FvH4_7g15680

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0007530
Physical Location & Seq
Reverse (-)
13530836 .. 13531738
903 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g15680.t1

Sequence Viewer

Length: 903 bp
ATGGCTGCCTTGATCACCAAGTTTTGTTCTCAAGCTCTCATTATCTTCCTTCTCATTCTCCCTTCCTTGGTTTCCAAGTCATGTGCTGCAAGCATTGTGGTTTACTGGGGTCAAAATGGAGGCGAGGGCACACTAACAGACACATGTGCATCGGGGAGATATGAAATCGTCAACATTGCATTTCTCTCCCAATTTGGCAATGGCCAAACTCCTTTAATCAACCTAGCCGATCACTGTGATCCGGCATCCAATGGCTGCCAACGCTTCAGCAATGAAGTCAGAAACTGCCAAAACCAAGGGATTAAGGTCCTGCTTTCAATTGGTGGTGCCGGTGGGAGCTACACACTATCAGATGAAGATGATGCTAGGCGTGTAGCAGACTACATTTGGAATAACTTCTTAGGAGGACAATCAAACTCGAGGCCTTTAGGTGACGCGGTCTTAGATGGGGTGGATTTCGACATTGAGATGGGTGTACCTCACTATGATGCACTGGCTAGGAAGTTATCCGAGTATAGCACAAGTAGCCGAAAGGTACTCTTATCTGCAGCACCACAATGCCCATTTCCTGACCAGCTCCTCAACGGTGCATTAACTACAGGCCTATTTGATTATGTTTGGGTTCAATTCTACAACAACCCACAATGTGAATATAGCTCTAGTAATTTTGATACCTTCAAGAACTCATGGAACCAATGGAACAACATAGACGCTAGATTCTTCTTTGTCGGGCTTCCAGCTTCGCAGGCAGCTGCTGGCAGTGGGTATGTGCCTTCAAATGATATGATAAACCAGGTGTTACCATTTGTTAAGATGTCTGGCAAGTATGGAGGTGTCATGCTCTATGATAGGTTTCAAGATATCCAGACCGGATATAGTACTCAAATCCAAGGCAGTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

301

Amino Acids

32.74

Weight (kDa)

4.7

Isoelectric Point (pI)

