Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0007530

Physical Location & Seq

Genomic Coordinates Reverse (-)

11303920 .. 11304576

Gene Structure 657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g15500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCTTCCCTGTTTACCGAGTCTTGGTCTAAAGTTGTCATTATCTTCCTACTGATTCTCCCATTTTTGGTTTCAAGGCACCTTCTGATCGTGCGCCGGGCGCATTGTGGTTTACTGGGGCCAAAATGGAGGGAGGGCGCACTAACAGCAACATGTAACACAGGAAGATACCGGATTGTAAACATAGCATTCCTCTCACAGTTTGGCAATGGCCAAACCCCTCAAATCAACTTAGCCGGCCACTGTGATCCGGCGTCTAACGGCTGTCAAAAAGTGAGCACCGGCATCAGAAACTGCCAGAACCAAGGCATTAAGGTCCTGCTTTCGATTGGTGGCAGCTTGGGGAGTTACACGCTATCATCTGCAGATGATGCTAGAGGTGTAGCGGACTACATATGGAATAACTTCTTAGGGGGGCAATCAAACTCGAGGCCTCTAGGAGACGCCGTATTGGATGGCGTGGACTTCGATATCGAGAGAGGCAGAAAAGTGTCCTTAAGTGCAGCACCGCAATGTCCGTTTCCTGACCAGAAACTCAATGGTGCACTAACCACTGGCCTATTTGACTATGTTTGGGTTCAATTCTACAATAATCCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

201

Amino Acids

21.72

Weight (kDa)

8.81

Isoelectric Point (pI)

