Rw1G020740

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0007529
Physical Location & Seq
Reverse (-)
44430204 .. 44431183
980 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G020740.1

Sequence Viewer

Length: 372 bp
ATGGCAGTGGCAAAGTACTCGGCTCTTGCTCTGATTGCGTTTCTGGTTTCTCCGATCATGGTGATGGTGATGGCAAATCAGTCATACGAAGTTGACTGGTCAGTTGGAGTTGATTTCACTGAATTTGCTACTCAAAATACTTTCTTTGCTGGAGATGTATTAAATTTTCATTACGATAGCGCTAATCACAATTTGCTTATAGCAACAGATGGTGATGCATTTGATCAATGCCAGATGACACCGAACTTGGGTTTTTATAAAAGTGGCAATGAAGCATTAACCTTGGTTGAACCTGGAAACTATTATTTCATGTGTGAGTATAATTGCAAATCTGATGGCATGAAGATGTCAGTGTATGTGAACAATATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

123

Amino Acids

13.74

Weight (kDa)

4.16

Isoelectric Point (pI)

31.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 109 7.3e-14 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 258
AcsI RAATTY 2 cut(s) 122, 163
AfaI GTAC 1 cut(s) 17
AfeI AGCGCT 1 cut(s) 181
AfiI CCNNNNNNNGG 1 cut(s) 248
AgsI TTSAA 1 cut(s) 290
AjnI CCWGG 1 cut(s) 292
Aor51HI AGCGCT 1 cut(s) 181
ApoI RAATTY 2 cut(s) 122, 163
AspLEI GCGC 1 cut(s) 182
AsuHPI GGTGA 3 cut(s) 73, 79, 224
BccI CCATC 4 cut(s) 58, 64, 203, 329
BcgI CGANNNNNNTGC 1 cut(s) 34
BciT130I CCWGG 1 cut(s) 294
BclI TGATCA 1 cut(s) 223
BfoI RGCGCY 1 cut(s) 183
BmcAI AGTACT 1 cut(s) 17
Bme1390I CCNGG 1 cut(s) 294
BmrFI CCNGG 1 cut(s) 294
BmsI GCATC 1 cut(s) 205
BpmI CTGGAG 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 282
Bsc4I CCNNNNNNNGG 1 cut(s) 248
Bse1I ACTGG 1 cut(s) 101
Bse3DI GCAATG 1 cut(s) 274
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 1 cut(s) 282
BseLI CCNNNNNNNGG 1 cut(s) 248
BseMI GCAATG 1 cut(s) 274
BseNI ACTGG 1 cut(s) 101
BslI CCNNNNNNNGG 1 cut(s) 248
Bsp143I GATC 2 cut(s) 54, 223
BsrDI GCAATG 1 cut(s) 274
BsrI ACTGG 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 282
BssMI GATC 2 cut(s) 54, 223
BssT1I CCWWGG 1 cut(s) 282
Bst2UI CCWGG 1 cut(s) 294
BstH2I RGCGCY 1 cut(s) 183
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 2 cut(s) 57, 226
BstMBI GATC 2 cut(s) 54, 223
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNI CCWGG 1 cut(s) 294
BstSCI CCNGG 1 cut(s) 292
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 3 cut(s) 12, 117, 357
CfoI GCGC 1 cut(s) 182
Csp6I GTAC 1 cut(s) 16
CviAII CATG 3 cut(s) 58, 310, 340
CviJI RGCY 1 cut(s) 23
CviKI_1 RGCY 1 cut(s) 23
CviQI GTAC 1 cut(s) 16
DpnI GATC 2 cut(s) 56, 225
DpnII GATC 2 cut(s) 54, 223
Eco130I CCWWGG 1 cut(s) 282
Eco47III AGCGCT 1 cut(s) 181
EcoRII CCWGG 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 282
EcoT22I ATGCAT 1 cut(s) 220
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 3 cut(s) 61, 313, 343
FaiI YATR 9 cut(s) 59, 85, 200, 258, 311, 321, 341, 357, 368
FatI CATG 3 cut(s) 57, 309, 339
FbaI TGATCA 1 cut(s) 223
GlaI GCGC 1 cut(s) 181
GsuI CTGGAG 1 cut(s) 171
HaeII RGCGCY 1 cut(s) 183
HhaI GCGC 1 cut(s) 182
Hin1II CATG 3 cut(s) 61, 313, 343
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HphI GGTGA 3 cut(s) 73, 79, 224
Hpy166II GTNNAC 2 cut(s) 94, 361
Hpy188I TCNGA 3 cut(s) 33, 54, 334
Hpy8I GTNNAC 2 cut(s) 94, 361
HpyCH4V TGCA 2 cut(s) 218, 327
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
Hsp92II CATG 3 cut(s) 61, 313, 343
HspAI GCGC 1 cut(s) 180
Ksp22I TGATCA 1 cut(s) 223
Kzo9I GATC 2 cut(s) 54, 223
LpnPI CCDG 6 cut(s) 29, 82, 135, 245, 279, 306
LweI GCATC 1 cut(s) 205
MalI GATC 2 cut(s) 56, 225
MboI GATC 2 cut(s) 54, 223
MboII GAAGA 1 cut(s) 355
MluCI AATT 4 cut(s) 122, 163, 190, 322
MmeI TCCRAC 1 cut(s) 85
Mph1103I ATGCAT 1 cut(s) 220
MseI TTAA 2 cut(s) 161, 278
MslI CAYNNNNRTG 2 cut(s) 62, 344
MspR9I CCNGG 1 cut(s) 294
MvaI CCWGG 1 cut(s) 294
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeII GATC 2 cut(s) 54, 223
NlaIII CATG 3 cut(s) 61, 313, 343
NsiI ATGCAT 1 cut(s) 220
PsiI TTATAA 1 cut(s) 258
Psp6I CCWGG 1 cut(s) 292
PspGI CCWGG 1 cut(s) 292
RsaI GTAC 1 cut(s) 17
RsaNI GTAC 1 cut(s) 16
RseI CAYNNNNRTG 2 cut(s) 62, 344
SaqAI TTAA 2 cut(s) 161, 278
Sau3AI GATC 2 cut(s) 54, 223
ScaI AGTACT 1 cut(s) 17
ScrFI CCNGG 1 cut(s) 294
SetI ASST 2 cut(s) 284, 295
SfaNI GCATC 1 cut(s) 205
SmiMI CAYNNNNRTG 2 cut(s) 62, 344
Sse9I AATT 4 cut(s) 122, 163, 190, 322
StyD4I CCNGG 1 cut(s) 292
StyI CCWWGG 1 cut(s) 282
TasI AATT 4 cut(s) 122, 163, 190, 322
TatI WGTACW 1 cut(s) 15
Tru1I TTAA 2 cut(s) 161, 278
Tru9I TTAA 2 cut(s) 161, 278
TscAI CASTG 3 cut(s) 12, 124, 357
TspDTI ATGAA 4 cut(s) 158, 285, 298, 356
TspRI CASTG 3 cut(s) 12, 124, 357
XapI RAATTY 2 cut(s) 122, 163
ZrmI AGTACT 1 cut(s) 17
Zsp2I ATGCAT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.