34.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 32 - 229 3.7e-22 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 326
AccII CGCG 1 cut(s) 437
AciI CCGC 1 cut(s) 437
AclWI GGATC 1 cut(s) 233
AcoI YGGCCR 1 cut(s) 202
AcuI CTGAAG 1 cut(s) 250
AdeI CACNNNGTG 1 cut(s) 647
AfaI GTAC 3 cut(s) 477, 537, 880
AfiI CCNNNNNNNGG 1 cut(s) 67
AflIII ACRYGT 1 cut(s) 143
AgsI TTSAA 5 cut(s) 318, 626, 679, 777, 857
AjnI CCWGG 1 cut(s) 792
AluBI AGCT 6 cut(s) 35, 339, 577, 657, 740, 752
AluI AGCT 6 cut(s) 35, 339, 577, 657, 740, 752
AlwI GGATC 1 cut(s) 233
AlwNI CAGNNNCTG 2 cut(s) 285, 755
Ama87I CYCGRG 1 cut(s) 418
AoxI GGCC 3 cut(s) 202, 422, 601
ApeKI GCWGC 6 cut(s) 5, 86, 255, 548, 749, 752
Asp700I GAANNNNTTC 1 cut(s) 395
AspS9I GGNCC 1 cut(s) 307
AsuHPI GGTGA 2 cut(s) 7, 443
AvaI CYCGRG 1 cut(s) 418
AvaII GGWCC 1 cut(s) 307
BaeGI GKGCMC 1 cut(s) 131
BalI TGGCCA 1 cut(s) 204
BanI GGYRCC 1 cut(s) 326
BbvI GCAGC 5 cut(s) 73, 242, 560, 739, 761
BccI CCATC 2 cut(s) 440, 463
BciT130I CCWGG 1 cut(s) 794
BclI TGATCA 1 cut(s) 12
BfaI CTAG 5 cut(s) 224, 366, 498, 660, 714
BfmI CTRYAG 2 cut(s) 546, 597
BisI GCNGC 6 cut(s) 6, 87, 256, 549, 750, 753
BlsI GCNGC 6 cut(s) 7, 88, 257, 550, 751, 754
BmcAI AGTACT 1 cut(s) 880
Bme1390I CCNGG 1 cut(s) 794
Bme18I GGWCC 1 cut(s) 307
BmeT110I CYCGRG 1 cut(s) 418
BmgT120I GGNCC 1 cut(s) 307
BmiI GGNNCC 2 cut(s) 328, 692
BmrFI CCNGG 1 cut(s) 794
BmrI ACTGGG 1 cut(s) 115
BmsI GCATC 4 cut(s) 158, 254, 352, 478
BmuI ACTGGG 1 cut(s) 115
BpuEI CTTGAG 1 cut(s) 15
BsaJI CCNNGG 3 cut(s) 66, 295, 889
BsaWI WCCGGW 1 cut(s) 869
Bsc4I CCNNNNNNNGG 1 cut(s) 67
Bse118I RCCGGY 1 cut(s) 329
Bse1I ACTGG 2 cut(s) 110, 498
Bse3DI GCAATG 3 cut(s) 174, 205, 277
BseBI CCWGG 1 cut(s) 794
BseDI CCNNGG 3 cut(s) 66, 295, 889
BseGI GGATG 1 cut(s) 245
BseLI CCNNNNNNNGG 1 cut(s) 67
BseMI GCAATG 3 cut(s) 174, 205, 277
BseNI ACTGG 2 cut(s) 110, 498
BseRI GAGGAG 1 cut(s) 569
BseSI GKGCMC 1 cut(s) 131
BseXI GCAGC 5 cut(s) 73, 242, 560, 739, 761
Bsh1236I CGCG 1 cut(s) 437
BshFI GGCC 3 cut(s) 204, 424, 603
BshNI GGYRCC 1 cut(s) 326
BsiHKCI CYCGRG 1 cut(s) 418
BsiSI CCGG 3 cut(s) 242, 330, 870
BslI CCNNNNNNNGG 1 cut(s) 67
BsnI GGCC 3 cut(s) 204, 424, 603
BsoBI CYCGRG 1 cut(s) 418
Bsp1286I GDGCHC 1 cut(s) 131
Bsp143I GATC 3 cut(s) 12, 229, 238
BspACI CCGC 1 cut(s) 437
BspANI GGCC 3 cut(s) 204, 424, 603
BspFNI CGCG 1 cut(s) 437
BspLI GGNNCC 2 cut(s) 328, 692
BspMAI CTGCAG 1 cut(s) 550
BspPI GGATC 1 cut(s) 233
BspT107I GGYRCC 1 cut(s) 326
BsrDI GCAATG 3 cut(s) 174, 205, 277
BsrFI RCCGGY 1 cut(s) 329
BsrI ACTGG 2 cut(s) 110, 498
BssAI RCCGGY 1 cut(s) 329
BssECI CCNNGG 3 cut(s) 66, 295, 889
BssMI GATC 3 cut(s) 12, 229, 238
BssT1I CCWWGG 3 cut(s) 66, 295, 889
Bst2UI CCWGG 1 cut(s) 794
Bst4CI ACNGT 2 cut(s) 236, 587
BstC8I GCNNGC 3 cut(s) 91, 747, 757