26.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g15680
prunus_persica	Prupe.2G181400_v2.0.a1 Prupe.2G181500_v2.0.a1 Prupe.2G181600_v2.0.a1
pyrus_communis	pycom07g12500 pycom07g12560 pycom07g12610 pycom13g15500 pycom15g35750
rosa_chinensis	RchiOBHm_Chr1g0358401 RchiOBHm_Chr1g0358411
rosa_laevigata	RLG00000027962 RLG00000027963
rosa_multiflora	Rmu_sc0000147.1_g000093 Rmu_sc0002144.1_g000033
rosa_roxburghii	Rroxscaffold_4G00297990
rosa_rugosa	Rorug01G0261500
rosa_samantha	Rh1AG275800 Rh1AG276100 Rh1BG242400 Rh1BG242600 Rh1CG259000 Rh1CG259600
rosa_wichuraiana	Rw1G024540 Rw1G024560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	78
AciI	CCGC	2 cut(s)	386, 509
AclWI	GGATC	1 cut(s)	242
AcoI	YGGCCR	2 cut(s)	211, 238
AcyI	GRCGYC	2 cut(s)	254, 444
AfiI	CCNNNNNNNGG	2 cut(s)	24, 67
AflII	CTTAAG	1 cut(s)	496
AflIII	ACRYGT	1 cut(s)	152
AgsI	TTSAA	2 cut(s)	75, 581
AluBI	AGCT	1 cut(s)	339
AluI	AGCT	1 cut(s)	339
Alw21I	GWGCWC	2 cut(s)	281, 547
Alw26I	GTCTC	1 cut(s)	435
Alw44I	GTGCAC	1 cut(s)	543
AlwI	GGATC	1 cut(s)	242
AlwNI	CAGNNNCTG	1 cut(s)	294
Ama87I	CYCGRG	1 cut(s)	427
AoxI	GGCC	5 cut(s)	119, 211, 238, 431, 556
ApaLI	GTGCAC	1 cut(s)	543
ApeKI	GCWGC	2 cut(s)	336, 503
Asp700I	GAANNNNTTC	1 cut(s)	404
AspLEI	GCGC	3 cut(s)	96, 103, 140
AspS9I	GGNCC	2 cut(s)	119, 316
AsuC2I	CCSGG	1 cut(s)	98
AvaI	CYCGRG	1 cut(s)	427
AvaII	GGWCC	1 cut(s)	316
BaeGI	GKGCMC	1 cut(s)	547
BalI	TGGCCA	1 cut(s)	213
BanI	GGYRCC	1 cut(s)	78
Bbv12I	GWGCWC	2 cut(s)	281, 547
BbvI	GCAGC	2 cut(s)	348, 515
BccI	CCATC	1 cut(s)	449
BceAI	ACGGC	2 cut(s)	277, 431
BcnI	CCSGG	1 cut(s)	98
BcoDI	GTCTC	1 cut(s)	435
BfaI	CTAG	2 cut(s)	375, 437
BfmI	CTRYAG	1 cut(s)	363
BfrI	CTTAAG	1 cut(s)	496
BisI	GCNGC	2 cut(s)	337, 504
BlsI	GCNGC	2 cut(s)	338, 505
Bme1390I	CCNGG	1 cut(s)	98
Bme18I	GGWCC	1 cut(s)	316
BmeT110I	CYCGRG	1 cut(s)	427
BmgT120I	GGNCC	2 cut(s)	119, 316
BmiI	GGNNCC	2 cut(s)	80, 120
BmrFI	CCNGG	1 cut(s)	98
BmrI	ACTGGG	1 cut(s)	125
BmsI	GCATC	2 cut(s)	294, 361
BmuI	ACTGGG	1 cut(s)	125
BpuMI	CCSGG	1 cut(s)	98
BsaHI	GRCGYC	2 cut(s)	254, 444
BsaJI	CCNNGG	1 cut(s)	304
BsaWI	WCCGGW	1 cut(s)	171
BsaXI	ACNNNNNCTCC	4 cut(s)	42, 72, 432, 462
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 67
Bse118I	RCCGGY	2 cut(s)	236, 281
Bse1I	ACTGG	3 cut(s)	120, 559, 596
Bse3DI	GCAATG	2 cut(s)	214, 518
BseDI	CCNNGG	1 cut(s)	304
BseGI	GGATG	1 cut(s)	460
BseLI	CCNNNNNNNGG	2 cut(s)	24, 67
BseMI	GCAATG	2 cut(s)	214, 518
BseNI	ACTGG	3 cut(s)	120, 559, 596
BseSI	GKGCMC	1 cut(s)	547
BseXI	GCAGC	2 cut(s)	348, 515
BsgI	GTGCAG	1 cut(s)	522
BshFI	GGCC	5 cut(s)	121, 213, 240, 433, 558
BshNI	GGYRCC	1 cut(s)	78
BsiHKAI	GWGCWC	2 cut(s)	281, 547
BsiHKCI	CYCGRG	1 cut(s)	427
BsiSI	CCGG	5 cut(s)	97, 172, 237, 251, 282
BslI	CCNNNNNNNGG	2 cut(s)	24, 67
BsmAI	GTCTC	1 cut(s)	435
BsmBI	CGTCTC	1 cut(s)	435
BsmI	GAATGC	1 cut(s)	188
BsnI	GGCC	5 cut(s)	121, 213, 240, 433, 558
