Rh1BG209700

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0007529
Physical Location & Seq
Reverse (-)
32807223 .. 32808251
1029 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG209700.1

Sequence Viewer

Length: 369 bp
ATGGCAGTGGCACAATACTCGGCTCTTGCTCTGATTGCGTTTCTGGTTTCTCCGATCATGGTGATGGTGATGGCAAATTCATACGAAGTTGACTGGTCAACTGAAATTGCTTACAGTGGTTTTGCTCATGAAAACACTTTCTTTGCTGGAGATGTACTCAATTTTCATTACGATAAGAATTATCACAATGTGGTTGTAGCAACAGATAGTGCTGCATTTGAACAATGCAACATACAACCGAACTTAGGTTTCTATACAAATGGCAATAAAGCATTAACCTTGGTTGAAGCTGGATACTATTATTTCATGTGTGAGTATAACTGCGAATCTGATGGCATGAAGATGTCAATGTATGTGTACAATATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

122

Amino Acids

13.81

Weight (kDa)

4.3

Isoelectric Point (pI)

41.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 32 - 107 5.5e-16 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 76
AdeI CACNNNGTG 1 cut(s) 190
AfaI GTAC 2 cut(s) 156, 359
AfiI CCNNNNNNNGG 1 cut(s) 245
AgsI TTSAA 2 cut(s) 221, 287
AluBI AGCT 1 cut(s) 290
AluI AGCT 1 cut(s) 290
ApeKI GCWGC 1 cut(s) 212
ApoI RAATTY 1 cut(s) 76
AsuHPI GGTGA 2 cut(s) 73, 79
BbvI GCAGC 1 cut(s) 199
BccI CCATC 3 cut(s) 58, 64, 326
BcgI CGANNNNNNTGC 1 cut(s) 34
BciVI GTATCC 1 cut(s) 287
BfuI GTATCC 1 cut(s) 287
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
BplI GAGNNNNNCTC 2 cut(s) 141, 173
BpmI CTGGAG 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 279
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse1I ACTGG 1 cut(s) 98
BseDI CCNNGG 1 cut(s) 279
BseLI CCNNNNNNNGG 1 cut(s) 245
BseNI ACTGG 1 cut(s) 98
BseXI GCAGC 1 cut(s) 199
BslI CCNNNNNNNGG 1 cut(s) 245
Bsp1407I TGTACA 1 cut(s) 357
Bsp143I GATC 1 cut(s) 54
BspHI TCATGA 1 cut(s) 127
BsrGI TGTACA 1 cut(s) 357
BsrI ACTGG 1 cut(s) 98
BssECI CCNNGG 1 cut(s) 279
BssMI GATC 1 cut(s) 54
BssT1I CCWWGG 1 cut(s) 279
Bst4CI ACNGT 1 cut(s) 116
BstAUI TGTACA 1 cut(s) 357
BstDEI CTNAG 1 cut(s) 244
BstKTI GATC 1 cut(s) 57
BstMBI GATC 1 cut(s) 54
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstV1I GCAGC 1 cut(s) 199
BsuI GTATCC 1 cut(s) 287
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 2 cut(s) 12, 121
CciI TCATGA 1 cut(s) 127
Csp6I GTAC 2 cut(s) 155, 358
CviAII CATG 4 cut(s) 58, 128, 307, 337
CviJI RGCY 2 cut(s) 23, 290
CviKI_1 RGCY 2 cut(s) 23, 290
CviQI GTAC 2 cut(s) 155, 358
DdeI CTNAG 1 cut(s) 244
DpnI GATC 1 cut(s) 56
DpnII GATC 1 cut(s) 54
DraIII CACNNNGTG 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 279
EcoT14I CCWWGG 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 4 cut(s) 61, 131, 310, 340
FatI CATG 4 cut(s) 57, 127, 306, 336
Fnu4HI GCNGC 1 cut(s) 213
Fsp4HI GCNGC 1 cut(s) 213
GluI GCNGC 1 cut(s) 213
GsuI CTGGAG 1 cut(s) 168
Hin1II CATG 4 cut(s) 61, 131, 310, 340
HincII GTYRAC 2 cut(s) 91, 99
HindII GTYRAC 2 cut(s) 91, 99
HinfI GANTC 1 cut(s) 326
HphI GGTGA 2 cut(s) 73, 79
Hpy166II GTNNAC 3 cut(s) 91, 99, 358
Hpy188I TCNGA 3 cut(s) 33, 54, 331
Hpy188III TCNNGA 1 cut(s) 128
Hpy8I GTNNAC 3 cut(s) 91, 99, 358
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4V TGCA 2 cut(s) 215, 228
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 1 cut(s) 244
Hsp92II CATG 4 cut(s) 61, 131, 310, 340
Kzo9I GATC 1 cut(s) 54
LpnPI CCDG 4 cut(s) 29, 79, 132, 276
Lsp1109I GCAGC 1 cut(s) 199
MalI GATC 1 cut(s) 56
MboI GATC 1 cut(s) 54
MboII GAAGA 1 cut(s) 352
MluCI AATT 4 cut(s) 76, 105, 160, 178
MseI TTAA 1 cut(s) 275
MslI CAYNNNNRTG 2 cut(s) 62, 341
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeII GATC 1 cut(s) 54
NlaIII CATG 4 cut(s) 61, 131, 310, 340
PagI TCATGA 1 cut(s) 127
PfeI GAWTC 1 cut(s) 326
PkrI GCNGC 1 cut(s) 214
RsaI GTAC 2 cut(s) 156, 359
RsaNI GTAC 2 cut(s) 155, 358
RseI CAYNNNNRTG 2 cut(s) 62, 341
SaqAI TTAA 1 cut(s) 275
SatI GCNGC 1 cut(s) 213
Sau3AI GATC 1 cut(s) 54
SetI ASST 3 cut(s) 250, 281, 292
SmiMI CAYNNNNRTG 2 cut(s) 62, 341
Sse9I AATT 4 cut(s) 76, 105, 160, 178
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 116
TasI AATT 4 cut(s) 76, 105, 160, 178
TatI WGTACW 2 cut(s) 154, 357
TfiI GAWTC 1 cut(s) 326
Tru1I TTAA 1 cut(s) 275
Tru9I TTAA 1 cut(s) 275
TscAI CASTG 2 cut(s) 12, 121
TseI GCWGC 1 cut(s) 212
TspDTI ATGAA 5 cut(s) 69, 144, 155, 295, 353
TspRI CASTG 2 cut(s) 12, 121
XapI RAATTY 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.