I CCNGG 1 cut(s) 286
StyI CCWWGG 1 cut(s) 276
TasI AATT 4 cut(s) 96, 157, 184, 316
TatI WGTACW 1 cut(s) 15
Tru1I TTAA 2 cut(s) 155, 272
Tru9I TTAA 2 cut(s) 155, 272
TscAI CASTG 3 cut(s) 12, 118, 351
TspDTI ATGAA 4 cut(s) 152, 279, 292, 350
TspRI CASTG 3 cut(s) 12, 118, 351
XapI RAATTY 1 cut(s) 157
ZrmI AGTACT 1 cut(s) 17
Zsp2I ATGCAT 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.