BsoBI	CYCGRG	1 cut(s)	427
Bsp1286I	GDGCHC	2 cut(s)	281, 547
Bsp143I	GATC	2 cut(s)	87, 247
BspACI	CCGC	2 cut(s)	386, 509
BspANI	GGCC	5 cut(s)	121, 213, 240, 433, 558
BspLI	GGNNCC	2 cut(s)	80, 120
BspMAI	CTGCAG	1 cut(s)	367
BspPI	GGATC	1 cut(s)	242
BspT107I	GGYRCC	1 cut(s)	78
BspTI	CTTAAG	1 cut(s)	496
BsrDI	GCAATG	2 cut(s)	214, 518
BsrFI	RCCGGY	2 cut(s)	236, 281
BsrI	ACTGG	3 cut(s)	120, 559, 596
BssAI	RCCGGY	2 cut(s)	236, 281
BssECI	CCNNGG	1 cut(s)	304
BssMI	GATC	2 cut(s)	87, 247
BssNI	GRCGYC	2 cut(s)	254, 444
BssT1I	CCWWGG	1 cut(s)	304
Bst4CI	ACNGT	2 cut(s)	201, 245
BstACI	GRCGYC	2 cut(s)	254, 444
BstAFI	CTTAAG	1 cut(s)	496
BstAPI	GCANNNNNTGC	1 cut(s)	371
BstC8I	GCNNGC	1 cut(s)	238
BstDEI	CTNAG	2 cut(s)	232, 409
BstF5I	GGATG	1 cut(s)	460
BstHHI	GCGC	3 cut(s)	96, 103, 140
BstKTI	GATC	2 cut(s)	90, 250
BstMAI	GTCTC	1 cut(s)	435
BstMBI	GATC	2 cut(s)	87, 247
BstMWI	GCNNNNNNNGC	3 cut(s)	100, 146, 371
BstNSI	RCATGY	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	96
BstSFI	CTRYAG	1 cut(s)	363
BstSLI	GKGCMC	1 cut(s)	547
BstV1I	GCAGC	2 cut(s)	348, 515
BsuRI	GGCC	5 cut(s)	121, 213, 240, 433, 558
BtsCI	GGATG	1 cut(s)	460
BtsIMutI	CAGTG	3 cut(s)	241, 552, 603
Cac8I	GCNNGC	1 cut(s)	238
CaiI	CAGNNNCTG	1 cut(s)	294
CfoI	GCGC	3 cut(s)	96, 103, 140
Cfr10I	RCCGGY	2 cut(s)	236, 281
Cfr13I	GGNCC	2 cut(s)	119, 316
CseI	GACGC	2 cut(s)	243, 452
CviAII	CATG	1 cut(s)	153
CviJI	RGCY	9 cut(s)	5, 121, 213, 236, 240, 264, 339, 433, 558
CviKI_1	RGCY	9 cut(s)	5, 121, 213, 236, 240, 264, 339, 433, 558
DdeI	CTNAG	2 cut(s)	232, 409
DpnI	GATC	2 cut(s)	89, 249
DpnII	GATC	2 cut(s)	87, 247
EaeI	YGGCCR	2 cut(s)	211, 238
Eco130I	CCWWGG	1 cut(s)	304
Eco147I	AGGCCT	1 cut(s)	433
Eco32I	GATATC	1 cut(s)	472
Eco47I	GGWCC	1 cut(s)	316
Eco88I	CYCGRG	1 cut(s)	427
EcoO109I	RGGNCCY	1 cut(s)	316
EcoRV	GATATC	1 cut(s)	472
EcoT14I	CCWWGG	1 cut(s)	304
ErhI	CCWWGG	1 cut(s)	304
Esp3I	CGTCTC	1 cut(s)	435
FaeI	CATG	1 cut(s)	156
FaiI	YATR	5 cut(s)	154, 185, 395, 397, 570
FatI	CATG	1 cut(s)	152
FauNDI	CATATG	1 cut(s)	395
Fnu4HI	GCNGC	2 cut(s)	337, 504
FokI	GGATG	1 cut(s)	467
Fsp4HI	GCNGC	2 cut(s)	337, 504
FspBI	CTAG	2 cut(s)	375, 437
GlaI	GCGC	3 cut(s)	95, 102, 139
GluI	GCNGC	2 cut(s)	337, 504
HaeIII	GGCC	5 cut(s)	121, 213, 240, 433, 558
HapII	CCGG	5 cut(s)	97, 172, 237, 251, 282
HgaI	GACGC	2 cut(s)	243, 452
HhaI	GCGC	3 cut(s)	96, 103, 140
Hin1I	GRCGYC	2 cut(s)	254, 444
Hin1II	CATG	1 cut(s)	156
Hin6I	GCGC	3 cut(s)	94, 101, 138
HinP1I	GCGC	3 cut(s)	94, 101, 138
HinfI	GANTC	2 cut(s)	20, 55
HpaII	CCGG	5 cut(s)	97, 172, 237, 251, 282
Hpy166II	GTNNAC	5 cut(s)	15, 113, 181, 463, 545
Hpy188I	TCNGA	2 cut(s)	87, 290
Hpy188III	TCNNGA	2 cut(s)	475, 524
Hpy8I	GTNNAC	5 cut(s)	15, 113, 181, 463, 545
HpyAV	CCTTC	1 cut(s)	92
HpyCH4III	ACNGT	2 cut(s)	201, 245
HpyCH4V	TGCA	3 cut(s)	365, 503, 545
HpyF10VI	GCNNNNNNNGC	3 cut(s)	100, 146, 371
HpyF3I	CTNAG	2 cut(s)	232, 409
Hsp92I	GRCGYC	2 cut(s)	254, 444