BstDEI CTNAG 2 cut(s) 400, 442
BstF5I GGATG 1 cut(s) 245
BstFNI CGCG 1 cut(s) 437
BstKTI GATC 3 cut(s) 15, 232, 241
BstMBI GATC 3 cut(s) 12, 229, 238
BstMWI GCNNNNNNNGC 3 cut(s) 261, 525, 746
BstNI CCWGG 1 cut(s) 794
BstNSI RCATGY 1 cut(s) 147
BstSCI CCNGG 1 cut(s) 792
BstSFI CTRYAG 2 cut(s) 546, 597
BstSLI GKGCMC 1 cut(s) 131
BstUI CGCG 1 cut(s) 437
BstV1I GCAGC 5 cut(s) 73, 242, 560, 739, 761
BsuRI GGCC 3 cut(s) 204, 424, 603
BtsCI GGATG 1 cut(s) 245
BtsI GCAGTG 1 cut(s) 766
BtsIMutI CAGTG 3 cut(s) 232, 491, 766
Cac8I GCNNGC 3 cut(s) 91, 747, 757
CaiI CAGNNNCTG 2 cut(s) 285, 755
Cfr10I RCCGGY 1 cut(s) 329
Cfr13I GGNCC 1 cut(s) 307
CseI GACGC 2 cut(s) 443, 719
CsiI ACCWGGT 1 cut(s) 792
Csp6I GTAC 3 cut(s) 476, 536, 879
CspCI CAANNNNNGTGG 2 cut(s) 78, 113
CviAII CATG 4 cut(s) 81, 144, 687, 838
CviQI GTAC 3 cut(s) 476, 536, 879
DdeI CTNAG 2 cut(s) 400, 442
DpnI GATC 3 cut(s) 14, 231, 240
DpnII GATC 3 cut(s) 12, 229, 238
DraIII CACNNNGTG 1 cut(s) 647
EaeI YGGCCR 1 cut(s) 202
Eco130I CCWWGG 3 cut(s) 66, 295, 889
Eco147I AGGCCT 2 cut(s) 424, 603
Eco32I GATATC 1 cut(s) 862
Eco47I GGWCC 1 cut(s) 307
Eco57I CTGAAG 1 cut(s) 250
Eco88I CYCGRG 1 cut(s) 418
EcoO109I RGGNCCY 1 cut(s) 307
EcoRII CCWGG 1 cut(s) 792
EcoRV GATATC 1 cut(s) 862
EcoT14I CCWWGG 3 cut(s) 66, 295, 889
ErhI CCWWGG 3 cut(s) 66, 295, 889
FaeI CATG 4 cut(s) 84, 147, 690, 841
FalI AAGNNNNNCTT 2 cut(s) 524, 556
FatI CATG 4 cut(s) 80, 143, 686, 837
FbaI TGATCA 1 cut(s) 12
Fnu4HI GCNGC 6 cut(s) 6, 87, 256, 549, 750, 753
FokI GGATG 1 cut(s) 232
Fsp4HI GCNGC 6 cut(s) 6, 87, 256, 549, 750, 753
FspBI CTAG 5 cut(s) 224, 366, 498, 660, 714
GluI GCNGC 6 cut(s) 6, 87, 256, 549, 750, 753
HaeIII GGCC 3 cut(s) 204, 424, 603
HapII CCGG 3 cut(s) 242, 330, 870
HgaI GACGC 2 cut(s) 443, 719
Hin1II CATG 4 cut(s) 84, 147, 690, 841
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 1 cut(s) 717
HpaII CCGG 3 cut(s) 242, 330, 870
HphI GGTGA 2 cut(s) 7, 443
Hpy166II GTNNAC 3 cut(s) 103, 172, 476
Hpy188I TCNGA 3 cut(s) 281, 352, 511
Hpy188III TCNNGA 4 cut(s) 569, 679, 857, 865
Hpy8I GTNNAC 3 cut(s) 103, 172, 476
HpyAV CCTTC 4 cut(s) 59, 72, 685, 783
HpyCH4III ACNGT 2 cut(s) 236, 587
HpyCH4V TGCA 6 cut(s) 89, 149, 179, 491, 548, 590
HpyF10VI GCNNNNNNNGC 3 cut(s) 261, 525, 746
HpyF3I CTNAG 2 cut(s) 400, 442
Hsp92II CATG 4 cut(s) 84, 147, 690, 841
Ksp22I TGATCA 1 cut(s) 12
Kzo9I GATC 3 cut(s) 12, 229, 238
LmnI GCTCC 2 cut(s) 336, 582
Lsp1109I GCAGC 5 cut(s) 73, 242, 560, 739, 761
LweI GCATC 4 cut(s) 158, 254, 352, 478
MabI ACCWGGT 1 cut(s) 792
MaeI CTAG 5 cut(s) 224, 366, 498, 660, 714
MaeIII GTNAC 2 cut(s) 431, 798
MalI GATC 3 cut(s) 14, 231, 240
MboI GATC 3 cut(s) 12, 229, 238
MboII GAAGA 3 cut(s) 37, 368, 712
MfeI CAATTG 1 cut(s) 318
MhlI GDGCHC 1 cut(s) 131
MlsI TGGCCA 1 cut(s) 204
