FvH4_7g12960

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0007529
Physical Location & Seq
Reverse (-)
11711657 .. 11712223
567 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g12960.t1

Sequence Viewer

Length: 360 bp
ATGGCAGTGGCACGATACTCGGCTCTTGCTCTGATTGCATTTCTTGTTTCTCCGATCATGGTGATGGCAACAACATACGACATTGTCTGGGCACTTGGAATTGATTACAGTACTGATTTTGTTGAACAAAACACTTTCTATGCTGGAGATGTGATAACTTTTCATTACGATGTTGCTCGAGACGATGTGGTTATAGCAACAGATGGTGATGCATTTGATCAATGCATGATGGAACCGAACTTGGGTCATTACCAAAGTGGCAATGATGCACTAACCTTGTGTGAACCTAAATATCATTATTTCATGTGTGGGTATCACTGCAAATCCAATGGCATGAAGATGTCGGTGTTTGTGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

120

Amino Acids

13.35

Weight (kDa)

4.4

Isoelectric Point (pI)

50.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 38 - 108 2.8e-12 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 112
AfiI CCNNNNNNNGG 1 cut(s) 242
AgsI TTSAA 1 cut(s) 125
Alw26I GTCTC 1 cut(s) 174
Ama87I CYCGRG 1 cut(s) 177
AsuHPI GGTGA 2 cut(s) 73, 218
AvaI CYCGRG 1 cut(s) 177
BaeGI GKGCMC 1 cut(s) 94
BccI CCATC 3 cut(s) 58, 197, 223
BcgI CGANNNNNNTGC 1 cut(s) 34
BclI TGATCA 1 cut(s) 217
BcoDI GTCTC 1 cut(s) 174
BfaI CTAG 1 cut(s) 358
BmcAI AGTACT 1 cut(s) 112
BmeT110I CYCGRG 1 cut(s) 177
BmiI GGNNCC 1 cut(s) 234
BmsI GCATC 2 cut(s) 199, 256
BpmI CTGGAG 1 cut(s) 165
Bsc4I CCNNNNNNNGG 1 cut(s) 242
Bse3DI GCAATG 1 cut(s) 268
BseLI CCNNNNNNNGG 1 cut(s) 242
BseMI GCAATG 1 cut(s) 268
BseSI GKGCMC 1 cut(s) 94
BsiHKCI CYCGRG 1 cut(s) 177
BslI CCNNNNNNNGG 1 cut(s) 242
BsmAI GTCTC 1 cut(s) 174
BsmBI CGTCTC 1 cut(s) 174
BsoBI CYCGRG 1 cut(s) 177
Bsp1286I GDGCHC 1 cut(s) 94
Bsp143I GATC 2 cut(s) 54, 217
BspLI GGNNCC 1 cut(s) 234
BsrDI GCAATG 1 cut(s) 268
BssMI GATC 2 cut(s) 54, 217
Bst4CI ACNGT 1 cut(s) 110
BstKTI GATC 2 cut(s) 57, 220
BstMAI GTCTC 1 cut(s) 174
BstMBI GATC 2 cut(s) 54, 217
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstSLI GKGCMC 1 cut(s) 94
BtsI GCAGTG 2 cut(s) 12, 316
BtsIMutI CAGTG 2 cut(s) 12, 316
Csp6I GTAC 1 cut(s) 111
CviAII CATG 4 cut(s) 58, 226, 304, 334
CviJI RGCY 1 cut(s) 23
CviKI_1 RGCY 1 cut(s) 23
CviQI GTAC 1 cut(s) 111
DpnI GATC 2 cut(s) 56, 219
DpnII GATC 2 cut(s) 54, 217
Eco88I CYCGRG 1 cut(s) 177
EcoT22I ATGCAT 2 cut(s) 214, 227
Esp3I CGTCTC 1 cut(s) 174
FaeI CATG 4 cut(s) 61, 229, 307, 337
FaiI YATR 7 cut(s) 59, 76, 141, 194, 227, 305, 335
FatI CATG 4 cut(s) 57, 225, 303, 333
FbaI TGATCA 1 cut(s) 217
FspBI CTAG 1 cut(s) 358
GsuI CTGGAG 1 cut(s) 165
Hin1II CATG 4 cut(s) 61, 229, 307, 337
HphI GGTGA 2 cut(s) 73, 218
Hpy166II GTNNAC 2 cut(s) 284, 355
Hpy188I TCNGA 2 cut(s) 33, 54
Hpy188III TCNNGA 1 cut(s) 179
Hpy8I GTNNAC 2 cut(s) 284, 355
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4V TGCA 5 cut(s) 38, 212, 225, 269, 321
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
Hsp92II CATG 4 cut(s) 61, 229, 307, 337
Ksp22I TGATCA 1 cut(s) 217
Kzo9I GATC 2 cut(s) 54, 217
LpnPI CCDG 2 cut(s) 73, 129
LweI GCATC 2 cut(s) 199, 256
MaeI CTAG 1 cut(s) 358
MalI GATC 2 cut(s) 56, 219
MboI GATC 2 cut(s) 54, 217
MboII GAAGA 1 cut(s) 349
MhlI GDGCHC 1 cut(s) 94
MluCI AATT 1 cut(s) 99
Mph1103I ATGCAT 2 cut(s) 214, 227
MslI CAYNNNNRTG 3 cut(s) 62, 168, 338
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeII GATC 2 cut(s) 54, 217
NlaIII CATG 4 cut(s) 61, 229, 307, 337
NlaIV GGNNCC 1 cut(s) 234
NsiI ATGCAT 2 cut(s) 214, 227
PaeR7I CTCGAG 1 cut(s) 177
PflFI GACNNNGTC 1 cut(s) 83
PspN4I GGNNCC 1 cut(s) 234
PsyI GACNNNGTC 1 cut(s) 83
RsaI GTAC 1 cut(s) 112
RsaNI GTAC 1 cut(s) 111
RseI CAYNNNNRTG 3 cut(s) 62, 168, 338
Sau3AI GATC 2 cut(s) 54, 217
ScaI AGTACT 1 cut(s) 112
SduI GDGCHC 1 cut(s) 94
SetI ASST 2 cut(s) 278, 289
SfaNI GCATC 2 cut(s) 199, 256
Sfr274I CTCGAG 1 cut(s) 177
SlaI CTCGAG 1 cut(s) 177
SmiMI CAYNNNNRTG 3 cut(s) 62, 168, 338
SmlI CTYRAG 1 cut(s) 177
SmoI CTYRAG 1 cut(s) 177
Sse9I AATT 1 cut(s) 99
SspMI CTAG 1 cut(s) 358
TaaI ACNGT 1 cut(s) 110
TaqI TCGA 1 cut(s) 178
TasI AATT 1 cut(s) 99
TatI WGTACW 1 cut(s) 110
TscAI CASTG 2 cut(s) 12, 323
TspDTI ATGAA 3 cut(s) 152, 292, 350
TspRI CASTG 2 cut(s) 12, 323
Tth111I GACNNNGTC 1 cut(s) 83
XhoI CTCGAG 1 cut(s) 177
XspI CTAG 1 cut(s) 358
ZrmI AGTACT 1 cut(s) 112
Zsp2I ATGCAT 2 cut(s) 214, 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.