Hsp92II	CATG	1 cut(s)	156
HspAI	GCGC	3 cut(s)	94, 101, 138
KroI	GCCGGC	1 cut(s)	236
KroNI	GCCGGC	1 cut(s)	238
Kzo9I	GATC	2 cut(s)	87, 247
Lsp1109I	GCAGC	2 cut(s)	348, 515
LweI	GCATC	2 cut(s)	294, 361
MaeI	CTAG	2 cut(s)	375, 437
MaeIII	GTNAC	2 cut(s)	155, 347
MalI	GATC	2 cut(s)	89, 249
MboI	GATC	2 cut(s)	87, 247
MboII	GAAGA	2 cut(s)	37, 177
MhlI	GDGCHC	2 cut(s)	281, 547
MlsI	TGGCCA	1 cut(s)	213
MluCI	AATT	1 cut(s)	581
MluNI	TGGCCA	1 cut(s)	213
MlyI	GAGTC	1 cut(s)	29
MnlI	CCTC	8 cut(s)	123, 127, 203, 231, 371, 423, 444, 473
Mox20I	TGGCCA	1 cut(s)	213
MroNI	GCCGGC	1 cut(s)	236
MroXI	GAANNNNTTC	1 cut(s)	404
MscI	TGGCCA	1 cut(s)	213
MseI	TTAA	2 cut(s)	312, 497
MslI	CAYNNNNRTG	1 cut(s)	511
Msp20I	TGGCCA	1 cut(s)	213
MspCI	CTTAAG	1 cut(s)	496
MspI	CCGG	5 cut(s)	97, 172, 237, 251, 282
MspR9I	CCNGG	1 cut(s)	98
Mva1269I	GAATGC	1 cut(s)	188
MwoI	GCNNNNNNNGC	3 cut(s)	100, 146, 371
NaeI	GCCGGC	1 cut(s)	238
NciI	CCSGG	1 cut(s)	98
NdeI	CATATG	1 cut(s)	395
NdeII	GATC	2 cut(s)	87, 247
NgoMIV	GCCGGC	1 cut(s)	236
NlaIII	CATG	1 cut(s)	156
NlaIV	GGNNCC	2 cut(s)	80, 120
NspI	RCATGY	1 cut(s)	156
PaeR7I	CTCGAG	1 cut(s)	427
PceI	AGGCCT	1 cut(s)	433
PciI	ACATGT	1 cut(s)	152
PctI	GAATGC	1 cut(s)	188
PdiI	GCCGGC	1 cut(s)	238
PdmI	GAANNNNTTC	1 cut(s)	404
PfeI	GAWTC	1 cut(s)	55
PkrI	GCNGC	2 cut(s)	338, 505
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
PpuMI	RGGWCCY	1 cut(s)	316
PscI	ACATGT	1 cut(s)	152
Psp5II	RGGWCCY	1 cut(s)	316
PspN4I	GGNNCC	2 cut(s)	80, 120
PspPI	GGNCC	2 cut(s)	119, 316
PspPPI	RGGWCCY	1 cut(s)	316
PspXI	VCTCGAGB	1 cut(s)	427
PstI	CTGCAG	1 cut(s)	367
PstNI	CAGNNNCTG	1 cut(s)	294
RseI	CAYNNNNRTG	1 cut(s)	511
SaqAI	TTAA	2 cut(s)	312, 497
SatI	GCNGC	2 cut(s)	337, 504
Sau3AI	GATC	2 cut(s)	87, 247
Sau96I	GGNCC	2 cut(s)	119, 316
SchI	GAGTC	1 cut(s)	29
ScrFI	CCNGG	1 cut(s)	98
SduI	GDGCHC	2 cut(s)	281, 547
SetI	ASST	4 cut(s)	84, 318, 341, 382
SfaNI	GCATC	2 cut(s)	294, 361
SfcI	CTRYAG	1 cut(s)	363
Sfr274I	CTCGAG	1 cut(s)	427
SinI	GGWCC	1 cut(s)	316
SlaI	CTCGAG	1 cut(s)	427
SmiMI	CAYNNNNRTG	1 cut(s)	511
SmlI	CTYRAG	2 cut(s)	427, 496
SmoI	CTYRAG	2 cut(s)	427, 496
Sse9I	AATT	1 cut(s)	581
SseBI	AGGCCT	1 cut(s)	433
SsiI	CCGC	2 cut(s)	386, 509
SspMI	CTAG	2 cut(s)	375, 437
StuI	AGGCCT	1 cut(s)	433
StyD4I	CCNGG	1 cut(s)	96
StyI	CCWWGG	1 cut(s)	304
TaaI	ACNGT	2 cut(s)	201, 245
TaqI	TCGA	4 cut(s)	326, 428, 468, 474
TasI	AATT	1 cut(s)	581
TfiI	GAWTC	1 cut(s)	55
Tru1I	TTAA	2 cut(s)	312, 497
Tru9I	TTAA	2 cut(s)	312, 497
TscAI	CASTG	3 cut(s)	248, 559, 603
TseI	GCWGC	2 cut(s)	336, 503
TspGWI	ACGGA	1 cut(s)	507
TspRI	CASTG	3 cut(s)	248, 559, 603
Vha464I	CTTAAG	1 cut(s)	496
VneI	GTGCAC	1 cut(s)	543
VpaK11BI	GGWCC	1 cut(s)	316
XceI	RCATGY	1 cut(s)	156
XcmI	CCANNNNNNNNNTGG	1 cut(s)	536
XhoI	CTCGAG	1 cut(s)	427
XmnI	GAANNNNTTC	1 cut(s)	404
XspI	CTAG	2 cut(s)	375, 437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.