MluCI AATT 4 cut(s) 191, 318, 626, 664
MluNI TGGCCA 1 cut(s) 204
MnlI CCTC 7 cut(s) 113, 118, 398, 414, 489, 590, 824
Mox20I TGGCCA 1 cut(s) 204
MroXI GAANNNNTTC 1 cut(s) 395
MscI TGGCCA 1 cut(s) 204
MseI TTAA 5 cut(s) 215, 303, 593, 810, 901
MslI CAYNNNNRTG 3 cut(s) 467, 486, 556
Msp20I TGGCCA 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 752
MspI CCGG 3 cut(s) 242, 330, 870
MspR9I CCNGG 1 cut(s) 794
MunI CAATTG 1 cut(s) 318
MvaI CCWGG 1 cut(s) 794
MvnI CGCG 1 cut(s) 437
MwoI GCNNNNNNNGC 3 cut(s) 261, 525, 746
NdeII GATC 3 cut(s) 12, 229, 238
NlaIII CATG 4 cut(s) 84, 147, 690, 841
NlaIV GGNNCC 2 cut(s) 328, 692
NmuCI GTSAC 1 cut(s) 431
NspI RCATGY 1 cut(s) 147
PaeR7I CTCGAG 1 cut(s) 418
PceI AGGCCT 2 cut(s) 424, 603
PciI ACATGT 1 cut(s) 143
PdmI GAANNNNTTC 1 cut(s) 395
PfeI GAWTC 1 cut(s) 717
PflFI GACNNNGTC 1 cut(s) 437
PkrI GCNGC 6 cut(s) 7, 88, 257, 550, 751, 754
PpuMI RGGWCCY 1 cut(s) 307
PscI ACATGT 1 cut(s) 143
Psp5II RGGWCCY 1 cut(s) 307
Psp6I CCWGG 1 cut(s) 792
PspGI CCWGG 1 cut(s) 792
PspN4I GGNNCC 2 cut(s) 328, 692
PspPI GGNCC 1 cut(s) 307
PspPPI RGGWCCY 1 cut(s) 307
PspXI VCTCGAGB 1 cut(s) 418
PstI CTGCAG 1 cut(s) 550
PstNI CAGNNNCTG 2 cut(s) 285, 755
PsyI GACNNNGTC 1 cut(s) 437
PvuII CAGCTG 1 cut(s) 752
RsaI GTAC 3 cut(s) 477, 537, 880
RsaNI GTAC 3 cut(s) 476, 536, 879
RseI CAYNNNNRTG 3 cut(s) 467, 486, 556
SaqAI TTAA 5 cut(s) 215, 303, 593, 810, 901
SatI GCNGC 6 cut(s) 6, 87, 256, 549, 750, 753
Sau3AI GATC 3 cut(s) 12, 229, 238
Sau96I GGNCC 1 cut(s) 307
ScaI AGTACT 1 cut(s) 880
ScrFI CCNGG 1 cut(s) 794
SduI GDGCHC 1 cut(s) 131
SexAI ACCWGGT 1 cut(s) 792
SfaNI GCATC 4 cut(s) 158, 254, 352, 478
SfcI CTRYAG 2 cut(s) 546, 597
Sfr274I CTCGAG 1 cut(s) 418
SinI GGWCC 1 cut(s) 307
SlaI CTCGAG 1 cut(s) 418
SmiMI CAYNNNNRTG 3 cut(s) 467, 486, 556
SmlI CTYRAG 2 cut(s) 30, 418
SmoI CTYRAG 2 cut(s) 30, 418
Sse9I AATT 4 cut(s) 191, 318, 626, 664
SseBI AGGCCT 2 cut(s) 424, 603
SsiI CCGC 1 cut(s) 437
SspMI CTAG 5 cut(s) 224, 366, 498, 660, 714
StuI AGGCCT 2 cut(s) 424, 603
StyD4I CCNGG 1 cut(s) 792
StyI CCWWGG 3 cut(s) 66, 295, 889
TaaI ACNGT 2 cut(s) 236, 587
TaqI TCGA 2 cut(s) 419, 459
TasI AATT 4 cut(s) 191, 318, 626, 664
TatI WGTACW 1 cut(s) 878
TfiI GAWTC 1 cut(s) 717
Tru1I TTAA 5 cut(s) 215, 303, 593, 810, 901
Tru9I TTAA 5 cut(s) 215, 303, 593, 810, 901
TscAI CASTG 3 cut(s) 239, 498, 766
TseFI GTSAC 1 cut(s) 431
TseI GCWGC 6 cut(s) 5, 86, 255, 548, 749, 752
Tsp45I GTSAC 1 cut(s) 431
TspDTI ATGAA 3 cut(s) 177, 288, 369
TspRI CASTG 3 cut(s) 239, 498, 766
Tth111I GACNNNGTC 1 cut(s) 437
VpaK11BI GGWCC 1 cut(s) 307
XceI RCATGY 1 cut(s) 147
XcmI CCANNNNNNNNNTGG 1 cut(s) 197
XhoI CTCGAG 1 cut(s) 418
XmnI GAANNNNTTC 1 cut(s) 395
XspI CTAG 5 cut(s) 224, 366, 498, 660, 714
ZrmI AGTACT 1 cut(s) 880
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.